Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

54446048 .. 54447335

Gene Structure 1288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCAACCCCGGCGAAGTTAATTAAGGGCTCTCTCATGTTTATTGTTTCCACCGTGGGTTTAGTGCTTAACATCGCCATGGCGGTCTTGTTGGGTCATGAGCACAACCATGGCAACAGCCATGGTGGTCATCATCATAACGAGGAACATGATGATGATGATCATACCGATAGCAATGGGGCACATCACAATCGTCGCAATATGAACCTCCATGGGGCATATCTTCATGTACTTGGGGATATCATTCAGAGCATTGGACTGATGGTCACCGCAGTGGTCATATGGGCTAATCCTGAATGGAAGATCACTGATCTCATATGCACACTAGTATTTTCAATAGCTGTGCTGGCTACAACCATCGGCATGCTGCGGAAAATTGTTGGGGTTCTTATGGAGAGCACTCCAAGAGGGATCGACACCTTACAGCTTGAGAAAGCTTTGTGTGAGCTGGATGCAGTAGTTGCCTGTCATGAACTGCACATATGGTGCATAATTCCTGGAAAGAATTTACTAACTTGCCATCTAATTGTCAACCCAGAAGTTAATTCTTATAGGGTGTTAGAAAATGCTATAAATTATATCAAAACAGAGTACAATATAACTCATTTGAAAACCTTCAATCTTTCCCTTTTGGACCAACTGGTTCCTTCTACTTACATTCCATTGCTACTCTTCTATACCACAAGTGATCATACTGCTGCAGCTGGAAGAACCTTGCAGCTAAAGAAATCGCTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

246

Amino Acids

27.21

Weight (kDa)

6.29

Isoelectric Point (pI)

28.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	6 - 131	5.3e-14	Cation efflux transmembrane domain
ZT_dimer	PF16916	136 - 202	5e-07	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	83, 270, 370
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	505
AfaI	GTAC	2 cut(s)	231, 593
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	336, 610, 619
AhdI	GACNNNNNGTC	1 cut(s)	263
AhlI	ACTAGT	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	496
AleI	CACNNNNGTG	1 cut(s)	272
AluBI	AGCT	6 cut(s)	341, 427, 437, 448, 704, 721
AluI	AGCT	6 cut(s)	341, 427, 437, 448, 704, 721
Alw21I	GWGCWC	2 cut(s)	105, 401
AlwI	GGATC	1 cut(s)	419
ApeKI	GCWGC	4 cut(s)	367, 698, 701, 718
ApoI	RAATTY	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	614
AspS9I	GGNCC	1 cut(s)	634
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	634
BaeGI	GKGCMC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	105, 401
BbvI	GCAGC	4 cut(s)	354, 685, 713, 730
BccI	CCATC	3 cut(s)	256, 365, 528
BciT130I	CCWGG	1 cut(s)	498
BclI	TGATCA	2 cut(s)	160, 688
BcnI	CCSGG	1 cut(s)	11
BcuI	ACTAGT	1 cut(s)	325
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	699
BisI	GCNGC	4 cut(s)	368, 699, 702, 719
BlsI	GCNGC	4 cut(s)	369, 700, 703, 720
Bme1390I	CCNGG	2 cut(s)	11, 498
Bme18I	GGWCC	1 cut(s)	634
BmeRI	GACNNNNNGTC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	634
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	2 cut(s)	11, 498
BmsI	GCATC	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	6 cut(s)	9, 54, 78, 109, 121, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	645
Bse3DI	GCAATG	2 cut(s)	181, 662
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	6 cut(s)	9, 54, 78, 109, 121, 211
BseGI	GGATG	1 cut(s)	457
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	2 cut(s)	181, 662
BseNI	ACTGG	1 cut(s)	645
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	4 cut(s)	354, 685, 713, 730
BsgI	GTGCAG	1 cut(s)	461
BsiHKAI	GWGCWC	2 cut(s)	105, 401
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	214
Bsp1286I	GDGCHC	4 cut(s)	32, 105, 184, 401
Bsp143I	GATC	5 cut(s)	160, 303, 310, 411, 688
Bsp19I	CCATGG	4 cut(s)	78, 109, 121, 211
BspACI	CCGC	3 cut(s)	83, 270, 370
BspHI	TCATGA	2 cut(s)	97, 469
BspLI	GGNNCC	1 cut(s)	645
BspMAI	CTGCAG	1 cut(s)	703
BspPI	GGATC	1 cut(s)	419
BsrDI	GCAATG	2 cut(s)	181, 662
BsrI	ACTGG	1 cut(s)	645
BssECI	CCNNGG	6 cut(s)	9, 54, 78, 109, 121, 211
BssMI	GATC	5 cut(s)	160, 303, 310, 411, 688
BssT1I	CCWWGG	4 cut(s)	78, 109, 121, 211
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	348, 365
BstDSI	CCRYGG	5 cut(s)	54, 78, 109, 121, 211
BstEII	GGTNACC	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	5 cut(s)	163, 306, 313, 414, 691
BstMBI	GATC	5 cut(s)	160, 303, 310, 411, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 347, 461
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	1 cut(s)	367
BstPI	GGTNACC	1 cut(s)	265
BstSCI	CCNGG	2 cut(s)	9, 496
BstSFI	CTRYAG	1 cut(s)	699
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	4 cut(s)	354, 685, 713, 730
BtgI	CCRYGG	5 cut(s)	54, 78, 109, 121, 211
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	279, 306
Cac8I	GCNNGC	2 cut(s)	348, 365
CciI	TCATGA	2 cut(s)	97, 469
Cfr13I	GGNCC	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	230, 592
CviQI	GTAC	2 cut(s)	230, 592
DpnI	GATC	5 cut(s)	162, 305, 312, 413, 690
DpnII	GATC	5 cut(s)	160, 303, 310, 411, 688
DriI	GACNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	677
Eam1105I	GACNNNNNGTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	677
Eco130I	CCWWGG	4 cut(s)	78, 109, 121, 211
Eco24I	GRGCYC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	634
Eco91I	GGTNACC	1 cut(s)	265
EcoO65I	GGTNACC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	496
EcoRV	GATATC	1 cut(s)	241
EcoT14I	CCWWGG	4 cut(s)	78, 109, 121, 211
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	4 cut(s)	78, 109, 121, 211
FauNDI	CATATG	3 cut(s)	281, 317, 482
FbaI	TGATCA	2 cut(s)	160, 688
Fnu4HI	GCNGC	4 cut(s)	368, 699, 702, 719
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	4 cut(s)	368, 699, 702, 719
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	4 cut(s)	368, 699, 702, 719
HapII	CCGG	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	1 cut(s)	435
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	3 cut(s)	98, 293, 470
Hpy8I	GTNNAC	1 cut(s)	532
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	2 cut(s)	625, 657
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	6 cut(s)	321, 455, 478, 489, 701, 718
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 347, 461
Ksp22I	TGATCA	2 cut(s)	160, 688
Kzo9I	GATC	5 cut(s)	160, 303, 310, 411, 688
Lsp1109I	GCAGC	4 cut(s)	354, 685, 713, 730
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	5 cut(s)	162, 305, 312, 413, 690
MboI	GATC	5 cut(s)	160, 303, 310, 411, 688
MboII	GAAGA	4 cut(s)	215, 313, 664, 720
MhlI	GDGCHC	4 cut(s)	32, 105, 184, 401
MluCI	AATT	7 cut(s)	21, 375, 492, 505, 525, 544, 574
MnlI	CCTC	3 cut(s)	136, 218, 401
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	5 cut(s)	20, 24, 69, 543, 739
MslI	CAYNNNNRTG	5 cut(s)	77, 108, 153, 272, 362
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	11, 498
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	11, 347, 461
NciI	CCSGG	1 cut(s)	11
NcoI	CCATGG	4 cut(s)	78, 109, 121, 211
NdeI	CATATG	3 cut(s)	281, 317, 482
NdeII	GATC	5 cut(s)	160, 303, 310, 411, 688
NlaIV	GGNNCC	1 cut(s)	645
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	367
OliI	CACNNNNGTG	1 cut(s)	272
PacI	TTAATTAA	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	367
PagI	TCATGA	2 cut(s)	97, 469
PdmI	GAANNNNTTC	1 cut(s)	614
PfoI	TCCNGGA	1 cut(s)	496
PkrI	GCNGC	4 cut(s)	369, 700, 703, 720
Psp6I	CCWGG	1 cut(s)	496
PspEI	GGTNACC	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	645
PspPI	GGNCC	1 cut(s)	634
PstI	CTGCAG	1 cut(s)	703
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	2 cut(s)	231, 593
RsaNI	GTAC	2 cut(s)	230, 592
RseI	CAYNNNNRTG	5 cut(s)	77, 108, 153, 272, 362
SaqAI	TTAA	5 cut(s)	20, 24, 69, 543, 739
SatI	GCNGC	4 cut(s)	368, 699, 702, 719
Sau3AI	GATC	5 cut(s)	160, 303, 310, 411, 688
Sau96I	GGNCC	1 cut(s)	634
ScrFI	CCNGG	2 cut(s)	11, 498
SduI	GDGCHC	4 cut(s)	32, 105, 184, 401
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	5 cut(s)	77, 108, 153, 272, 362
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SpeI	ACTAGT	1 cut(s)	325
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	7 cut(s)	21, 375, 492, 505, 525, 544, 574
SsiI	CCGC	3 cut(s)	83, 270, 370
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	9, 496
StyI	CCWWGG	4 cut(s)	78, 109, 121, 211
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	414
TasI	AATT	7 cut(s)	21, 375, 492, 505, 525, 544, 574
TatI	WGTACW	2 cut(s)	229, 591
Tru1I	TTAA	5 cut(s)	20, 24, 69, 543, 739
Tru9I	TTAA	5 cut(s)	20, 24, 69, 543, 739
TscAI	CASTG	2 cut(s)	279, 313
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	4 cut(s)	367, 698, 701, 718
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	215, 218, 486
TspRI	CASTG	2 cut(s)	279, 313
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	1 cut(s)	367
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.