Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Forward (+)

43422346 .. 43424210

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025257

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTTGGCTTCTAAAACCCACCCTTGTCCATCTCTGATCTCATTCCCTCCTTCCCCAACACCCCGCAACCTCCCCAACACCCTCACCTTCTTCCGCCCCAAATGTCCACCGCACTCGCACTCACTCTCAATCAAAGCCCAACACTCGGCTCATACCACTCTAGGTCAGCTCCGGGTCGACATTCTCTCCGAATCCGAACCCTTCATCCATAAATTCCGAGGCAAAACCATCGTCGTCAAGTACGGCGGCGCCGCCATAAAGGACGAGACCCTCCAGGCCACCGTCGTCAGAGACCTCGTCCTCCTCGCCTGCGTCGGCCTCTGCCCCATCTTGGTCCACGGCGGTGGCCCCGAGATTAACCTCTGGCTCAAGCGCCTCAACATCGAGGTCAACTTCCACGACGGCCTCCGTGTCACCGACGCGCCCACCATGGAGATCGTCTCCATGGTCTTGGCCGGCAAAGTCAACAAGCATTTGGTCTCCTTGATCAACCGGGAAGGAGTCAAGGCCATCGGCCTCTGCGGCTCCGACGGCGAGCTCATCACAGAGGCTATTGAGGTTGAAGGTGGCTTGGAAGTTTTCAGGGTCAGAAGAAGTGTAAAAGGCGGGCTTGGCGGTGGGGACTGTGGTGGTGGTGGTGGTGGTGCTGTTGGAGTTTCGTCTGCGGTTTCGGCGATTTCAATTTGGAGGGCGAGGCATGAAGCAGGAGAAGGAGGCTTTGGGAGCGCGGGTTGCGGAAGAAGAAGAGGAGAGGAGGAGAGAGATGGTGTCTTGACCTCATCGCAAACGCATTACAAGCAGAATGACAAAGTTGGGTTCCCAGAAATGCCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

279

Amino Acids

29.54

Weight (kDa)

8.69

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	75 - 185	1.1e-17	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	422, 728
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	145, 331
AgsI	TTSAA	2 cut(s)	563, 681
AjnI	CCWGG	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	702, 734
AleI	CACNNNNGTG	1 cut(s)	342
AloI	GAACNNNNNNTCC	2 cut(s)	189, 221
AluBI	AGCT	2 cut(s)	169, 538
AluI	AGCT	2 cut(s)	169, 538
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	4 cut(s)	260, 285, 445, 484
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	7 cut(s)	276, 316, 346, 403, 453, 507, 514
ApoI	RAATTY	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspLEI	GCGC	4 cut(s)	251, 375, 424, 728
AspS9I	GGNCC	2 cut(s)	334, 347
AsuC2I	CCSGG	2 cut(s)	173, 494
AsuHPI	GGTGA	2 cut(s)	76, 406
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	540
BccI	CCATC	5 cut(s)	37, 236, 335, 518, 758
BceAI	ACGGC	4 cut(s)	259, 355, 418, 547
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	1 cut(s)	275
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	2 cut(s)	173, 494
BcoDI	GTCTC	4 cut(s)	260, 285, 445, 484
BfaI	CTAG	1 cut(s)	161
BfoI	RGCGCY	2 cut(s)	252, 376
BglI	GCCNNNNNGGC	1 cut(s)	522
BisI	GCNGC	3 cut(s)	247, 252, 523
BlsI	GCNGC	3 cut(s)	248, 253, 524
Bme1390I	CCNGG	3 cut(s)	173, 275, 494
Bme18I	GGWCC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	334, 347
BmiI	GGNNCC	4 cut(s)	250, 349, 526, 818
BmrFI	CCNGG	3 cut(s)	173, 275, 494
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	2 cut(s)	173, 494
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	3 cut(s)	260, 285, 484
BsaJI	CCNNGG	4 cut(s)	217, 337, 429, 444
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 715, 745
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 331
Bse118I	RCCGGY	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	4 cut(s)	217, 337, 429, 444
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	145, 331
BseRI	GAGGAG	4 cut(s)	293, 762, 767, 770
Bsh1236I	CGCG	2 cut(s)	422, 728
BshFI	GGCC	7 cut(s)	278, 318, 348, 405, 455, 509, 516
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	3 cut(s)	172, 456, 493
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	2 cut(s)	145, 331
BsmAI	GTCTC	4 cut(s)	260, 285, 445, 484
BsmBI	CGTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	7 cut(s)	278, 318, 348, 405, 455, 509, 516
Bso31I	GGTCTC	3 cut(s)	260, 285, 484
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	3 cut(s)	36, 435, 486
Bsp19I	CCATGG	2 cut(s)	429, 444
BspANI	GGCC	7 cut(s)	278, 318, 348, 405, 455, 509, 516
BspFNI	CGCG	2 cut(s)	422, 728
BspLI	GGNNCC	4 cut(s)	250, 349, 526, 818
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	3 cut(s)	260, 285, 484
BsrFI	RCCGGY	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	4 cut(s)	217, 337, 429, 444
BssMI	GATC	3 cut(s)	36, 435, 486
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	429, 444
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	3 cut(s)	283, 626, 834
Bst6I	CTCTTC	1 cut(s)	739
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	4 cut(s)	310, 457, 536, 608
BstDSI	CCRYGG	3 cut(s)	337, 429, 444
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	2 cut(s)	422, 728
BstH2I	RGCGCY	2 cut(s)	252, 376
BstHHI	GCGC	4 cut(s)	251, 375, 424, 728
BstKTI	GATC	3 cut(s)	39, 438, 489
BstMAI	GTCTC	4 cut(s)	260, 285, 445, 484
BstMBI	GATC	3 cut(s)	36, 435, 486
BstMWI	GCNNNNNNNGC	7 cut(s)	522, 531, 612, 671, 723, 732, 796
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	3 cut(s)	171, 273, 492
BstUI	CGCG	2 cut(s)	422, 728
BstXI	CCANNNNNNTGG	2 cut(s)	344, 451
BsuRI	GGCC	7 cut(s)	278, 318, 348, 405, 455, 509, 516
BtgI	CCRYGG	3 cut(s)	337, 429, 444
BtgZI	GCGATG	1 cut(s)	765
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	4 cut(s)	310, 457, 536, 608
CfoI	GCGC	4 cut(s)	251, 375, 424, 728
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	334, 347
CseI	GACGC	2 cut(s)	301, 428
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	3 cut(s)	430, 445, 698
CviQI	GTAC	1 cut(s)	241
DinI	GGCGCC	1 cut(s)	250
DpnI	GATC	3 cut(s)	38, 437, 488
DpnII	GATC	3 cut(s)	36, 435, 486
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	2 cut(s)	429, 444
Eco24I	GRGCYC	1 cut(s)	540
Eco31I	GGTCTC	3 cut(s)	260, 285, 484
Eco47I	GGWCC	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	538
Eco88I	CYCGRG	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	429, 444
EcoT38I	GRGCYC	1 cut(s)	540
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
ErhI	CCWWGG	2 cut(s)	429, 444
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	3 cut(s)	433, 448, 701
FaiI	YATR	6 cut(s)	153, 210, 257, 431, 446, 699
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	3 cut(s)	429, 444, 697
FauI	CCCGC	3 cut(s)	71, 599, 721
FbaI	TGATCA	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	247, 252, 523
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	3 cut(s)	247, 252, 523
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	4 cut(s)	250, 374, 423, 727
GluI	GCNGC	3 cut(s)	247, 252, 523
GsuI	CTGGAG	1 cut(s)	257
HaeII	RGCGCY	2 cut(s)	252, 376
HaeIII	GGCC	7 cut(s)	278, 318, 348, 405, 455, 509, 516
HapII	CCGG	3 cut(s)	172, 456, 493
HgaI	GACGC	2 cut(s)	301, 428
HhaI	GCGC	4 cut(s)	251, 375, 424, 728
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	3 cut(s)	433, 448, 701
Hin6I	GCGC	4 cut(s)	249, 373, 422, 726
HinP1I	GCGC	4 cut(s)	249, 373, 422, 726
HincII	GTYRAC	3 cut(s)	178, 391, 466
HindII	GTYRAC	3 cut(s)	178, 391, 466
HinfI	GANTC	2 cut(s)	191, 501
HpaII	CCGG	3 cut(s)	172, 456, 493
HphI	GGTGA	2 cut(s)	76, 406
Hpy166II	GTNNAC	5 cut(s)	107, 178, 337, 391, 466
Hpy188I	TCNGA	7 cut(s)	36, 190, 196, 218, 290, 529, 590
Hpy188III	TCNNGA	1 cut(s)	772
Hpy8I	GTNNAC	5 cut(s)	107, 178, 337, 391, 466
Hpy99I	CGWCG	6 cut(s)	236, 287, 317, 404, 422, 533
HpyAV	CCTTC	6 cut(s)	60, 97, 211, 491, 557, 704
HpyCH4III	ACNGT	3 cut(s)	283, 626, 834
HpyF10VI	GCNNNNNNNGC	7 cut(s)	522, 531, 612, 671, 723, 732, 796
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	433, 448, 701
HspAI	GCGC	4 cut(s)	249, 373, 422, 726
KasI	GGCGCC	1 cut(s)	248
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	36, 435, 486
LmnI	GCTCC	3 cut(s)	174, 530, 723
LpnPI	CCDG	9 cut(s)	185, 260, 287, 322, 349, 469, 506, 568, 690
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	38, 437, 488
MboI	GATC	3 cut(s)	36, 435, 486
MboII	GAAGA	5 cut(s)	82, 603, 750, 753, 756
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	2 cut(s)	212, 681
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	510
MmeI	TCCRAC	2 cut(s)	552, 631
MroNI	GCCGGC	1 cut(s)	455
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	3 cut(s)	172, 456, 493
MspR9I	CCNGG	3 cut(s)	173, 275, 494
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	2 cut(s)	422, 728
MwoI	GCNNNNNNNGC	7 cut(s)	522, 531, 612, 671, 723, 732, 796
NaeI	GCCGGC	1 cut(s)	457
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	173, 494
NcoI	CCATGG	2 cut(s)	429, 444
NdeII	GATC	3 cut(s)	36, 435, 486
NgoMIV	GCCGGC	1 cut(s)	455
NlaIII	CATG	3 cut(s)	433, 448, 701
NlaIV	GGNNCC	4 cut(s)	250, 349, 526, 818
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	412
OliI	CACNNNNGTG	1 cut(s)	342
PdiI	GCCGGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	248, 253, 524
PleI	GAGTC	1 cut(s)	509
PluTI	GGCGCC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	509
Psp124BI	GAGCTC	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	4 cut(s)	250, 349, 526, 818
PspPI	GGNCC	2 cut(s)	334, 347
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	540
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	3 cut(s)	247, 252, 523
Sau3AI	GATC	3 cut(s)	36, 435, 486
Sau96I	GGNCC	2 cut(s)	334, 347
SchI	GAGTC	1 cut(s)	510
ScrFI	CCNGG	3 cut(s)	173, 275, 494
SduI	GDGCHC	1 cut(s)	540
SfoI	GGCGCC	1 cut(s)	250
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	212, 681
SspDI	GGCGCC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	540
StyD4I	CCNGG	3 cut(s)	171, 273, 492
StyI	CCWWGG	2 cut(s)	429, 444
TaaI	ACNGT	3 cut(s)	283, 626, 834
TaqI	TCGA	2 cut(s)	177, 384
TasI	AATT	2 cut(s)	212, 681
TauI	GCSGC	3 cut(s)	249, 254, 525
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	193, 714
TspGWI	ACGGA	1 cut(s)	398
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.