Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Reverse (-)

45143903 .. 45147442

Gene Structure 3540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034574

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGAGATCGTCTCCATGGTCTTGGCTGGCAAAGTCAACAAGCATTTGGTCTCCCTGATCAATCGGGAAGGAGTCAAGGCCATCGGCCTCTGCAGCTCCGACGGCGAGCTCATCACAGAGGCTGTTGAGGTTGAAGGTGGCTTGGAAGTTTTCAGGGTCAGAAGAAGTGTAGAAGGCGGGCTTGGCAGTGGGGACAGTGGTGGTGGTGGTGGTGGTGCTGTTGGAGTTTCGTCTGCGGTTTCGGCGATTTCAATTTGGAGGGCGAGGCATGGAGCAGGAGAAGGCGGCTTTGGGAGCGCGGGGTTCTTCAGATCTTTCGGCAATGGTGGTTGTTGCTTTCGGTGGAGCTTTGGATTTGGGATTGAAGGCAAAAATGTCAGAATTAGGGCTAAGAAGGGCGTGTTGCGCCGATATCAACATGCTCGACAAAACTACTTCGCCGTGGCCTTGAACAAGAGTTGGGATTTCACAGTCGTGTGGTGTAAGAACTTGGACAGTGCAAAGACCGCAACTTTACTCAGGTTTTTCGATATGGAGACGGTCAGAGAAAGTGTTACGTGTATGCAGCTCTCCATCTTTAGAAATCATATCTGCTACAAATTTAGAAGATGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

206

Amino Acids

22.39

Weight (kDa)

9.76

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	299
AciI	CCGC	5 cut(s)	177, 236, 285, 299, 507
AcsI	RAATTY	1 cut(s)	599
AcuI	CTGAAG	1 cut(s)	292
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	4 cut(s)	134, 252, 365, 451
AjuI	GAANNNNNNNTTGG	4 cut(s)	165, 197, 273, 305
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	4 cut(s)	96, 109, 348, 568
AluI	AGCT	4 cut(s)	96, 109, 348, 568
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	3 cut(s)	16, 55, 530
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	3 cut(s)	78, 85, 444
ApeKI	GCWGC	2 cut(s)	93, 565
ApoI	RAATTY	1 cut(s)	599
AspLEI	GCGC	2 cut(s)	299, 408
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	105, 577
BccI	CCATC	3 cut(s)	89, 581, 603
BceAI	ACGGC	2 cut(s)	118, 425
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	3 cut(s)	16, 55, 530
BfmI	CTRYAG	1 cut(s)	91
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	3 cut(s)	94, 286, 566
BlsI	GCNGC	3 cut(s)	95, 287, 567
BplI	GAGNNNNNCTC	1 cut(s)	28
BsaAI	YACGTR	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	15, 441
Bse3DI	GCAATG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	15, 441
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	532
BseXI	GCAGC	2 cut(s)	105, 577
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	3 cut(s)	80, 87, 446
BsiHKAI	GWGCWC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	206
BsmAI	GTCTC	3 cut(s)	16, 55, 530
BsmBI	CGTCTC	2 cut(s)	16, 530
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	80, 87, 446
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	6, 57, 311
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	5 cut(s)	177, 236, 285, 299, 507
BspANI	GGCC	3 cut(s)	80, 87, 446
BspCNI	CTCAG	1 cut(s)	531
BspFNI	CGCG	1 cut(s)	299
BspMAI	CTGCAG	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	15, 441
BssMI	GATC	3 cut(s)	6, 57, 311
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	4 cut(s)	197, 472, 497, 541
BstBAI	YACGTR	1 cut(s)	558
BstC8I	GCNNGC	3 cut(s)	28, 107, 179
BstDEI	CTNAG	2 cut(s)	390, 518
BstDSI	CCRYGG	2 cut(s)	15, 441
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	2 cut(s)	299, 408
BstKTI	GATC	3 cut(s)	9, 60, 314
BstMAI	GTCTC	3 cut(s)	16, 55, 530
BstMBI	GATC	3 cut(s)	6, 57, 311
BstMWI	GCNNNNNNNGC	7 cut(s)	93, 102, 183, 242, 294, 405, 506
BstNSI	RCATGY	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	105, 577
BstX2I	RGATCY	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	80, 87, 446
BtgI	CCRYGG	2 cut(s)	15, 441
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	3 cut(s)	193, 202, 502
Cac8I	GCNNGC	3 cut(s)	28, 107, 179
CaiI	CAGNNNCTG	1 cut(s)	122
CfoI	GCGC	2 cut(s)	299, 408
CviAII	CATG	3 cut(s)	16, 269, 419
DdeI	CTNAG	2 cut(s)	390, 518
DpnI	GATC	3 cut(s)	8, 59, 313
DpnII	GATC	3 cut(s)	6, 57, 311
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	413
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	2 cut(s)	16, 530
FaeI	CATG	3 cut(s)	19, 272, 422
FaiI	YATR	6 cut(s)	17, 270, 420, 533, 563, 588
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	3 cut(s)	15, 268, 418
FauI	CCCGC	2 cut(s)	170, 292
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	3 cut(s)	94, 286, 566
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	3 cut(s)	94, 286, 566
GlaI	GCGC	2 cut(s)	298, 407
GluI	GCNGC	3 cut(s)	94, 286, 566
HaeIII	GGCC	3 cut(s)	80, 87, 446
HhaI	GCGC	2 cut(s)	299, 408
Hin1II	CATG	3 cut(s)	19, 272, 422
Hin6I	GCGC	2 cut(s)	297, 406
HinP1I	GCGC	2 cut(s)	297, 406
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	6 cut(s)	100, 161, 311, 380, 545, 617
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	6 cut(s)	62, 128, 167, 275, 359, 388
HpyCH4III	ACNGT	4 cut(s)	197, 472, 497, 541
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	3 cut(s)	93, 500, 565
HpyF10VI	GCNNNNNNNGC	7 cut(s)	93, 102, 183, 242, 294, 405, 506
HpyF3I	CTNAG	2 cut(s)	390, 518
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	3 cut(s)	19, 272, 422
HspAI	GCGC	2 cut(s)	297, 406
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	6, 57, 311
LmnI	GCTCC	4 cut(s)	101, 272, 294, 345
LpnPI	CCDG	5 cut(s)	12, 68, 139, 261, 505
Lsp1109I	GCAGC	2 cut(s)	105, 577
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	3 cut(s)	8, 59, 313
MboI	GATC	3 cut(s)	6, 57, 311
MboII	GAAGA	3 cut(s)	174, 298, 618
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	3 cut(s)	252, 381, 599
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	2 cut(s)	123, 202
MnlI	CCTC	5 cut(s)	98, 112, 121, 252, 258
MslI	CAYNNNNRTG	1 cut(s)	473
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	7 cut(s)	93, 102, 183, 242, 294, 405, 506
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	3 cut(s)	6, 57, 311
NlaIII	CATG	3 cut(s)	19, 272, 422
NspI	RCATGY	1 cut(s)	422
OliI	CACNNNNGTG	1 cut(s)	473
PkrI	GCNGC	3 cut(s)	95, 287, 567
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	111
SatI	GCNGC	3 cut(s)	94, 286, 566
Sau3AI	GATC	3 cut(s)	6, 57, 311
SchI	GAGTC	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	8 cut(s)	98, 111, 132, 139, 350, 524, 560, 570
SfcI	CTRYAG	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	252, 381, 599
SsiI	CCGC	5 cut(s)	177, 236, 285, 299, 507
SstI	GAGCTC	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	4 cut(s)	197, 472, 497, 541
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	2 cut(s)	424, 528
TasI	AATT	3 cut(s)	252, 381, 599
TauI	GCSGC	1 cut(s)	288
TscAI	CASTG	3 cut(s)	193, 202, 502
TseI	GCWGC	2 cut(s)	93, 565
TspRI	CASTG	3 cut(s)	193, 202, 502
XapI	RAATTY	1 cut(s)	599
XceI	RCATGY	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.