Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

6765111 .. 6767692

Gene Structure 2582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG089900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGAAGCGCAACATTCTGGACACGGGCATATATTTGAAGTGCATGGAGATGTGAAAGATATTGAGTCAAGATTGCGTGGTAGCAAGATTTGTACTGAAGCACCATGTGGATTTTCAGATCCTAATAACAGTTCCAAAGATGCTAAGGAACGGTCAGCATCAATGCGGAAGCTTTTGATAGCAGTTGTGCTCTGTGTCATTTTCATGACTGTGGAAGTTGTTGGGGGTATCAAAGCCAATAGTCTTGCTATTATGACTGATGCAGCTCATCTGTTGTCAGATGTTGCAGCATTTGCAATTTCCCTGTTCTCACTGTGGGCATCAGGATGGGAGGCAACTCCACGCCAGACTTATGGCTTCTTCAGAATTGAAATACTCGGTACACTTGTTTCCATCCAGATGATATGGCTTCTTACTGGGATCCTTGTCTACGAAGCCATTGACAGACTCATCTATCAGACCGGTGAAGTTCAGGGCTTTCTCATGTTTGTTGTTTCTGCGTTTGGTTTAGTGGTTAATATTGCTATGGCAGTCTTGTTGGGTCACGATCACGGCCACGGCCATGGCCACGGGCATGATCACGGTCACGGTCACGGTCACGGCCATGGCCACGGTCACGGCCACGACCACAGCCATAGTGACCACGATCATGGACACAGTGAACATCATCATAACACTGATAATCATCACGATCATGAACATGATGACGAGCACCATCATTCTGAGGGAGCAGATCTCACACATCCACTGCTCAATGAAAATGCAAGAAAGAACAAGCAACGAAATATCAACGTGCAGGGGGCTTATCTTCATGTACTCGGTGACCTCATTCAAAGTATTGGAGTTATGATAGGTGGAGCAGTTATATGGTACAAGCCAGAATGGAAGATTATTGACTTGATATGCACCCTTGTATTCTCAGTAATTGTGCTGTGGACAACAATCAATATGATGCGCAACATTTTGGAGGTTCTTATGGAGAGCACTCCTAGAGAAATTGATGCCACAAAACTTGAGAGAGGTCTCTGTGAGATGGATGAGGTTGTGGCAGTTCATGAACTACATATTTGGGCCATTACTGTTGGGAAGGTGCTACTGGCTTGCCATGTCATTGTTAAGCCGGATGCAGATACTGACATGGTACTAGAGAAGGTGATAGACTATATCAAGAGGGAATATAACATCACTCATGTTACTATTCAGATAGAGCGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

405

Amino Acids

45.16

Weight (kDa)

5.94

Isoelectric Point (pI)

24.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	58 - 326	7.1e-42	Cation efflux transmembrane domain
Zip	PF02535	157 - 280	3.2e-06	ZIP Zinc transporter
ZT_dimer	PF16916	330 - 404	4.5e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	956
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	3 cut(s)	113, 415, 428
AcoI	YGGCCR	6 cut(s)	553, 559, 565, 601, 607, 619
AcuI	CTGAAG	2 cut(s)	117, 346
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	5 cut(s)	94, 382, 816, 872, 1143
AgeI	ACCGGT	1 cut(s)	461
AgsI	TTSAA	3 cut(s)	38, 371, 833
AluBI	AGCT	2 cut(s)	172, 266
AluI	AGCT	2 cut(s)	172, 266
Alw21I	GWGCWC	3 cut(s)	192, 714, 986
Alw26I	GTCTC	1 cut(s)	1028
AlwI	GGATC	3 cut(s)	113, 415, 428
AlwNI	CAGNNNCTG	1 cut(s)	1133
AoxI	GGCC	7 cut(s)	553, 559, 565, 601, 607, 619, 1071
ApeKI	GCWGC	2 cut(s)	263, 287
AsiGI	ACCGGT	1 cut(s)	461
AspLEI	GCGC	2 cut(s)	10, 957
AspS9I	GGNCC	1 cut(s)	1071
AsuHPI	GGTGA	3 cut(s)	476, 833, 1165
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BalI	TGGCCA	2 cut(s)	567, 609
BamHI	GGATCC	1 cut(s)	420
Bbv12I	GWGCWC	3 cut(s)	192, 714, 986
BbvI	GCAGC	2 cut(s)	275, 299
BccI	CCATC	4 cut(s)	321, 401, 723, 1027
BceAI	ACGGC	4 cut(s)	568, 574, 616, 634
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	1 cut(s)	1028
BfaI	CTAG	2 cut(s)	990, 1145
BglII	AGATCT	1 cut(s)	733
BisI	GCNGC	2 cut(s)	264, 288
BlsI	GCNGC	2 cut(s)	265, 289
BmgT120I	GGNCC	1 cut(s)	1071
BmiI	GGNNCC	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	7 cut(s)	130, 167, 250, 329, 942, 991, 1114
BmuI	ACTGGG	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	720, 752
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	1034
BsaBI	GATNNNNATC	1 cut(s)	684
BsaI	GGTCTC	1 cut(s)	1028
BsaJI	CCNNGG	5 cut(s)	556, 562, 568, 604, 610
BsaWI	WCCGGW	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	421, 1101
Bse8I	GATNNNNATC	1 cut(s)	684
BseDI	CCNNGG	5 cut(s)	556, 562, 568, 604, 610
BseGI	GGATG	5 cut(s)	332, 393, 742, 1042, 1129
BseJI	GATNNNNATC	1 cut(s)	684
BseMII	CTCAG	2 cut(s)	714, 933
BseNI	ACTGG	2 cut(s)	421, 1101
BseXI	GCAGC	2 cut(s)	275, 299
BsgI	GTGCAG	1 cut(s)	815
BshFI	GGCC	7 cut(s)	555, 561, 567, 603, 609, 621, 1073
BshTI	ACCGGT	1 cut(s)	461
BsiHKAI	GWGCWC	3 cut(s)	192, 714, 986
BsiSI	CCGG	2 cut(s)	462, 1121
BsmAI	GTCTC	1 cut(s)	1028
BsnI	GGCC	7 cut(s)	555, 561, 567, 603, 609, 621, 1073
Bso31I	GGTCTC	1 cut(s)	1028
Bsp1286I	GDGCHC	3 cut(s)	192, 714, 986
Bsp143I	GATC	7 cut(s)	118, 420, 547, 577, 646, 691, 733
Bsp19I	CCATGG	2 cut(s)	562, 604
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	7 cut(s)	555, 561, 567, 603, 609, 621, 1073
BspCNI	CTCAG	2 cut(s)	715, 932
BspHI	TCATGA	3 cut(s)	204, 694, 1054
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	3 cut(s)	113, 415, 428
BspTNI	GGTCTC	1 cut(s)	1028
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	421, 1101
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	5 cut(s)	556, 562, 568, 604, 610
BssMI	GATC	7 cut(s)	118, 420, 547, 577, 646, 691, 733
BssT1I	CCWWGG	2 cut(s)	562, 604
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	1102
BstDEI	CTNAG	3 cut(s)	144, 723, 919
BstDSI	CCRYGG	5 cut(s)	556, 562, 568, 604, 610
BstEII	GGTNACC	1 cut(s)	821
BstF5I	GGATG	5 cut(s)	332, 393, 742, 1042, 1129
BstHHI	GCGC	2 cut(s)	10, 957
BstKTI	GATC	7 cut(s)	121, 423, 550, 580, 649, 694, 736
BstMAI	GTCTC	1 cut(s)	1028
BstMBI	GATC	7 cut(s)	118, 420, 547, 577, 646, 691, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstPI	GGTNACC	1 cut(s)	821
BstV1I	GCAGC	2 cut(s)	275, 299
BstX2I	RGATCY	3 cut(s)	118, 420, 733
BstXI	CCANNNNNNTGG	3 cut(s)	353, 563, 650
BstYI	RGATCY	3 cut(s)	118, 420, 733
BsuRI	GGCC	7 cut(s)	555, 561, 567, 603, 609, 621, 1073
BtgI	CCRYGG	5 cut(s)	556, 562, 568, 604, 610
BtsCI	GGATG	5 cut(s)	332, 393, 742, 1042, 1129
BtsI	GCAGTG	1 cut(s)	746
BtsIMutI	CAGTG	4 cut(s)	311, 664, 675, 746
Cac8I	GCNNGC	1 cut(s)	1102
CaiI	CAGNNNCTG	1 cut(s)	1133
CciI	TCATGA	3 cut(s)	204, 694, 1054
CfoI	GCGC	2 cut(s)	10, 957
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	1071
CseI	GACGC	1 cut(s)	1199
Csp6I	GTAC	5 cut(s)	93, 381, 815, 871, 1142
CspAI	ACCGGT	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	994, 1029
CviQI	GTAC	5 cut(s)	93, 381, 815, 871, 1142
DdeI	CTNAG	3 cut(s)	144, 723, 919
DpnI	GATC	7 cut(s)	120, 422, 549, 579, 648, 693, 735
DpnII	GATC	7 cut(s)	118, 420, 547, 577, 646, 691, 733
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	6 cut(s)	553, 559, 565, 601, 607, 619
Eco130I	CCWWGG	2 cut(s)	562, 604
Eco31I	GGTCTC	1 cut(s)	1028
Eco57I	CTGAAG	2 cut(s)	117, 346
Eco91I	GGTNACC	1 cut(s)	821
EcoO65I	GGTNACC	1 cut(s)	821
EcoT14I	CCWWGG	2 cut(s)	562, 604
ErhI	CCWWGG	2 cut(s)	562, 604
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	264, 288
FokI	GGATG	5 cut(s)	339, 380, 729, 1049, 1136
Fsp4HI	GCNGC	2 cut(s)	264, 288
FspBI	CTAG	2 cut(s)	990, 1145
FspI	TGCGCA	1 cut(s)	956
GlaI	GCGC	2 cut(s)	9, 956
GluI	GCNGC	2 cut(s)	264, 288
HaeIII	GGCC	7 cut(s)	555, 561, 567, 603, 609, 621, 1073
HapII	CCGG	2 cut(s)	462, 1121
HgaI	GACGC	1 cut(s)	1199
HhaI	GCGC	2 cut(s)	10, 957
Hin6I	GCGC	2 cut(s)	8, 955
HinP1I	GCGC	2 cut(s)	8, 955
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	2 cut(s)	65, 447
HpaII	CCGG	2 cut(s)	462, 1121
HphI	GGTGA	3 cut(s)	476, 833, 1165
Hpy166II	GTNNAC	4 cut(s)	383, 430, 662, 936
Hpy188I	TCNGA	6 cut(s)	118, 280, 365, 459, 724, 1203
Hpy8I	GTNNAC	4 cut(s)	383, 430, 662, 936
HpyAV	CCTTC	2 cut(s)	1081, 1144
HpyCH4IV	ACGT	1 cut(s)	792
HpyCH4V	TGCA	8 cut(s)	43, 263, 287, 296, 764, 796, 906, 1127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	3 cut(s)	144, 723, 919
HpySE526I	ACGT	1 cut(s)	792
HspAI	GCGC	2 cut(s)	8, 955
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	7 cut(s)	118, 420, 547, 577, 646, 691, 733
LmnI	GCTCC	2 cut(s)	728, 857
Lsp1109I	GCAGC	2 cut(s)	275, 299
LweI	GCATC	7 cut(s)	130, 167, 250, 329, 942, 991, 1114
MaeI	CTAG	2 cut(s)	990, 1145
MaeII	ACGT	1 cut(s)	792
MaeIII	GTNAC	8 cut(s)	542, 584, 590, 596, 614, 638, 821, 1192
MalI	GATC	7 cut(s)	120, 422, 549, 579, 648, 693, 735
MboI	GATC	7 cut(s)	118, 420, 547, 577, 646, 691, 733
MboII	GAAGA	3 cut(s)	352, 800, 898
MflI	RGATCY	3 cut(s)	118, 420, 733
MhlI	GDGCHC	3 cut(s)	192, 714, 986
MlsI	TGGCCA	2 cut(s)	567, 609
MluCI	AATT	4 cut(s)	297, 366, 924, 996
MluNI	TGGCCA	2 cut(s)	567, 609
MlyI	GAGTC	2 cut(s)	74, 441
MnlI	CCTC	7 cut(s)	325, 718, 836, 961, 1013, 1033, 1164
Mox20I	TGGCCA	2 cut(s)	567, 609
MscI	TGGCCA	2 cut(s)	567, 609
MseI	TTAA	2 cut(s)	516, 1116
Msp20I	TGGCCA	2 cut(s)	567, 609
MspI	CCGG	2 cut(s)	462, 1121
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	2 cut(s)	562, 604
NdeII	GATC	7 cut(s)	118, 420, 547, 577, 646, 691, 733
NlaIV	GGNNCC	1 cut(s)	422
NmuCI	GTSAC	7 cut(s)	542, 584, 590, 596, 614, 638, 821
NsbI	TGCGCA	1 cut(s)	956
PagI	TCATGA	3 cut(s)	204, 694, 1054
PinAI	ACCGGT	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	265, 289
PleI	GAGTC	2 cut(s)	73, 441
PpsI	GAGTC	2 cut(s)	73, 441
PspEI	GGTNACC	1 cut(s)	821
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	1071
PstNI	CAGNNNCTG	1 cut(s)	1133
PsuI	RGATCY	3 cut(s)	118, 420, 733
RsaI	GTAC	5 cut(s)	94, 382, 816, 872, 1143
RsaNI	GTAC	5 cut(s)	93, 381, 815, 871, 1142
SaqAI	TTAA	2 cut(s)	516, 1116
SatI	GCNGC	2 cut(s)	264, 288
Sau3AI	GATC	7 cut(s)	118, 420, 547, 577, 646, 691, 733
Sau96I	GGNCC	1 cut(s)	1071
SchI	GAGTC	2 cut(s)	74, 441
SduI	GDGCHC	3 cut(s)	192, 714, 986
SfaNI	GCATC	7 cut(s)	130, 167, 250, 329, 942, 991, 1114
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	4 cut(s)	297, 366, 924, 996
SsiI	CCGC	1 cut(s)	166
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	990, 1145
StyI	CCWWGG	2 cut(s)	562, 604
TaiI	ACGT	1 cut(s)	795
TasI	AATT	4 cut(s)	297, 366, 924, 996
TatI	WGTACW	2 cut(s)	92, 814
Tru1I	TTAA	2 cut(s)	516, 1116
Tru9I	TTAA	2 cut(s)	516, 1116
TscAI	CASTG	4 cut(s)	318, 664, 682, 753
TseFI	GTSAC	7 cut(s)	542, 584, 590, 596, 614, 638, 821
TseI	GCWGC	2 cut(s)	263, 287
Tsp45I	GTSAC	7 cut(s)	542, 584, 590, 596, 614, 638, 821
TspDTI	ATGAA	6 cut(s)	193, 711, 771, 800, 1043, 1071
TspRI	CASTG	4 cut(s)	318, 664, 682, 753
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	2 cut(s)	990, 1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.