Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

12807170 .. 12810169

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G134300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAACGTATGCTTTTGTTCTCTGATTAAGATGGAAGTGCAAAATTCTGGGCATGCGCATATAATTGAAGTATCTGGAGATGTGCCAGCTATAGAGACAAGCCTGGGTGTGAGAAAGATTTGTGGGGAAGGACCTTGTGGATTTTCAGATGCTAAAACCAGTTCCAAAGATGCACAGGAACGGTCGGCATCCATGCGGAAGCTTTTGATAGCAGTTATACTTTGTGTTATTTTCATGAGTGTGGAAGTTGTTGGGGGTATTAAATCCAACAGTCTTGCAATTCTGACTGATGCTGCTCATCTATTGTCAGATGTTGCAGCATTTGCAATATCTCTGTTTTCGCTTTGGGCATCAGGATGGGAGGCAACACCTCGTCAGTCTTATGGCTTCTTCAGGATTGAAATCTTAGGTGCTCTTGTTTCCATCCAGATGATTTGGCTTCTTGCTGGGATCCTTGTTTATGAAGCCATTAATAGACTTGTCAACAAGACTGGTGAAGTTAAGGGCTCTCTCATGTTTGTTGTTTCTGCATTTGGTTTAGTGGTTAACATTGCCATGGCACTCTTATTGGGTCATAATCATGGGCATGGGCATGGGCATGGACATGGACATGGTCATGGGCACGGTGATCATCATCACAGTAATGAGGATCATGATGGTACACATAGCCATGGGATTACTGTGACGACACACGCTCACCATCATGTGGTGCACTCCAATCATGATCACACGGAACCTCTGCTCAAGCCTGGCTGTGAAGGCGAAAAGAAACCAGAAGTTAAAAAGACGAAGCAACAAAATATCAACGTGCAGGGGGCTTATCTTCATGTACTTGGGGATTCCATTCAGAGTATCGGAGTGATGATTGGTGGAGGAATTATATGGTACAAGCCTGAGTGGAAGATTATTGATCTGATATGCACCCTTGTATTTTCATTGATTGTGCTGGCGACAACAATCAGGATGCTGCGAAATATTTTGGAGGTTCTGATGGAGAGCACTCCTAGAGAGATTGATGCCACAAAGCTTGAGAAGGGCCTCTGTGAGATGGATGAGGTAGTTGCCATTCACGAACTGCACATATGGGCCATAACTGTTGGCAAGGTGTTAATGGCTTGCCATGTTATCGTGAAGTCAGATGCTAATGCTGACATGGTACTTGAAAAGGTTATAGACTATATCAAGAGAGAATATAATATCAGTCATATAACCATTCAGATAGAGCGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

411

Amino Acids

44.91

Weight (kDa)

6.36

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	57
AccB7I	CCANNNNNTGG	1 cut(s)	706
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	3 cut(s)	445, 458, 657
AcsI	RAATTY	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	376
AfaI	GTAC	4 cut(s)	661, 831, 887, 1158
AfiI	CCNNNNNNNGG	1 cut(s)	706
AgsI	TTSAA	3 cut(s)	68, 401, 1163
AjnI	CCWGG	2 cut(s)	102, 748
AluBI	AGCT	3 cut(s)	89, 202, 1027
AluI	AGCT	3 cut(s)	89, 202, 1027
Alw21I	GWGCWC	3 cut(s)	415, 714, 1001
Alw26I	GTCTC	1 cut(s)	89
Alw44I	GTGCAC	1 cut(s)	710
AlwI	GGATC	3 cut(s)	445, 458, 657
AoxI	GGCC	2 cut(s)	1036, 1086
ApaLI	GTGCAC	1 cut(s)	710
ApeKI	GCWGC	3 cut(s)	293, 317, 967
ApoI	RAATTY	1 cut(s)	43
AseI	ATTAAT	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	3 cut(s)	131, 1036, 1086
AsuHPI	GGTGA	3 cut(s)	506, 638, 689
AvaII	GGWCC	1 cut(s)	131
BaeGI	GKGCMC	2 cut(s)	624, 714
BamHI	GGATCC	1 cut(s)	450
BanII	GRGCYC	1 cut(s)	509
Bbv12I	GWGCWC	3 cut(s)	415, 714, 1001
BbvI	GCAGC	3 cut(s)	280, 329, 954
BccI	CCATC	7 cut(s)	25, 351, 431, 650, 708, 985, 1042
BciT130I	CCWGG	2 cut(s)	104, 750
BclI	TGATCA	2 cut(s)	628, 724
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	1005
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	3 cut(s)	294, 318, 968
BlsI	GCNGC	3 cut(s)	295, 319, 969
Bme1390I	CCNGG	2 cut(s)	104, 750
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	3 cut(s)	131, 1036, 1086
BmiI	GGNNCC	2 cut(s)	452, 735
BmrFI	CCNGG	2 cut(s)	104, 750
BmsI	GCATC	8 cut(s)	139, 160, 197, 280, 359, 954, 1006, 1129
BpmI	CTGGAG	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	728, 1049
BsaBI	GATNNNNATC	2 cut(s)	401, 633
BsaJI	CCNNGG	3 cut(s)	103, 555, 670
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse1I	ACTGG	2 cut(s)	159, 496
Bse3DI	GCAATG	1 cut(s)	549
Bse8I	GATNNNNATC	2 cut(s)	401, 633
BseBI	CCWGG	2 cut(s)	104, 750
BseDI	CCNNGG	3 cut(s)	103, 555, 670
BseGI	GGATG	5 cut(s)	188, 362, 423, 969, 1057
BseJI	GATNNNNATC	2 cut(s)	401, 633
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	2 cut(s)	159, 496
BseSI	GKGCMC	2 cut(s)	624, 714
BseXI	GCAGC	3 cut(s)	280, 329, 954
BseYI	CCCAGC	1 cut(s)	446
BsgI	GTGCAG	2 cut(s)	830, 1061
Bsh1285I	CGRYCG	1 cut(s)	185
BshFI	GGCC	2 cut(s)	1038, 1088
BsiEI	CGRYCG	1 cut(s)	185
BsiHKAI	GWGCWC	3 cut(s)	415, 714, 1001
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	1038, 1088
Bsp1286I	GDGCHC	5 cut(s)	415, 509, 624, 714, 1001
Bsp143I	GATC	5 cut(s)	450, 628, 649, 724, 910
Bsp19I	CCATGG	2 cut(s)	555, 670
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	2 cut(s)	1038, 1088
BspCNI	CTCAG	1 cut(s)	886
BspHI	TCATGA	3 cut(s)	234, 652, 721
BspLI	GGNNCC	2 cut(s)	452, 735
BspPI	GGATC	3 cut(s)	445, 458, 657
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	159, 496
BssECI	CCNNGG	3 cut(s)	103, 555, 670
BssMI	GATC	5 cut(s)	450, 628, 649, 724, 910
BssT1I	CCWWGG	2 cut(s)	555, 670
Bst2UI	CCWGG	2 cut(s)	104, 750
Bst4CI	ACNGT	6 cut(s)	183, 272, 626, 641, 682, 1096
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	4 cut(s)	54, 87, 948, 1117
BstDEI	CTNAG	2 cut(s)	406, 894
BstDSI	CCRYGG	2 cut(s)	555, 670
BstF5I	GGATG	5 cut(s)	188, 362, 423, 969, 1057
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	5 cut(s)	453, 631, 652, 727, 913
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	5 cut(s)	450, 628, 649, 724, 910
BstMCI	CGRYCG	1 cut(s)	185
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 759
BstNI	CCWGG	2 cut(s)	104, 750
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	102, 748
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	2 cut(s)	624, 714
BstV1I	GCAGC	3 cut(s)	280, 329, 954
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	1038, 1088
BtgI	CCRYGG	2 cut(s)	555, 670
BtsCI	GGATG	5 cut(s)	188, 362, 423, 969, 1057
Cac8I	GCNNGC	4 cut(s)	54, 87, 948, 1117
CciI	TCATGA	3 cut(s)	234, 652, 721
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	131, 1036, 1086
CseI	GACGC	1 cut(s)	1214
Csp6I	GTAC	4 cut(s)	660, 830, 886, 1157
CspCI	CAANNNNNGTGG	2 cut(s)	1009, 1044
CviQI	GTAC	4 cut(s)	660, 830, 886, 1157
DdeI	CTNAG	2 cut(s)	406, 894
DpnI	GATC	5 cut(s)	452, 630, 651, 726, 912
DpnII	GATC	5 cut(s)	450, 628, 649, 724, 910
Eco130I	CCWWGG	2 cut(s)	555, 670
Eco24I	GRGCYC	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	376
EcoO109I	RGGNCCY	2 cut(s)	131, 1036
EcoRII	CCWGG	2 cut(s)	102, 748
EcoT14I	CCWWGG	2 cut(s)	555, 670
EcoT38I	GRGCYC	1 cut(s)	509
ErhI	CCWWGG	2 cut(s)	555, 670
FauNDI	CATATG	1 cut(s)	1082
FbaI	TGATCA	2 cut(s)	628, 724
Fnu4HI	GCNGC	3 cut(s)	294, 318, 968
FokI	GGATG	5 cut(s)	175, 369, 410, 976, 1064
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	3 cut(s)	294, 318, 968
FspAI	RTGCGCAY	1 cut(s)	57
FspBI	CTAG	1 cut(s)	1005
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	294, 318, 968
GsaI	CCCAGC	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	1038, 1088
HgaI	GACGC	1 cut(s)	1214
HhaI	GCGC	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	2 cut(s)	484, 547
HindII	GTYRAC	2 cut(s)	484, 547
HindIII	AAGCTT	2 cut(s)	200, 1025
HinfI	GANTC	1 cut(s)	839
HpaI	GTTAAC	1 cut(s)	547
HphI	GGTGA	3 cut(s)	506, 638, 689
Hpy166II	GTNNAC	4 cut(s)	484, 547, 662, 712
Hpy8I	GTNNAC	4 cut(s)	484, 547, 662, 712
HpyAV	CCTTC	3 cut(s)	122, 752, 1027
HpyCH4III	ACNGT	6 cut(s)	183, 272, 626, 641, 682, 1096
HpyCH4IV	ACGT	2 cut(s)	6, 807
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 759
HpyF3I	CTNAG	2 cut(s)	406, 894
HpySE526I	ACGT	2 cut(s)	6, 807
HspAI	GCGC	1 cut(s)	56
Ksp22I	TGATCA	2 cut(s)	628, 724
KspAI	GTTAAC	1 cut(s)	547
Kzo9I	GATC	5 cut(s)	450, 628, 649, 724, 910
Lsp1109I	GCAGC	3 cut(s)	280, 329, 954
LweI	GCATC	8 cut(s)	139, 160, 197, 280, 359, 954, 1006, 1129
MaeI	CTAG	1 cut(s)	1005
MaeII	ACGT	2 cut(s)	6, 807
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	5 cut(s)	452, 630, 651, 726, 912
MboI	GATC	5 cut(s)	450, 628, 649, 724, 910
MboII	GAAGA	3 cut(s)	382, 815, 913
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	5 cut(s)	415, 509, 624, 714, 1001
MluCI	AATT	4 cut(s)	43, 63, 279, 876
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	8 cut(s)	355, 381, 640, 747, 866, 976, 1048, 1049
MseI	TTAA	7 cut(s)	27, 261, 471, 501, 546, 780, 1109
MspR9I	CCNGG	2 cut(s)	104, 750
MvaI	CCWGG	2 cut(s)	104, 750
MwoI	GCNNNNNNNGC	2 cut(s)	323, 759
NcoI	CCATGG	2 cut(s)	555, 670
NdeI	CATATG	1 cut(s)	1082
NdeII	GATC	5 cut(s)	450, 628, 649, 724, 910
NlaIV	GGNNCC	2 cut(s)	452, 735
NmuCI	GTSAC	1 cut(s)	682
NsbI	TGCGCA	1 cut(s)	57
NspI	RCATGY	1 cut(s)	56
PaeI	GCATGC	1 cut(s)	56
PagI	TCATGA	3 cut(s)	234, 652, 721
PfeI	GAWTC	1 cut(s)	839
PflFI	GACNNNGTC	1 cut(s)	612
PflMI	CCANNNNNTGG	1 cut(s)	706
PkrI	GCNGC	3 cut(s)	295, 319, 969
PpuMI	RGGWCCY	1 cut(s)	131
PshBI	ATTAAT	1 cut(s)	471
Psp5II	RGGWCCY	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	102, 748
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	2 cut(s)	102, 748
PspN4I	GGNNCC	2 cut(s)	452, 735
PspPI	GGNCC	3 cut(s)	131, 1036, 1086
PspPPI	RGGWCCY	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	450
PsyI	GACNNNGTC	1 cut(s)	612
RsaI	GTAC	4 cut(s)	661, 831, 887, 1158
RsaNI	GTAC	4 cut(s)	660, 830, 886, 1157
SaqAI	TTAA	7 cut(s)	27, 261, 471, 501, 546, 780, 1109
SatI	GCNGC	3 cut(s)	294, 318, 968
Sau3AI	GATC	5 cut(s)	450, 628, 649, 724, 910
Sau96I	GGNCC	3 cut(s)	131, 1036, 1086
ScrFI	CCNGG	2 cut(s)	104, 750
SduI	GDGCHC	5 cut(s)	415, 509, 624, 714, 1001
SfaNI	GCATC	8 cut(s)	139, 160, 197, 280, 359, 954, 1006, 1129
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	743, 1028
SmoI	CTYRAG	2 cut(s)	743, 1028
SphI	GCATGC	1 cut(s)	56
Sse9I	AATT	4 cut(s)	43, 63, 279, 876
SsiI	CCGC	1 cut(s)	196
SspI	AATATT	1 cut(s)	976
SspMI	CTAG	1 cut(s)	1005
StyD4I	CCNGG	2 cut(s)	102, 748
StyI	CCWWGG	2 cut(s)	555, 670
TaaI	ACNGT	6 cut(s)	183, 272, 626, 641, 682, 1096
TaiI	ACGT	2 cut(s)	9, 810
TasI	AATT	4 cut(s)	43, 63, 279, 876
TatI	WGTACW	1 cut(s)	829
TfiI	GAWTC	1 cut(s)	839
Tru1I	TTAA	7 cut(s)	27, 261, 471, 501, 546, 780, 1109
Tru9I	TTAA	7 cut(s)	27, 261, 471, 501, 546, 780, 1109
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	3 cut(s)	293, 317, 967
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	5 cut(s)	17, 223, 477, 815, 924
TspGWI	ACGGA	1 cut(s)	746
Tth111I	GACNNNGTC	1 cut(s)	612
Van91I	CCANNNNNTGG	1 cut(s)	706
VneI	GTGCAC	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	131
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	1 cut(s)	43
XceI	RCATGY	1 cut(s)	56
XspI	CTAG	1 cut(s)	1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.