Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

53401198 .. 53405510

Gene Structure 4313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG311400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTTGTGGCATTTGCAATTTCTGTGTTCTCAGTTTCGGCATCAGGATGGAAGGCAACTCTATGGCTTCTTAAGGATTGAAATCCTAGGTGCTCTCGTTTCAATCCTTATAATATGGCTCACTGCTGGCATTCTAATTTATGAAGCCATTGAGAGACTTAAGAATGGCAACCCTGGCGAAGTTAAGGGCTCTCTCATGTTTATTGTTTCCACCGTGGGTCTAGTGCTTAACATCGCCATGGCGGTCTTGTTGGGTCATGATCACAACCATGGCAACAACCATGGTGATCATCATCATAACGAGGATCATGATGATGATGATCATACAGATAACAATGGGATACATCACAATCGTCGCAATATGAACCTCCATGGGGCATATCTTCATGTACTTGGGGATATCATTCAGAGCATTGGAGTGATGGTCACCGCAGAGGTCATATGGGCTAAGCCTGAATGGAAGATCGCTGATCTCATATGCACACTAATATTTTCAATAGCTGTGCTGGCTACAACCATCGGCATGCTGCGGAAAATTGTTGGGGTTCTTATGGAGAGCACTCCAAGAGGGATCGACACCTTAAAGCTTGAGAAAGCTTTGTGTGAGCTGGATGCAGTAGTTGCCTGTCATGAACTGCACATATGGTGCATAACTCCTGGGAAGAATTTACTAACTTGCCATCTAATTGTCAACCCAGAAGCTAATTCTTATAGGGTGTTAGAAAATGCTATAAATTATATCAAAACAGAGTACAATATAACTCATGTAACAATTCAAATTGAGCCTCAGCAGCTAGCATCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

268

Amino Acids

30.11

Weight (kDa)

5.98

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	14 - 184	5.5e-26	Cation efflux transmembrane domain
ZT_dimer	PF16916	189 - 262	4.5e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AciI	CCGC	3 cut(s)	242, 429, 529
AclWI	GGATC	2 cut(s)	312, 578
AcsI	RAATTY	1 cut(s)	664
AfaI	GTAC	2 cut(s)	390, 752
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflII	CTTAAG	2 cut(s)	70, 158
AgsI	TTSAA	4 cut(s)	80, 102, 495, 776
AjnI	CCWGG	2 cut(s)	172, 655
AluBI	AGCT	6 cut(s)	500, 586, 596, 607, 701, 793
AluI	AGCT	6 cut(s)	500, 586, 596, 607, 701, 793
Alw21I	GWGCWC	2 cut(s)	94, 560
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	2 cut(s)	312, 578
ApeKI	GCWGC	2 cut(s)	526, 790
ApoI	RAATTY	1 cut(s)	664
AspA2I	CCTAGG	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	296, 418
AsuNHI	GCTAGC	1 cut(s)	793
AvrII	CCTAGG	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	2 cut(s)	94, 560
BbvCI	CCTCAGC	1 cut(s)	786
BbvI	GCAGC	2 cut(s)	513, 802
BccI	CCATC	4 cut(s)	41, 415, 524, 687
BciT130I	CCWGG	2 cut(s)	174, 657
BciVI	GTATCC	1 cut(s)	333
BclI	TGATCA	3 cut(s)	259, 286, 319
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	3 cut(s)	86, 221, 794
BfrI	CTTAAG	2 cut(s)	70, 158
BfuI	GTATCC	1 cut(s)	333
BisI	GCNGC	2 cut(s)	527, 791
BlnI	CCTAGG	1 cut(s)	85
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	2 cut(s)	528, 792
Bme1390I	CCNGG	2 cut(s)	174, 657
BmrFI	CCNGG	2 cut(s)	174, 657
BmsI	GCATC	2 cut(s)	49, 601
BmtI	GCTAGC	1 cut(s)	797
Bpu10I	CCTNAGC	1 cut(s)	786
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	608
BsaBI	GATNNNNATC	3 cut(s)	80, 291, 318
BsaJI	CCNNGG	8 cut(s)	85, 172, 213, 237, 268, 280, 370, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse8I	GATNNNNATC	3 cut(s)	80, 291, 318
BseBI	CCWGG	2 cut(s)	174, 657
BseDI	CCNNGG	8 cut(s)	85, 172, 213, 237, 268, 280, 370, 656
BseGI	GGATG	2 cut(s)	52, 616
BseJI	GATNNNNATC	3 cut(s)	80, 291, 318
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	44, 800
BseXI	GCAGC	2 cut(s)	513, 802
BsgI	GTGCAG	1 cut(s)	620
BsiHKAI	GWGCWC	2 cut(s)	94, 560
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	129
Bsp1286I	GDGCHC	3 cut(s)	94, 191, 560
Bsp143I	GATC	7 cut(s)	259, 286, 304, 319, 462, 469, 570
Bsp1720I	GCTNAGC	1 cut(s)	447
Bsp19I	CCATGG	4 cut(s)	237, 268, 280, 370
BspACI	CCGC	3 cut(s)	242, 429, 529
BspCNI	CTCAG	2 cut(s)	43, 799
BspHI	TCATGA	3 cut(s)	256, 307, 628
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	2 cut(s)	312, 578
BspTI	CTTAAG	2 cut(s)	70, 158
BssECI	CCNNGG	8 cut(s)	85, 172, 213, 237, 268, 280, 370, 656
BssMI	GATC	7 cut(s)	259, 286, 304, 319, 462, 469, 570
BssT1I	CCWWGG	5 cut(s)	85, 237, 268, 280, 370
Bst2UI	CCWGG	2 cut(s)	174, 657
Bst4CI	ACNGT	1 cut(s)	214
BstAFI	CTTAAG	2 cut(s)	70, 158
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	4 cut(s)	127, 507, 524, 795
BstDEI	CTNAG	3 cut(s)	30, 447, 786
BstDSI	CCRYGG	5 cut(s)	213, 237, 268, 280, 370
BstEII	GGTNACC	1 cut(s)	424
BstF5I	GGATG	2 cut(s)	52, 616
BstKTI	GATC	7 cut(s)	262, 289, 307, 322, 465, 472, 573
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	7 cut(s)	259, 286, 304, 319, 462, 469, 570
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 506, 620, 790
BstNI	CCWGG	2 cut(s)	174, 657
BstNSI	RCATGY	1 cut(s)	526
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	172, 655
BstV1I	GCAGC	2 cut(s)	513, 802
BsuI	GTATCC	1 cut(s)	333
BtgI	CCRYGG	5 cut(s)	213, 237, 268, 280, 370
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	52, 616
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	4 cut(s)	127, 507, 524, 795
CciI	TCATGA	3 cut(s)	256, 307, 628
Csp6I	GTAC	2 cut(s)	389, 751
CviQI	GTAC	2 cut(s)	389, 751
DdeI	CTNAG	3 cut(s)	30, 447, 786
DpnI	GATC	7 cut(s)	261, 288, 306, 321, 464, 471, 572
DpnII	GATC	7 cut(s)	259, 286, 304, 319, 462, 469, 570
Eco130I	CCWWGG	5 cut(s)	85, 237, 268, 280, 370
Eco24I	GRGCYC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	400
Eco91I	GGTNACC	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	424
EcoRII	CCWGG	2 cut(s)	172, 655
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	5 cut(s)	85, 237, 268, 280, 370
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	5 cut(s)	85, 237, 268, 280, 370
FauNDI	CATATG	3 cut(s)	440, 476, 641
FbaI	TGATCA	3 cut(s)	259, 286, 319
Fnu4HI	GCNGC	2 cut(s)	527, 791
FokI	GGATG	2 cut(s)	59, 623
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	527, 791
FspBI	CTAG	3 cut(s)	86, 221, 794
GluI	GCNGC	2 cut(s)	527, 791
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	2 cut(s)	584, 594
HphI	GGTGA	2 cut(s)	296, 418
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	4 cut(s)	44, 257, 308, 629
Hpy8I	GTNNAC	1 cut(s)	691
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	5 cut(s)	16, 480, 614, 637, 648
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 506, 620, 790
HpyF3I	CTNAG	3 cut(s)	30, 447, 786
Ksp22I	TGATCA	3 cut(s)	259, 286, 319
Kzo9I	GATC	7 cut(s)	259, 286, 304, 319, 462, 469, 570
Lsp1109I	GCAGC	2 cut(s)	513, 802
LweI	GCATC	2 cut(s)	49, 601
MaeI	CTAG	3 cut(s)	86, 221, 794
MaeIII	GTNAC	2 cut(s)	424, 766
MalI	GATC	7 cut(s)	261, 288, 306, 321, 464, 471, 572
MboI	GATC	7 cut(s)	259, 286, 304, 319, 462, 469, 570
MboII	GAAGA	3 cut(s)	374, 472, 673
MhlI	GDGCHC	3 cut(s)	94, 191, 560
MluCI	AATT	9 cut(s)	17, 135, 534, 664, 684, 703, 733, 771, 777
MnlI	CCTC	5 cut(s)	295, 377, 427, 560, 795
MseI	TTAA	5 cut(s)	71, 159, 183, 228, 581
MslI	CAYNNNNRTG	6 cut(s)	45, 236, 267, 312, 416, 521
MspCI	CTTAAG	2 cut(s)	70, 158
MspR9I	CCNGG	2 cut(s)	174, 657
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	2 cut(s)	174, 657
MwoI	GCNNNNNNNGC	4 cut(s)	174, 506, 620, 790
NcoI	CCATGG	4 cut(s)	237, 268, 280, 370
NdeI	CATATG	3 cut(s)	440, 476, 641
NdeII	GATC	7 cut(s)	259, 286, 304, 319, 462, 469, 570
NheI	GCTAGC	1 cut(s)	793
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	526
PaeI	GCATGC	1 cut(s)	526
PagI	TCATGA	3 cut(s)	256, 307, 628
PctI	GAATGC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	528, 792
PsiI	TTATAA	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	172, 655
PspEI	GGTNACC	1 cut(s)	424
PspGI	CCWGG	2 cut(s)	172, 655
RsaI	GTAC	2 cut(s)	390, 752
RsaNI	GTAC	2 cut(s)	389, 751
RseI	CAYNNNNRTG	6 cut(s)	45, 236, 267, 312, 416, 521
SaqAI	TTAA	5 cut(s)	71, 159, 183, 228, 581
SatI	GCNGC	2 cut(s)	527, 791
Sau3AI	GATC	7 cut(s)	259, 286, 304, 319, 462, 469, 570
ScrFI	CCNGG	2 cut(s)	174, 657
SduI	GDGCHC	3 cut(s)	94, 191, 560
SfaNI	GCATC	2 cut(s)	49, 601
SmiMI	CAYNNNNRTG	6 cut(s)	45, 236, 267, 312, 416, 521
SmlI	CTYRAG	3 cut(s)	70, 158, 587
SmoI	CTYRAG	3 cut(s)	70, 158, 587
SphI	GCATGC	1 cut(s)	526
Sse9I	AATT	9 cut(s)	17, 135, 534, 664, 684, 703, 733, 771, 777
SsiI	CCGC	3 cut(s)	242, 429, 529
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	3 cut(s)	86, 221, 794
StyD4I	CCNGG	2 cut(s)	172, 655
StyI	CCWWGG	5 cut(s)	85, 237, 268, 280, 370
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	573
TasI	AATT	9 cut(s)	17, 135, 534, 664, 684, 703, 733, 771, 777
TatI	WGTACW	2 cut(s)	388, 750
Tru1I	TTAA	5 cut(s)	71, 159, 183, 228, 581
Tru9I	TTAA	5 cut(s)	71, 159, 183, 228, 581
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	526, 790
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	4 cut(s)	156, 374, 377, 645
TspRI	CASTG	1 cut(s)	127
Vha464I	CTTAAG	2 cut(s)	70, 158
XapI	RAATTY	1 cut(s)	664
XceI	RCATGY	1 cut(s)	526
XmaJI	CCTAGG	1 cut(s)	85
XspI	CTAG	3 cut(s)	86, 221, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.