Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

21749966 .. 21752141

Gene Structure 2176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGTGACACCCAAATTACATCTCGATCTCTCTCTTACAAAAAAGGTATCTTACTTGTTTGTCTCTAGACAAACACTATATCGTCTTTCTTCCTCCTGTCTTGCGTCCTTATTTCTCTCTTTTGATGCGTTTTTAATTGCAAGGAGTTGTTTTTTTTTTCAGATGAAAGACCATATTCATGAGCATGACCACATGGTTCAGATTTGTGGGGAAGTTTCATCAGGAGAAACAAGCTTGGTGGGCATCAAGAAGACATGTGGAGAAGCGCCTTGCGGATTCTCAGATGCCAAGACCAGTTCAATAGAAGCTCAAGAGCGTGCAGCATCAATGAGAAAGCTATTAATAGCTGTTCTTCTCTGTGCCATTTTCATAGTTGTAGAAGTCGTTGGAGGAATCAAGGCCAACAGTCTTGCGATTCTCACAGATGCAGCTCATCTGTTATCTGATGTTGCAGCCTTTGCAATATCTTTGTTCTCGCTCTGGGCTTCGGGATGGAAGGCAAACCCTCAGCAATCTTATGGGTTTTTCAGAATAGAGATTCTTGGTGCTCTTGTCTCCATTCAAATGATTTGGCTTCTTGCTGGTATCTTGGTTTATGAAGCCATTGTTAGACTTAACAACGGTAGTGGTGAAGTGGAGGGATCTCTTATGTTTGCTGTCTCTGCAGTTGGCTTACTTGTGAACATTGCAATGGCTATTCTGTTAGGTCATGACCATGGTCATGGTCATGGTCATAGTCATGACAATGGTCACGGTCATAGTCATGATCATGGCCATGGAATAGCCGCAACCGAGCATCATCATGACTCTGGTCATGATGAATCACAACTATCTGATGTCTTAATCGAGCAAAAGAAGCAGCGTAATGTAAATATTCAAGGGGCTTATCTTCACGTGCTGGGAGATTCGATACAGAGCGTAGGAGTGATGATAGGAGGAGCAATCATATGGTATAAGCCGGAGTGGAAGATCCTTGATTTGATATGCACATTGGTTTTCTCTGTGATTGTGTTAGGGACAACAATTGGGATGCTTAGGAACATTCTAGAGGTTTTAATGGAGTCAACACCACGAGAGATTGACCCGACAATGCTTGAAAAGGGAGTGTGTGAAATTGAAGAAGTGGTGGCTGTTCATGAGCTTCACATTTGGGCGATTACTGTCGGCAAACTTTTGTTGGCATGTCATGTTAAAATCAGACCTGAGGCAGAGGCAGATATGGTTTTGGACAAGATTATCGATTACATTAAGAGGGAACACAACATTAGTCACGTGACTATTCAGATCGAACGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

432

Amino Acids

47.44

Weight (kDa)

6.0

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	74 - 314	6.4e-40	Cation efflux transmembrane domain
ZT_dimer	PF16916	320 - 392	1.8e-12	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	273, 786
AclWI	GGATC	2 cut(s)	649, 964
AcoI	YGGCCR	1 cut(s)	772
AcvI	CACGTG	2 cut(s)	895, 1273
AflIII	ACRYGT	1 cut(s)	254
AgsI	TTSAA	5 cut(s)	300, 563, 878, 1097, 1118
AluBI	AGCT	6 cut(s)	234, 308, 337, 347, 431, 1141
AluI	AGCT	6 cut(s)	234, 308, 337, 347, 431, 1141
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	3 cut(s)	67, 559, 664
AlwI	GGATC	2 cut(s)	649, 964
AoxI	GGCC	2 cut(s)	399, 772
ApeKI	GCWGC	4 cut(s)	320, 428, 452, 859
AseI	ATTAAT	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	16, 641
AxyI	CCTNAGG	1 cut(s)	1203
BalI	TGGCCA	1 cut(s)	774
BauI	CACGAG	1 cut(s)	1071
BbrPI	CACGTG	2 cut(s)	895, 1273
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	550
BbvCI	CCTCAGC	1 cut(s)	507
BbvI	GCAGC	4 cut(s)	332, 440, 464, 871
BccI	CCATC	1 cut(s)	486
BclI	TGATCA	1 cut(s)	766
BcoDI	GTCTC	3 cut(s)	67, 559, 664
BfaI	CTAG	2 cut(s)	66, 1046
BfmI	CTRYAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	269
BisI	GCNGC	5 cut(s)	321, 429, 453, 786, 860
BlsI	GCNGC	5 cut(s)	322, 430, 454, 787, 861
BmsI	GCATC	7 cut(s)	115, 252, 274, 332, 415, 805, 1020
BoxI	GACNNNNGTC	3 cut(s)	717, 747, 810
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	2 cut(s)	507, 1034
BpuEI	CTTGAG	1 cut(s)	294
Bsa29I	ATCGAT	1 cut(s)	1239
BsaAI	YACGTR	2 cut(s)	895, 1273
BsaJI	CCNNGG	2 cut(s)	715, 775
Bse1I	ACTGG	1 cut(s)	294
Bse21I	CCTNAGG	1 cut(s)	1203
Bse3DI	GCAATG	2 cut(s)	684, 696
BseCI	ATCGAT	1 cut(s)	1239
BseDI	CCNNGG	2 cut(s)	715, 775
BseGI	GGATG	2 cut(s)	497, 1035
BseMI	GCAATG	2 cut(s)	684, 696
BseMII	CTCAG	3 cut(s)	294, 521, 1194
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	951
BseXI	GCAGC	4 cut(s)	332, 440, 464, 871
BseYI	CCCAGC	1 cut(s)	898
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	401, 774
BshVI	ATCGAT	1 cut(s)	1239
BsiHKAI	GWGCWC	1 cut(s)	550
BsiSI	CCGG	1 cut(s)	959
BslFI	GGGAC	1 cut(s)	1030
BsmAI	GTCTC	3 cut(s)	67, 559, 664
BsmFI	GGGAC	1 cut(s)	1030
BsnI	GGCC	2 cut(s)	401, 774
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	5 cut(s)	25, 641, 766, 969, 1284
Bsp19I	CCATGG	2 cut(s)	715, 775
BspACI	CCGC	2 cut(s)	273, 786
BspANI	GGCC	2 cut(s)	401, 774
BspCNI	CTCAG	3 cut(s)	293, 520, 1195
BspDI	ATCGAT	1 cut(s)	1239
BspHI	TCATGA	7 cut(s)	178, 709, 739, 763, 802, 814, 1135
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	2 cut(s)	649, 964
BsrDI	GCAATG	2 cut(s)	684, 696
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	2 cut(s)	715, 775
BssMI	GATC	5 cut(s)	25, 641, 766, 969, 1284
BssSI	CACGAG	1 cut(s)	1071
BssT1I	CCWWGG	2 cut(s)	715, 775
Bst2BI	CACGAG	1 cut(s)	1071
Bst4CI	ACNGT	4 cut(s)	407, 623, 755, 1162
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstBAI	YACGTR	2 cut(s)	895, 1273
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	4 cut(s)	280, 507, 1034, 1203
BstDSI	CCRYGG	2 cut(s)	715, 775
BstF5I	GGATG	2 cut(s)	497, 1035
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	5 cut(s)	28, 644, 769, 972, 1287
BstMAI	GTCTC	3 cut(s)	67, 559, 664
BstMBI	GATC	5 cut(s)	25, 641, 766, 969, 1284
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 458, 662, 856
BstNSI	RCATGY	2 cut(s)	258, 1185
BstPAI	GACNNNNGTC	3 cut(s)	717, 747, 810
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	4 cut(s)	332, 440, 464, 871
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	2 cut(s)	641, 969
BstXI	CCANNNNNNTGG	1 cut(s)	722
BstYI	RGATCY	2 cut(s)	641, 969
Bsu15I	ATCGAT	1 cut(s)	1239
Bsu36I	CCTNAGG	1 cut(s)	1203
BsuRI	GGCC	2 cut(s)	401, 774
BsuTUI	ATCGAT	1 cut(s)	1239
BtgI	CCRYGG	2 cut(s)	715, 775
BtsCI	GGATG	2 cut(s)	497, 1035
Cac8I	GCNNGC	1 cut(s)	318
CciI	TCATGA	7 cut(s)	178, 709, 739, 763, 802, 814, 1135
CfoI	GCGC	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	1239
CseI	GACGC	1 cut(s)	93
CspCI	CAANNNNNGTGG	4 cut(s)	219, 254, 607, 642
DdeI	CTNAG	4 cut(s)	280, 507, 1034, 1203
DpnI	GATC	5 cut(s)	27, 643, 768, 971, 1286
DpnII	GATC	5 cut(s)	25, 641, 766, 969, 1284
EaeI	YGGCCR	1 cut(s)	772
Eco130I	CCWWGG	2 cut(s)	715, 775
Eco72I	CACGTG	2 cut(s)	895, 1273
Eco81I	CCTNAGG	1 cut(s)	1203
EcoT14I	CCWWGG	2 cut(s)	715, 775
ErhI	CCWWGG	2 cut(s)	715, 775
FaqI	GGGAC	1 cut(s)	1030
FauNDI	CATATG	1 cut(s)	947
FbaI	TGATCA	1 cut(s)	766
Fnu4HI	GCNGC	5 cut(s)	321, 429, 453, 786, 860
FokI	GGATG	2 cut(s)	504, 1042
Fsp4HI	GCNGC	5 cut(s)	321, 429, 453, 786, 860
FspBI	CTAG	2 cut(s)	66, 1046
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	5 cut(s)	321, 429, 453, 786, 860
GsaI	CCCAGC	1 cut(s)	902
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	401, 774
HapII	CCGG	1 cut(s)	959
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	1065
HindII	GTYRAC	1 cut(s)	1065
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	8 cut(s)	276, 393, 415, 538, 806, 821, 905, 1061
HpaII	CCGG	1 cut(s)	959
HphI	GGTGA	2 cut(s)	16, 641
Hpy166II	GTNNAC	2 cut(s)	682, 1065
Hpy188I	TCNGA	8 cut(s)	162, 201, 283, 445, 530, 835, 1199, 1284
Hpy8I	GTNNAC	2 cut(s)	682, 1065
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	4 cut(s)	407, 623, 755, 1162
HpyCH4IV	ACGT	3 cut(s)	894, 1272, 1291
HpyCH4V	TGCA	8 cut(s)	140, 320, 428, 452, 461, 665, 689, 987
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 458, 662, 856
HpyF3I	CTNAG	4 cut(s)	280, 507, 1034, 1203
HpySE526I	ACGT	3 cut(s)	894, 1272, 1291
HspAI	GCGC	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	5 cut(s)	25, 641, 766, 969, 1284
LmnI	GCTCC	1 cut(s)	938
LpnPI	CCDG	9 cut(s)	109, 207, 307, 466, 567, 795, 884, 972, 1215
Lsp1109I	GCAGC	4 cut(s)	332, 440, 464, 871
LweI	GCATC	7 cut(s)	115, 252, 274, 332, 415, 805, 1020
MaeI	CTAG	2 cut(s)	66, 1046
MaeII	ACGT	3 cut(s)	894, 1272, 1291
MaeIII	GTNAC	4 cut(s)	4, 749, 1268, 1273
MalI	GATC	5 cut(s)	27, 643, 768, 971, 1286
MboI	GATC	5 cut(s)	25, 641, 766, 969, 1284
MboII	GAAGA	6 cut(s)	81, 262, 344, 881, 979, 1130
MfeI	CAATTG	1 cut(s)	1023
MflI	RGATCY	2 cut(s)	641, 969
MhlI	GDGCHC	1 cut(s)	550
MlsI	TGGCCA	1 cut(s)	774
MluCI	AATT	4 cut(s)	14, 135, 1023, 1113
MluNI	TGGCCA	1 cut(s)	774
MlyI	GAGTC	2 cut(s)	800, 1070
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	9 cut(s)	103, 383, 516, 631, 929, 1042, 1198, 1204, 1245
Mox20I	TGGCCA	1 cut(s)	774
MscI	TGGCCA	1 cut(s)	774
MseI	TTAA	7 cut(s)	134, 341, 615, 842, 1055, 1191, 1248
Msp20I	TGGCCA	1 cut(s)	774
MspI	CCGG	1 cut(s)	959
MunI	CAATTG	1 cut(s)	1023
MwoI	GCNNNNNNNGC	4 cut(s)	240, 458, 662, 856
NcoI	CCATGG	2 cut(s)	715, 775
NdeI	CATATG	1 cut(s)	947
NdeII	GATC	5 cut(s)	25, 641, 766, 969, 1284
NmuCI	GTSAC	4 cut(s)	4, 749, 1268, 1273
NspI	RCATGY	2 cut(s)	258, 1185
PagI	TCATGA	7 cut(s)	178, 709, 739, 763, 802, 814, 1135
PciI	ACATGT	1 cut(s)	254
PfeI	GAWTC	6 cut(s)	276, 393, 415, 538, 821, 905
PkrI	GCNGC	5 cut(s)	322, 430, 454, 787, 861
PleI	GAGTC	2 cut(s)	800, 1069
PmaCI	CACGTG	2 cut(s)	895, 1273
PmlI	CACGTG	2 cut(s)	895, 1273
PpsI	GAGTC	2 cut(s)	800, 1069
Ppu21I	YACGTR	2 cut(s)	895, 1273
PscI	ACATGT	1 cut(s)	254
PshAI	GACNNNNGTC	3 cut(s)	717, 747, 810
PshBI	ATTAAT	1 cut(s)	341
PspCI	CACGTG	2 cut(s)	895, 1273
PspFI	CCCAGC	1 cut(s)	898
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	2 cut(s)	641, 969
SaqAI	TTAA	7 cut(s)	134, 341, 615, 842, 1055, 1191, 1248
SatI	GCNGC	5 cut(s)	321, 429, 453, 786, 860
Sau3AI	GATC	5 cut(s)	25, 641, 766, 969, 1284
SchI	GAGTC	2 cut(s)	800, 1070
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	7 cut(s)	115, 252, 274, 332, 415, 805, 1020
SfcI	CTRYAG	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	4 cut(s)	14, 135, 1023, 1113
SsiI	CCGC	2 cut(s)	273, 786
SspI	AATATT	1 cut(s)	874
SspMI	CTAG	2 cut(s)	66, 1046
StyI	CCWWGG	2 cut(s)	715, 775
TaaI	ACNGT	4 cut(s)	407, 623, 755, 1162
TaiI	ACGT	3 cut(s)	897, 1275, 1294
TaqI	TCGA	5 cut(s)	24, 846, 908, 1239, 1287
TasI	AATT	4 cut(s)	14, 135, 1023, 1113
TauI	GCSGC	1 cut(s)	788
TfiI	GAWTC	6 cut(s)	276, 393, 415, 538, 821, 905
Tru1I	TTAA	7 cut(s)	134, 341, 615, 842, 1055, 1191, 1248
Tru9I	TTAA	7 cut(s)	134, 341, 615, 842, 1055, 1191, 1248
TseFI	GTSAC	4 cut(s)	4, 749, 1268, 1273
TseI	GCWGC	4 cut(s)	320, 428, 452, 859
Tsp45I	GTSAC	4 cut(s)	4, 749, 1268, 1273
TspDTI	ATGAA	7 cut(s)	167, 179, 207, 358, 612, 834, 1124
VspI	ATTAAT	1 cut(s)	341
XbaI	TCTAGA	2 cut(s)	65, 1045
XceI	RCATGY	2 cut(s)	258, 1185
XspI	CTAG	2 cut(s)	66, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.