Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

7692662 .. 7695533

Gene Structure 2872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG091500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGAAGCGCAACATTCTGGACACGGGCATATATTTGAAGTGCATGGAGATGTGAAAGATATTGAGTCAAGATTGCGTGGTAGCAAGATTTGTACTGAAGCACCATGTGGATTTTCAGATCCTAATAACAGTTCCAAAGATGCTAAGGAACGGTCAGCATCAATGCGGAAGCTTTTGATAGCAGTTGTGCTCTGTGTCGTTTTCATGACTGTGGAAGTTGTTGGGGGTATCAAAGCCAATAGTCTTGCTATTATGACTGATGCAGCTCATCTATTGTCAGATGTTGCAGCATTTGCAATTTCCCTGTTCTCACTGTGGGCATCAGGATGGGAGGCAACTCCACGCCAGACTTATGGCTTCTTCAGAATTGAAATACTCGGTACACTTGTTTCCATCCAGATGATATGGCTTCTTACTGGGATCCTTGTCTACGAAGCCATTGACAGACTCATCTATCAGACCGGTGAAGTTCAGGGCTTTCTCATGTTTGTTGTTTCTGCGTTTGGTTTAGTGGTTAATATTGCTATGGCAGTCTTGTTGGGTCACGATCACGGCCACGGCCATGGCCATGGGCATGATCACGGTCACGGCCACGGCCATGGCCATGGGCACGGCCACGGTCACGGCCACGGCCACGACCACAGCCACAGCCACAGCCATAGTGACCACGATCATGGACACAGTGAACATCATCATAACACTGATAATCATCACGATCATGAACATGATGACGAGCACCATCATTCTGAGGGAGCAGATCTCACACGTCCACTGCTCACTGAAAATGCAAGAAAGAACAAGCAACGAAATATCAACGTGCAGGGGGCTTATCTTCATGTACTCGGTGACCTCATTCAAAGTATTGGAGTTATGATAGGTGGAGCAGTTATATGGTACAAGCCAGAATGGAAGATTATTGACTTGATATGCACCCTTGTATTCTCAGTAATTGTGCTGTGGACAACAATCAATATGATGCGCAACATTTTGGAGGTTCTTATGGAGAGCACTCCTAGAGAAATTGATGCCACAAAACTTGAGAGAGGTCTCTGTGAGATGGATGAGGTTGTGGCAGTTCATGAACTACATATTTGGGCCATTACTGTCGGGAAGGTGCTACTGGCTTGCCATGTCATTGTTAAGCCGGATGCAGATACTGACATGGTACTAGAGAAGGTGATAGACTATATCAAGAGGGAATATAACATCACTCATGTTACTATTCAGATAGAGCGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

413

Amino Acids

45.99

Weight (kDa)

6.03

Isoelectric Point (pI)

24.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	58 - 334	3.1e-35	Cation efflux transmembrane domain
Zip	PF02535	157 - 288	2.7e-06	ZIP Zinc transporter
ZT_dimer	PF16916	338 - 412	4.7e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	980
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	3 cut(s)	113, 415, 428
AcoI	YGGCCR	9 cut(s)	553, 559, 565, 589, 595, 601, 613, 625, 631
AcuI	CTGAAG	2 cut(s)	117, 346
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	5 cut(s)	94, 382, 840, 896, 1167
AflIII	ACRYGT	1 cut(s)	764
AgeI	ACCGGT	1 cut(s)	461
AgsI	TTSAA	3 cut(s)	38, 371, 857
AjiI	CACGTC	1 cut(s)	767
AluBI	AGCT	2 cut(s)	172, 266
AluI	AGCT	2 cut(s)	172, 266
Alw21I	GWGCWC	3 cut(s)	192, 738, 1010
Alw26I	GTCTC	1 cut(s)	1052
AlwI	GGATC	3 cut(s)	113, 415, 428
AlwNI	CAGNNNCTG	1 cut(s)	1157
ApeKI	GCWGC	2 cut(s)	263, 287
AsiGI	ACCGGT	1 cut(s)	461
AspLEI	GCGC	2 cut(s)	10, 981
AspS9I	GGNCC	1 cut(s)	1095
AsuHPI	GGTGA	3 cut(s)	476, 857, 1189
BaeGI	GKGCMC	1 cut(s)	612
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BalI	TGGCCA	2 cut(s)	567, 603
BamHI	GGATCC	1 cut(s)	420
Bbv12I	GWGCWC	3 cut(s)	192, 738, 1010
BbvI	GCAGC	2 cut(s)	275, 299
BccI	CCATC	4 cut(s)	321, 401, 747, 1051
BceAI	ACGGC	7 cut(s)	568, 574, 604, 610, 628, 640, 646
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	1 cut(s)	1052
BfaI	CTAG	2 cut(s)	1014, 1169
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	2 cut(s)	264, 288
BlsI	GCNGC	2 cut(s)	265, 289
BmgBI	CACGTC	1 cut(s)	767
BmgT120I	GGNCC	1 cut(s)	1095
BmiI	GGNNCC	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	7 cut(s)	130, 167, 250, 329, 966, 1015, 1138
BmuI	ACTGGG	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	744, 776
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	1058
BsaBI	GATNNNNATC	1 cut(s)	708
BsaI	GGTCTC	1 cut(s)	1052
BsaJI	CCNNGG	8 cut(s)	556, 562, 568, 592, 598, 604, 616, 628
BsaWI	WCCGGW	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	421, 1125
Bse8I	GATNNNNATC	1 cut(s)	708
BseDI	CCNNGG	8 cut(s)	556, 562, 568, 592, 598, 604, 616, 628
BseGI	GGATG	4 cut(s)	332, 393, 1066, 1153
BseJI	GATNNNNATC	1 cut(s)	708
BseMII	CTCAG	2 cut(s)	738, 957
BseNI	ACTGG	2 cut(s)	421, 1125
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	2 cut(s)	275, 299
BsgI	GTGCAG	1 cut(s)	839
BshTI	ACCGGT	1 cut(s)	461
BsiHKAI	GWGCWC	3 cut(s)	192, 738, 1010
BsiSI	CCGG	2 cut(s)	462, 1145
BsmAI	GTCTC	1 cut(s)	1052
Bso31I	GGTCTC	1 cut(s)	1052
Bsp1286I	GDGCHC	4 cut(s)	192, 612, 738, 1010
Bsp143I	GATC	7 cut(s)	118, 420, 547, 577, 670, 715, 757
Bsp19I	CCATGG	4 cut(s)	562, 568, 598, 604
BspACI	CCGC	1 cut(s)	166
BspCNI	CTCAG	2 cut(s)	739, 956
BspHI	TCATGA	3 cut(s)	204, 718, 1078
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	3 cut(s)	113, 415, 428
BspTNI	GGTCTC	1 cut(s)	1052
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	421, 1125
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	8 cut(s)	556, 562, 568, 592, 598, 604, 616, 628
BssMI	GATC	7 cut(s)	118, 420, 547, 577, 670, 715, 757
BssT1I	CCWWGG	4 cut(s)	562, 568, 598, 604
Bst4CI	ACNGT	8 cut(s)	131, 153, 211, 315, 584, 620, 683, 1105
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	1126
BstDEI	CTNAG	3 cut(s)	144, 747, 943
BstDSI	CCRYGG	8 cut(s)	556, 562, 568, 592, 598, 604, 616, 628
BstEII	GGTNACC	1 cut(s)	845
BstF5I	GGATG	4 cut(s)	332, 393, 1066, 1153
BstHHI	GCGC	2 cut(s)	10, 981
BstKTI	GATC	7 cut(s)	121, 423, 550, 580, 673, 718, 760
BstMAI	GTCTC	1 cut(s)	1052
BstMBI	GATC	7 cut(s)	118, 420, 547, 577, 670, 715, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstPI	GGTNACC	1 cut(s)	845
BstSLI	GKGCMC	1 cut(s)	612
BstV1I	GCAGC	2 cut(s)	275, 299
BstX2I	RGATCY	3 cut(s)	118, 420, 757
BstXI	CCANNNNNNTGG	6 cut(s)	353, 563, 569, 599, 605, 674
BstYI	RGATCY	3 cut(s)	118, 420, 757
BtgI	CCRYGG	8 cut(s)	556, 562, 568, 592, 598, 604, 616, 628
BtrI	CACGTC	1 cut(s)	767
BtsCI	GGATG	4 cut(s)	332, 393, 1066, 1153
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	5 cut(s)	311, 688, 699, 770, 777
Cac8I	GCNNGC	1 cut(s)	1126
CaiI	CAGNNNCTG	1 cut(s)	1157
CciI	TCATGA	3 cut(s)	204, 718, 1078
CfoI	GCGC	2 cut(s)	10, 981
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	1095
CseI	GACGC	1 cut(s)	1223
Csp6I	GTAC	5 cut(s)	93, 381, 839, 895, 1166
CspAI	ACCGGT	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	1018, 1053
CviQI	GTAC	5 cut(s)	93, 381, 839, 895, 1166
DdeI	CTNAG	3 cut(s)	144, 747, 943
DpnI	GATC	7 cut(s)	120, 422, 549, 579, 672, 717, 759
DpnII	GATC	7 cut(s)	118, 420, 547, 577, 670, 715, 757
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	9 cut(s)	553, 559, 565, 589, 595, 601, 613, 625, 631
Eco130I	CCWWGG	4 cut(s)	562, 568, 598, 604
Eco31I	GGTCTC	1 cut(s)	1052
Eco57I	CTGAAG	2 cut(s)	117, 346
Eco91I	GGTNACC	1 cut(s)	845
EcoO65I	GGTNACC	1 cut(s)	845
EcoT14I	CCWWGG	4 cut(s)	562, 568, 598, 604
ErhI	CCWWGG	4 cut(s)	562, 568, 598, 604
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	264, 288
FokI	GGATG	4 cut(s)	339, 380, 1073, 1160
Fsp4HI	GCNGC	2 cut(s)	264, 288
FspBI	CTAG	2 cut(s)	1014, 1169
FspI	TGCGCA	1 cut(s)	980
GlaI	GCGC	2 cut(s)	9, 980
GluI	GCNGC	2 cut(s)	264, 288
HapII	CCGG	2 cut(s)	462, 1145
HgaI	GACGC	1 cut(s)	1223
HhaI	GCGC	2 cut(s)	10, 981
Hin6I	GCGC	2 cut(s)	8, 979
HinP1I	GCGC	2 cut(s)	8, 979
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	2 cut(s)	65, 447
HpaII	CCGG	2 cut(s)	462, 1145
HphI	GGTGA	3 cut(s)	476, 857, 1189
Hpy166II	GTNNAC	5 cut(s)	383, 430, 686, 770, 960
Hpy188I	TCNGA	6 cut(s)	118, 280, 365, 459, 748, 1227
Hpy8I	GTNNAC	5 cut(s)	383, 430, 686, 770, 960
HpyAV	CCTTC	2 cut(s)	1105, 1168
HpyCH4III	ACNGT	8 cut(s)	131, 153, 211, 315, 584, 620, 683, 1105
HpyCH4IV	ACGT	2 cut(s)	766, 816
HpyCH4V	TGCA	8 cut(s)	43, 263, 287, 296, 788, 820, 930, 1151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	3 cut(s)	144, 747, 943
HpySE526I	ACGT	2 cut(s)	766, 816
HspAI	GCGC	2 cut(s)	8, 979
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	7 cut(s)	118, 420, 547, 577, 670, 715, 757
LmnI	GCTCC	2 cut(s)	752, 881
Lsp1109I	GCAGC	2 cut(s)	275, 299
LweI	GCATC	7 cut(s)	130, 167, 250, 329, 966, 1015, 1138
MaeI	CTAG	2 cut(s)	1014, 1169
MaeII	ACGT	2 cut(s)	766, 816
MaeIII	GTNAC	6 cut(s)	542, 584, 620, 662, 845, 1216
MalI	GATC	7 cut(s)	120, 422, 549, 579, 672, 717, 759
MboI	GATC	7 cut(s)	118, 420, 547, 577, 670, 715, 757
MboII	GAAGA	3 cut(s)	352, 824, 922
MflI	RGATCY	3 cut(s)	118, 420, 757
MhlI	GDGCHC	4 cut(s)	192, 612, 738, 1010
MlsI	TGGCCA	2 cut(s)	567, 603
MluCI	AATT	4 cut(s)	297, 366, 948, 1020
MluNI	TGGCCA	2 cut(s)	567, 603
MlyI	GAGTC	2 cut(s)	74, 441
MnlI	CCTC	7 cut(s)	325, 742, 860, 985, 1037, 1057, 1188
Mox20I	TGGCCA	2 cut(s)	567, 603
MscI	TGGCCA	2 cut(s)	567, 603
MseI	TTAA	2 cut(s)	516, 1140
Msp20I	TGGCCA	2 cut(s)	567, 603
MspI	CCGG	2 cut(s)	462, 1145
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	4 cut(s)	562, 568, 598, 604
NdeII	GATC	7 cut(s)	118, 420, 547, 577, 670, 715, 757
NlaIV	GGNNCC	1 cut(s)	422
NmuCI	GTSAC	5 cut(s)	542, 584, 620, 662, 845
NsbI	TGCGCA	1 cut(s)	980
PagI	TCATGA	3 cut(s)	204, 718, 1078
PinAI	ACCGGT	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	265, 289
PleI	GAGTC	2 cut(s)	73, 441
PpsI	GAGTC	2 cut(s)	73, 441
PspEI	GGTNACC	1 cut(s)	845
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	1095
PstNI	CAGNNNCTG	1 cut(s)	1157
PsuI	RGATCY	3 cut(s)	118, 420, 757
RsaI	GTAC	5 cut(s)	94, 382, 840, 896, 1167
RsaNI	GTAC	5 cut(s)	93, 381, 839, 895, 1166
SaqAI	TTAA	2 cut(s)	516, 1140
SatI	GCNGC	2 cut(s)	264, 288
Sau3AI	GATC	7 cut(s)	118, 420, 547, 577, 670, 715, 757
Sau96I	GGNCC	1 cut(s)	1095
SchI	GAGTC	2 cut(s)	74, 441
SduI	GDGCHC	4 cut(s)	192, 612, 738, 1010
SfaNI	GCATC	7 cut(s)	130, 167, 250, 329, 966, 1015, 1138
SmlI	CTYRAG	1 cut(s)	1037
SmoI	CTYRAG	1 cut(s)	1037
Sse9I	AATT	4 cut(s)	297, 366, 948, 1020
SsiI	CCGC	1 cut(s)	166
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	1014, 1169
StyI	CCWWGG	4 cut(s)	562, 568, 598, 604
TaaI	ACNGT	8 cut(s)	131, 153, 211, 315, 584, 620, 683, 1105
TaiI	ACGT	2 cut(s)	769, 819
TasI	AATT	4 cut(s)	297, 366, 948, 1020
TatI	WGTACW	2 cut(s)	92, 838
Tru1I	TTAA	2 cut(s)	516, 1140
Tru9I	TTAA	2 cut(s)	516, 1140
TscAI	CASTG	5 cut(s)	318, 688, 706, 777, 784
TseFI	GTSAC	5 cut(s)	542, 584, 620, 662, 845
TseI	GCWGC	2 cut(s)	263, 287
Tsp45I	GTSAC	5 cut(s)	542, 584, 620, 662, 845
TspDTI	ATGAA	5 cut(s)	193, 735, 824, 1067, 1095
TspRI	CASTG	5 cut(s)	318, 688, 706, 777, 784
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	2 cut(s)	1014, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.