Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Reverse (-)

2292329 .. 2293364

Gene Structure 1036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1032200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGAACCACAAATTTCCGAACATGAGCGTGTAAGTGTGGATGTTCAGGCTATAGAAACGAGGTTGAGTGGGAGCTTGATTTGTCGGGATGGACCGTGCGGATTCTCAGATGCTAAAACTAGTTCCAAAGATGCACAGGAACGCTCGGCATCCCTGCGCAGGCTTATGATAGTGGTTGCACTATGTTTAGTTTTCATGAGCGTGGAAGTTGTTGGGGGTTTCAAAGCCAACAGTCTTGCCATTCTCGCCGATGCAGCTCATCAGCATTTGCAATTTCTTTCATGGCACTTATTGTGTCATGATCATGGACACGGACATGGTGATCATCACGATCATCATGAGGATCACAATGAGACACATAACCATGGGACTACTGTGACTACGCATCACTCTCATCATCATGAGGTGCACTGCAATCACGGTGACAAACACCATCATATAGTTGATGTCACGGTACCTCTACTCAAGCATAGCTCTGAAGGTGAAAAGAAACCGAAGCAACAAAACATCAATGTGCAGGGGGCTTATCTTCATGTACTCGGAGATTCCATTCAGATAATGATTTTCTCGACAACAATCCCGATGTTGAGGAACATTTTGGAGGTTCTGATGGAGAGCACTCCCAGAGAGATTGATGCCACGAAGATTGAGAAAGATCTCTGTGGGATGGATGAGGTAGTTGACATCCAAGAACTGCACATCTGGGCGATAACTGTTGGAAAGGTGCTAATGGCTTGCCATATTATCGTTAAGCCGGATGCTAATGCTGAAATGGTACTGAAAAAGGTTATAGACTACGTCAAGCGAGGGTATAATATCAGTCATGTAACGATTGAGATAGAGCATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

284

Amino Acids

31.77

Weight (kDa)

6.09

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZT_dimer	PF16916	208 - 282	3e-11	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	158
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	1 cut(s)	454
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	3 cut(s)	456, 537, 777
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	223
AhlI	ACTAGT	1 cut(s)	119
AluBI	AGCT	3 cut(s)	75, 257, 474
AluI	AGCT	3 cut(s)	75, 257, 474
Alw21I	GWGCWC	2 cut(s)	411, 620
Alw26I	GTCTC	1 cut(s)	347
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	351
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	12
Asp718I	GGTACC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	3 cut(s)	332, 434, 494
AvaII	GGWCC	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	411
BanI	GGYRCC	1 cut(s)	454
Bbv12I	GWGCWC	2 cut(s)	411, 620
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	4 cut(s)	83, 441, 604, 661
BclI	TGATCA	2 cut(s)	301, 322
BcoDI	GTCTC	1 cut(s)	347
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	51
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	2 cut(s)	6, 456
BmsI	GCATC	7 cut(s)	100, 121, 158, 241, 394, 625, 748
BpuEI	CTTGAG	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	7 cut(s)	46, 94, 149, 672, 676, 684, 763
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	266
BsgI	GTGCAG	2 cut(s)	536, 680
BshNI	GGYRCC	1 cut(s)	454
BsiHKAI	GWGCWC	2 cut(s)	411, 620
BsiSI	CCGG	1 cut(s)	755
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	411, 620
Bsp143I	GATC	5 cut(s)	301, 322, 331, 343, 655
Bsp19I	CCATGG	1 cut(s)	364
BspACI	CCGC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	119
BspHI	TCATGA	4 cut(s)	195, 298, 337, 400
BspLI	GGNNCC	2 cut(s)	6, 456
BspPI	GGATC	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	454
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	5 cut(s)	301, 322, 331, 343, 655
BssT1I	CCWWGG	1 cut(s)	364
Bst4CI	ACNGT	6 cut(s)	96, 233, 376, 422, 454, 715
BstC8I	GCNNGC	2 cut(s)	161, 736
BstDEI	CTNAG	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	7 cut(s)	46, 94, 149, 672, 676, 684, 763
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	5 cut(s)	304, 325, 334, 346, 658
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	5 cut(s)	301, 322, 331, 343, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 254
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	7 cut(s)	46, 94, 149, 672, 676, 684, 763
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	161, 736
CciI	TCATGA	4 cut(s)	195, 298, 337, 400
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	455, 536, 776
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviJI	RGCY	9 cut(s)	50, 75, 163, 227, 257, 474, 524, 734, 754
CviKI_1	RGCY	9 cut(s)	50, 75, 163, 227, 257, 474, 524, 734, 754
CviQI	GTAC	3 cut(s)	455, 536, 776
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	5 cut(s)	303, 324, 333, 345, 657
DpnII	GATC	5 cut(s)	301, 322, 331, 343, 655
Eco130I	CCWWGG	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	364
FaqI	GGGAC	1 cut(s)	382
FbaI	TGATCA	2 cut(s)	301, 322
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	7 cut(s)	53, 101, 136, 671, 679, 683, 770
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	120
FspI	TGCGCA	1 cut(s)	158
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	255
HapII	CCGG	1 cut(s)	755
HhaI	GCGC	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	2 cut(s)	102, 545
HpaII	CCGG	1 cut(s)	755
HphI	GGTGA	3 cut(s)	332, 434, 494
Hpy166II	GTNNAC	2 cut(s)	409, 682
Hpy188I	TCNGA	6 cut(s)	19, 109, 478, 542, 555, 609
Hpy188III	TCNNGA	8 cut(s)	86, 196, 299, 329, 338, 401, 568, 580
Hpy8I	GTNNAC	2 cut(s)	409, 682
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	6 cut(s)	96, 233, 376, 422, 454, 715
HpyCH4IV	ACGT	1 cut(s)	798
HpyCH4V	TGCA	8 cut(s)	134, 179, 254, 271, 409, 414, 517, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 254
HpyF3I	CTNAG	1 cut(s)	106
HpySE526I	ACGT	1 cut(s)	798
HspAI	GCGC	1 cut(s)	157
KpnI	GGTACC	1 cut(s)	458
Ksp22I	TGATCA	2 cut(s)	301, 322
Kzo9I	GATC	5 cut(s)	301, 322, 331, 343, 655
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	8 cut(s)	32, 122, 145, 167, 503, 637, 688, 768
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	7 cut(s)	100, 121, 158, 241, 394, 625, 748
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	4 cut(s)	376, 422, 448, 826
MalI	GATC	5 cut(s)	303, 324, 333, 345, 657
MboI	GATC	5 cut(s)	301, 322, 331, 343, 655
MboII	GAAGA	2 cut(s)	521, 655
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	2 cut(s)	411, 620
MluCI	AATT	2 cut(s)	12, 272
MmeI	TCCRAC	1 cut(s)	697
MnlI	CCTC	8 cut(s)	54, 334, 397, 468, 582, 595, 667, 800
MseI	TTAA	1 cut(s)	750
MslI	CAYNNNNRTG	7 cut(s)	27, 200, 303, 315, 363, 399, 512
MspI	CCGG	1 cut(s)	755
MwoI	GCNNNNNNNGC	2 cut(s)	245, 254
NcoI	CCATGG	1 cut(s)	364
NdeII	GATC	5 cut(s)	301, 322, 331, 343, 655
NlaIV	GGNNCC	2 cut(s)	6, 456
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	3 cut(s)	376, 422, 448
NsbI	TGCGCA	1 cut(s)	158
PagI	TCATGA	4 cut(s)	195, 298, 337, 400
PfeI	GAWTC	2 cut(s)	102, 545
PflFI	GACNNNGTC	1 cut(s)	797
PkrI	GCNGC	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	6, 456
PspPI	GGNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	655
PsyI	GACNNNGTC	1 cut(s)	797
RsaI	GTAC	3 cut(s)	456, 537, 777
RsaNI	GTAC	3 cut(s)	455, 536, 776
RseI	CAYNNNNRTG	7 cut(s)	27, 200, 303, 315, 363, 399, 512
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	5 cut(s)	301, 322, 331, 343, 655
Sau96I	GGNCC	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	411, 620
SfaNI	GCATC	7 cut(s)	100, 121, 158, 241, 394, 625, 748
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	7 cut(s)	27, 200, 303, 315, 363, 399, 512
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SpeI	ACTAGT	1 cut(s)	119
Sse9I	AATT	2 cut(s)	12, 272
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	6 cut(s)	96, 233, 376, 422, 454, 715
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	1 cut(s)	569
TasI	AATT	2 cut(s)	12, 272
TatI	WGTACW	1 cut(s)	535
TfiI	GAWTC	2 cut(s)	102, 545
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	1 cut(s)	416
TseFI	GTSAC	3 cut(s)	376, 422, 448
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	3 cut(s)	376, 422, 448
TspDTI	ATGAA	3 cut(s)	184, 270, 521
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	416
Tth111I	GACNNNGTC	1 cut(s)	797
VneI	GTGCAC	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	12
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.