Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

6711481 .. 6712710

Gene Structure 1230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG090900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAAGCGCAACATTCTGGACACGGGCGTATATTTGAAGTGCATGGAGATGTGAAGGATATTGAGTCAAGCTTGCGTGGTAGCAAGATTTGTGCTGAAGCACCATGTGGATTTTCAGATCCTAATAACAGTTCCAAAGATGCTAAGGAACGGTCAGCATCAATGCGGAAGCTTTTGATAGCAGTTTTGCTCTGTGTCGTTTTCATGACTGTGGAAGTTGTTGGGGGTATCAAAGCCAATAGTCTTGCTATTATGACTGATGCAGCTCATCTATTGTCAGATGTTGCAGCATTTGCAATTTCCCTGTTCTCACTGTGGGCATCAGGATGGGAGGCAACTCCACGCCAGACTTATGGCTTCTTCAGAATTGAAATACTCGGTACACTTGTTTCCATCCAGATGATATGGCTTCTTACCGGGATCCTTGTATACGAAGCCATTGACAGACTCATCTATCAGACCGGTGAAGTTCAGGGCTTTCTCATGTTTGTTGTTTCTGCATTTGGTTTAGTGGTTAATATTGCTATGGCAGTCTTGTTGGGTCATGATCACGGCCACGGGCATGATCACGGTCACGGTCACGGTCACGGTCACGGTCACGGTCACGGTCACAGCCATGGTCACGGTCACGGCCACGACCACAGCCATAGTGACCACGATCATGGACACAGTGAACATCATCATAACACTGATAATCATCTCAATCATGAACATGATGACGAGCACCATCATTCTGAGGGAGCAGATCTCACACATCCACTGCTCAATGAAAATACAAGAAAGAACAAGCAACGAAATATCAACGTGCAGGGGGCTTATCTTCATGTACTCGGTGACCTCATTCAAAGTATTGGAGTTATGATAGGTGGAGCAGTTATATGGTACAAGCCAGAATGGAAGATTATTGACTTGATATGCACCCTTGTATTCTCAGTAATTGTGCTGTGGACAACAATCAATATGATGCGCAACATTTTGGAGGTTCTTATGGAGAGCACTCCTAGAGAAATTGATGCCACAAAACTTGAGAGAGGTCTCTGTGAGATGGATGAGGTTGTGGCAGTTCACGAACTACATATTTGGGCCATTACTGTTGGGAAGGTGCTACTGGCTTGCCATGTCATTGCTAAGCCGGATGCAGATACTGACATGGTACTAGAGAAGGTGATAGACTATATCAAGAGGGAATATAACATCACTCATGTCACTATTCAGATAGAGCGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

409

Amino Acids

45.48

Weight (kDa)

5.98

Isoelectric Point (pI)

21.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	58 - 330	9.8e-42	Cation efflux transmembrane domain
ZT_dimer	PF16916	334 - 408	3.1e-12	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	968
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	3 cut(s)	113, 415, 428
AcoI	YGGCCR	2 cut(s)	553, 631
AcuI	CTGAAG	2 cut(s)	117, 346
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	4 cut(s)	382, 828, 884, 1155
AgeI	ACCGGT	1 cut(s)	461
AgsI	TTSAA	3 cut(s)	38, 371, 845
AluBI	AGCT	3 cut(s)	72, 172, 266
AluI	AGCT	3 cut(s)	72, 172, 266
Alw21I	GWGCWC	2 cut(s)	726, 998
Alw26I	GTCTC	1 cut(s)	1040
AlwI	GGATC	3 cut(s)	113, 415, 428
AlwNI	CAGNNNCTG	1 cut(s)	1145
AoxI	GGCC	3 cut(s)	553, 631, 1083
ApeKI	GCWGC	2 cut(s)	263, 287
AsiGI	ACCGGT	1 cut(s)	461
AspLEI	GCGC	2 cut(s)	10, 969
AspS9I	GGNCC	1 cut(s)	1083
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	3 cut(s)	476, 845, 1177
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BamHI	GGATCC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	726, 998
BbvI	GCAGC	2 cut(s)	275, 299
BccI	CCATC	4 cut(s)	321, 401, 735, 1039
BceAI	ACGGC	2 cut(s)	568, 646
BclI	TGATCA	2 cut(s)	547, 565
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	1040
BfaI	CTAG	2 cut(s)	1002, 1157
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	2 cut(s)	264, 288
BlpI	GCTNAGC	1 cut(s)	1128
BlsI	GCNGC	2 cut(s)	265, 289
Bme1390I	CCNGG	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	1083
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	7 cut(s)	130, 167, 250, 329, 954, 1003, 1126
BplI	GAGNNNNNCTC	2 cut(s)	732, 764
Bpu10I	CCTNAGC	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	1128
BpuEI	CTTGAG	1 cut(s)	1046
BpuMI	CCSGG	1 cut(s)	418
BsaBI	GATNNNNATC	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	1040
BsaJI	CCNNGG	2 cut(s)	556, 616
BsaWI	WCCGGW	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	1113
Bse3DI	GCAATG	1 cut(s)	1122
Bse8I	GATNNNNATC	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	556, 616
BseGI	GGATG	5 cut(s)	332, 393, 754, 1054, 1141
BseJI	GATNNNNATC	1 cut(s)	696
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	2 cut(s)	726, 945
BseNI	ACTGG	1 cut(s)	1113
BseXI	GCAGC	2 cut(s)	275, 299
BsgI	GTGCAG	1 cut(s)	827
BshFI	GGCC	3 cut(s)	555, 633, 1085
BshTI	ACCGGT	1 cut(s)	461
BsiHKAI	GWGCWC	2 cut(s)	726, 998
BsiSI	CCGG	3 cut(s)	417, 462, 1133
BsmAI	GTCTC	1 cut(s)	1040
BsnI	GGCC	3 cut(s)	555, 633, 1085
Bso31I	GGTCTC	1 cut(s)	1040
Bsp1286I	GDGCHC	2 cut(s)	726, 998
Bsp143I	GATC	6 cut(s)	118, 420, 547, 565, 658, 745
Bsp1720I	GCTNAGC	1 cut(s)	1128
Bsp19I	CCATGG	1 cut(s)	616
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	3 cut(s)	555, 633, 1085
BspCNI	CTCAG	2 cut(s)	727, 944
BspHI	TCATGA	3 cut(s)	204, 544, 706
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	3 cut(s)	113, 415, 428
BspTNI	GGTCTC	1 cut(s)	1040
BsrDI	GCAATG	1 cut(s)	1122
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	1113
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	556, 616
BssMI	GATC	6 cut(s)	118, 420, 547, 565, 658, 745
BssNAI	GTATAC	1 cut(s)	430
BssT1I	CCWWGG	1 cut(s)	616
Bst1107I	GTATAC	1 cut(s)	430
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	74, 1114
BstDEI	CTNAG	4 cut(s)	144, 735, 931, 1128
BstDSI	CCRYGG	2 cut(s)	556, 616
BstEII	GGTNACC	1 cut(s)	833
BstF5I	GGATG	5 cut(s)	332, 393, 754, 1054, 1141
BstHHI	GCGC	2 cut(s)	10, 969
BstKTI	GATC	6 cut(s)	121, 423, 550, 568, 661, 748
BstMAI	GTCTC	1 cut(s)	1040
BstMBI	GATC	6 cut(s)	118, 420, 547, 565, 658, 745
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstPI	GGTNACC	1 cut(s)	833
BstSCI	CCNGG	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	275, 299
BstX2I	RGATCY	3 cut(s)	118, 420, 745
BstXI	CCANNNNNNTGG	2 cut(s)	353, 662
BstYI	RGATCY	3 cut(s)	118, 420, 745
BstZ17I	GTATAC	1 cut(s)	430
BsuRI	GGCC	3 cut(s)	555, 633, 1085
BtgI	CCRYGG	2 cut(s)	556, 616
BtsCI	GGATG	5 cut(s)	332, 393, 754, 1054, 1141
BtsI	GCAGTG	1 cut(s)	758
BtsIMutI	CAGTG	4 cut(s)	311, 676, 687, 758
Cac8I	GCNNGC	2 cut(s)	74, 1114
CaiI	CAGNNNCTG	1 cut(s)	1145
CciI	TCATGA	3 cut(s)	204, 544, 706
CfoI	GCGC	2 cut(s)	10, 969
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	1083
CseI	GACGC	1 cut(s)	1211
Csp6I	GTAC	4 cut(s)	381, 827, 883, 1154
CspAI	ACCGGT	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	1006, 1041
CviQI	GTAC	4 cut(s)	381, 827, 883, 1154
DdeI	CTNAG	4 cut(s)	144, 735, 931, 1128
DpnI	GATC	6 cut(s)	120, 422, 549, 567, 660, 747
DpnII	GATC	6 cut(s)	118, 420, 547, 565, 658, 745
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	2 cut(s)	553, 631
Eco130I	CCWWGG	1 cut(s)	616
Eco31I	GGTCTC	1 cut(s)	1040
Eco57I	CTGAAG	2 cut(s)	117, 346
Eco91I	GGTNACC	1 cut(s)	833
EcoO65I	GGTNACC	1 cut(s)	833
EcoT14I	CCWWGG	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	616
FbaI	TGATCA	2 cut(s)	547, 565
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	264, 288
FokI	GGATG	5 cut(s)	339, 380, 741, 1061, 1148
Fsp4HI	GCNGC	2 cut(s)	264, 288
FspBI	CTAG	2 cut(s)	1002, 1157
FspI	TGCGCA	1 cut(s)	968
GlaI	GCGC	2 cut(s)	9, 968
GluI	GCNGC	2 cut(s)	264, 288
HaeIII	GGCC	3 cut(s)	555, 633, 1085
HapII	CCGG	3 cut(s)	417, 462, 1133
HgaI	GACGC	1 cut(s)	1211
HhaI	GCGC	2 cut(s)	10, 969
Hin6I	GCGC	2 cut(s)	8, 967
HinP1I	GCGC	2 cut(s)	8, 967
HindIII	AAGCTT	2 cut(s)	70, 170
HinfI	GANTC	2 cut(s)	65, 447
HpaII	CCGG	3 cut(s)	417, 462, 1133
HphI	GGTGA	3 cut(s)	476, 845, 1177
Hpy166II	GTNNAC	5 cut(s)	383, 430, 674, 948, 1066
Hpy188I	TCNGA	6 cut(s)	118, 280, 365, 459, 736, 1215
Hpy188III	TCNNGA	8 cut(s)	18, 205, 324, 397, 545, 707, 1067, 1180
Hpy8I	GTNNAC	5 cut(s)	383, 430, 674, 948, 1066
HpyAV	CCTTC	3 cut(s)	49, 1093, 1156
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	8 cut(s)	43, 263, 287, 296, 500, 808, 918, 1139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	4 cut(s)	144, 735, 931, 1128
HpySE526I	ACGT	1 cut(s)	804
HspAI	GCGC	2 cut(s)	8, 967
Ksp22I	TGATCA	2 cut(s)	547, 565
Kzo9I	GATC	6 cut(s)	118, 420, 547, 565, 658, 745
LmnI	GCTCC	2 cut(s)	740, 869
Lsp1109I	GCAGC	2 cut(s)	275, 299
LweI	GCATC	7 cut(s)	130, 167, 250, 329, 954, 1003, 1126
MaeI	CTAG	2 cut(s)	1002, 1157
MaeII	ACGT	1 cut(s)	804
MalI	GATC	6 cut(s)	120, 422, 549, 567, 660, 747
MboI	GATC	6 cut(s)	118, 420, 547, 565, 658, 745
MboII	GAAGA	3 cut(s)	352, 812, 910
MflI	RGATCY	3 cut(s)	118, 420, 745
MhlI	GDGCHC	2 cut(s)	726, 998
MluCI	AATT	4 cut(s)	297, 366, 936, 1008
MlyI	GAGTC	2 cut(s)	74, 441
MnlI	CCTC	7 cut(s)	325, 730, 848, 973, 1025, 1045, 1176
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	8 cut(s)	48, 209, 325, 398, 561, 615, 660, 711
MspI	CCGG	3 cut(s)	417, 462, 1133
MspR9I	CCNGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	418
NcoI	CCATGG	1 cut(s)	616
NdeII	GATC	6 cut(s)	118, 420, 547, 565, 658, 745
NlaIV	GGNNCC	1 cut(s)	422
NsbI	TGCGCA	1 cut(s)	968
PagI	TCATGA	3 cut(s)	204, 544, 706
PinAI	ACCGGT	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	265, 289
PleI	GAGTC	2 cut(s)	73, 441
PpsI	GAGTC	2 cut(s)	73, 441
PspEI	GGTNACC	1 cut(s)	833
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	1083
PstNI	CAGNNNCTG	1 cut(s)	1145
PsuI	RGATCY	3 cut(s)	118, 420, 745
RsaI	GTAC	4 cut(s)	382, 828, 884, 1155
RsaNI	GTAC	4 cut(s)	381, 827, 883, 1154
RseI	CAYNNNNRTG	8 cut(s)	48, 209, 325, 398, 561, 615, 660, 711
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	2 cut(s)	264, 288
Sau3AI	GATC	6 cut(s)	118, 420, 547, 565, 658, 745
Sau96I	GGNCC	1 cut(s)	1083
SchI	GAGTC	2 cut(s)	74, 441
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	2 cut(s)	726, 998
SfaNI	GCATC	7 cut(s)	130, 167, 250, 329, 954, 1003, 1126
SmiMI	CAYNNNNRTG	8 cut(s)	48, 209, 325, 398, 561, 615, 660, 711
SmlI	CTYRAG	1 cut(s)	1025
SmoI	CTYRAG	1 cut(s)	1025
Sse9I	AATT	4 cut(s)	297, 366, 936, 1008
SsiI	CCGC	1 cut(s)	166
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	1002, 1157
StyD4I	CCNGG	1 cut(s)	416
StyI	CCWWGG	1 cut(s)	616
TaiI	ACGT	1 cut(s)	807
TasI	AATT	4 cut(s)	297, 366, 936, 1008
TatI	WGTACW	1 cut(s)	826
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	4 cut(s)	318, 676, 694, 765
TseI	GCWGC	2 cut(s)	263, 287
TspDTI	ATGAA	4 cut(s)	193, 723, 783, 812
TspRI	CASTG	4 cut(s)	318, 676, 694, 765
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	2 cut(s)	1002, 1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.