Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

55936079 .. 55937017

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40041

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAATTAGGGAGTCATTCTCTGGAGACAAACAGTAGCAACATTACTTGCAGGGAAGGACCCTGTCAAGCGTTAACCTCCAAATATGGAGAGGCATCCAAGAGAAAGCTGATGATAGCACTCGTAGCCTCTGTCATTTTCATGACAGTGGATATTGTTGTAGGCATCAAAGCCAATAGTTTGGCAATTCGGTCCGATGCGCTACATGTCTTAGCAGATGTTGTGGCATTCGCAATTTCTGTGTTCTCAGTTTGGGCATCGGGATGGAAAGCAACTCCAGGCAAGACTTATGGCTTCTTAAGGATTGAAACCCTAGGTGCTTTCTTTTCAATCCTTATAATATGGCTCACTGCTGGTATTCTAATTTATGAAGCCATTGAGAGACTTAAGAATGGCAACCCTGGCGAAGTTAAAGGCTCTCTCATGTTTATTGTTTCCACCGTGGGTCTAGTGCTTAACATCGCCATGGCGGTCTTGTTGGGTCATGATCACAACCATGGCAACAGCCATGGTGATCATCATCAGAACGAGGATCATGATGATGATGATCATACAGATAACAATGGGACACATCACAATCGTCGCAATATGAACCTCCATGGGGCATATCTTCATGTACTTGGGGATATCATTCAGAGCATTGGAGTGATGGTCACCGCAGTGGTCATATGTGCTAAGCCTGAATGGAAGATCGCTGATCTCATATGCACACTAGTATTTTCAATAGCTGTGCTGGCTACAACCATCGGCATGCTGCGGAAAATTGTTGGGGTTCTTATGGAGAGCACTCCAAGAGGGATCGACACCTTAAAGCTTGAGAAAGCTTTGTGTGAGCTGGATGCAGTAGTTGCCTGTCATGAACTGCACATATGGTGCATAACTCCTGGGAAGAATTTACTAACTTGCCATCTAATTGTCAACCCAGAAGCTAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

312

Amino Acids

33.85

Weight (kDa)

6.16

Isoelectric Point (pI)

20.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	37 - 260	9.9e-41	Cation efflux transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AciI	CCGC	3 cut(s)	470, 657, 757
AclWI	GGATC	2 cut(s)	540, 806
AcsI	RAATTY	1 cut(s)	892
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	1 cut(s)	601
AflII	CTTAAG	2 cut(s)	298, 386
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	3 cut(s)	308, 330, 723
AhlI	ACTAGT	1 cut(s)	712
AjnI	CCWGG	3 cut(s)	277, 400, 883
AleI	CACNNNNGTG	1 cut(s)	659
AluBI	AGCT	6 cut(s)	109, 728, 814, 824, 835, 929
AluI	AGCT	6 cut(s)	109, 728, 814, 824, 835, 929
Alw21I	GWGCWC	1 cut(s)	788
Alw26I	GTCTC	2 cut(s)	20, 376
AlwI	GGATC	2 cut(s)	540, 806
ApeKI	GCWGC	1 cut(s)	754
ApoI	RAATTY	1 cut(s)	892
AspA2I	CCTAGG	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	59, 192
AsuHPI	GGTGA	2 cut(s)	524, 646
AvaII	GGWCC	2 cut(s)	59, 192
AvrII	CCTAGG	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	788
BbvI	GCAGC	1 cut(s)	741
BccI	CCATC	4 cut(s)	258, 643, 752, 915
BciT130I	CCWGG	3 cut(s)	279, 402, 885
BclI	TGATCA	3 cut(s)	487, 514, 547
BcoDI	GTCTC	2 cut(s)	20, 376
BcuI	ACTAGT	1 cut(s)	712
BfaI	CTAG	3 cut(s)	314, 449, 713
BfrI	CTTAAG	2 cut(s)	298, 386
BisI	GCNGC	1 cut(s)	755
BlnI	CCTAGG	1 cut(s)	313
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	1 cut(s)	756
Bme1390I	CCNGG	3 cut(s)	279, 402, 885
Bme18I	GGWCC	2 cut(s)	59, 192
BmgT120I	GGNCC	2 cut(s)	59, 192
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	3 cut(s)	279, 402, 885
BmsI	GCATC	5 cut(s)	104, 174, 187, 266, 829
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	2 cut(s)	44, 261
Bpu1102I	GCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	836
BsaBI	GATNNNNATC	2 cut(s)	519, 546
BsaJI	CCNNGG	8 cut(s)	313, 400, 441, 465, 496, 508, 598, 884
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	601
Bse8I	GATNNNNATC	2 cut(s)	519, 546
BseBI	CCWGG	3 cut(s)	279, 402, 885
BseDI	CCNNGG	8 cut(s)	313, 400, 441, 465, 496, 508, 598, 884
BseGI	GGATG	3 cut(s)	95, 269, 844
BseJI	GATNNNNATC	2 cut(s)	519, 546
BseLI	CCNNNNNNNGG	1 cut(s)	601
BseMII	CTCAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	741
BsgI	GTGCAG	1 cut(s)	848
BsiHKAI	GWGCWC	1 cut(s)	788
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	1 cut(s)	601
BsmAI	GTCTC	2 cut(s)	20, 376
BsmFI	GGGAC	1 cut(s)	580
BsmI	GAATGC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	788
Bsp143I	GATC	7 cut(s)	487, 514, 532, 547, 690, 697, 798
Bsp1720I	GCTNAGC	1 cut(s)	675
Bsp19I	CCATGG	4 cut(s)	465, 496, 508, 598
BspACI	CCGC	3 cut(s)	470, 657, 757
BspCNI	CTCAG	1 cut(s)	260
BspHI	TCATGA	4 cut(s)	141, 484, 535, 856
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	540, 806
BspTI	CTTAAG	2 cut(s)	298, 386
BssECI	CCNNGG	8 cut(s)	313, 400, 441, 465, 496, 508, 598, 884
BssMI	GATC	7 cut(s)	487, 514, 532, 547, 690, 697, 798
BssT1I	CCWWGG	5 cut(s)	313, 465, 496, 508, 598
Bst2UI	CCWGG	3 cut(s)	279, 402, 885
Bst4CI	ACNGT	3 cut(s)	35, 148, 442
BstAFI	CTTAAG	2 cut(s)	298, 386
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstC8I	GCNNGC	2 cut(s)	735, 752
BstDEI	CTNAG	3 cut(s)	211, 247, 675
BstDSI	CCRYGG	5 cut(s)	441, 465, 496, 508, 598
BstEII	GGTNACC	1 cut(s)	652
BstF5I	GGATG	3 cut(s)	95, 269, 844
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	7 cut(s)	490, 517, 535, 550, 693, 700, 801
BstMAI	GTCTC	2 cut(s)	20, 376
BstMBI	GATC	7 cut(s)	487, 514, 532, 547, 690, 697, 798
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 402, 734, 848
BstNI	CCWGG	3 cut(s)	279, 402, 885
BstNSI	RCATGY	2 cut(s)	209, 754
BstPI	GGTNACC	1 cut(s)	652
BstSCI	CCNGG	3 cut(s)	277, 400, 883
BstV1I	GCAGC	1 cut(s)	741
BstXI	CCANNNNNNTGG	1 cut(s)	181
BtgI	CCRYGG	5 cut(s)	441, 465, 496, 508, 598
BtgZI	GCGATG	1 cut(s)	445
BtsCI	GGATG	3 cut(s)	95, 269, 844
BtsI	GCAGTG	2 cut(s)	348, 666
BtsIMutI	CAGTG	3 cut(s)	153, 348, 666
Cac8I	GCNNGC	2 cut(s)	735, 752
CciI	TCATGA	4 cut(s)	141, 484, 535, 856
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	59, 192
CpoI	CGGWCCG	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	617
CspI	CGGWCCG	1 cut(s)	192
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	3 cut(s)	211, 247, 675
DpnI	GATC	7 cut(s)	489, 516, 534, 549, 692, 699, 800
DpnII	GATC	7 cut(s)	487, 514, 532, 547, 690, 697, 798
Eco130I	CCWWGG	5 cut(s)	313, 465, 496, 508, 598
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	2 cut(s)	59, 192
Eco91I	GGTNACC	1 cut(s)	652
EcoO109I	RGGNCCY	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	652
EcoRII	CCWGG	3 cut(s)	277, 400, 883
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	5 cut(s)	313, 465, 496, 508, 598
ErhI	CCWWGG	5 cut(s)	313, 465, 496, 508, 598
FaqI	GGGAC	1 cut(s)	580
FauNDI	CATATG	3 cut(s)	668, 704, 869
FbaI	TGATCA	3 cut(s)	487, 514, 547
Fnu4HI	GCNGC	1 cut(s)	755
FokI	GGATG	3 cut(s)	82, 276, 851
Fsp4HI	GCNGC	1 cut(s)	755
FspBI	CTAG	3 cut(s)	314, 449, 713
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	755
GsuI	CTGGAG	2 cut(s)	44, 261
HhaI	GCGC	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	2 cut(s)	75, 919
HindII	GTYRAC	2 cut(s)	75, 919
HindIII	AAGCTT	2 cut(s)	812, 822
HinfI	GANTC	1 cut(s)	13
HpaI	GTTAAC	1 cut(s)	75
HphI	GGTGA	2 cut(s)	524, 646
Hpy166II	GTNNAC	2 cut(s)	75, 919
Hpy188I	TCNGA	3 cut(s)	196, 525, 636
Hpy188III	TCNNGA	6 cut(s)	23, 142, 261, 485, 536, 857
Hpy8I	GTNNAC	2 cut(s)	75, 919
Hpy99I	CGWCG	1 cut(s)	585
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	3 cut(s)	35, 148, 442
HpyCH4V	TGCA	5 cut(s)	51, 708, 842, 865, 876
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 402, 734, 848
HpyF3I	CTNAG	3 cut(s)	211, 247, 675
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	3 cut(s)	487, 514, 547
KspAI	GTTAAC	1 cut(s)	75
Kzo9I	GATC	7 cut(s)	487, 514, 532, 547, 690, 697, 798
Lsp1109I	GCAGC	1 cut(s)	741
LweI	GCATC	5 cut(s)	104, 174, 187, 266, 829
MaeI	CTAG	3 cut(s)	314, 449, 713
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	7 cut(s)	489, 516, 534, 549, 692, 699, 800
MboI	GATC	7 cut(s)	487, 514, 532, 547, 690, 697, 798
MboII	GAAGA	3 cut(s)	602, 700, 901
MhlI	GDGCHC	1 cut(s)	788
MluCI	AATT	8 cut(s)	5, 186, 234, 363, 762, 892, 912, 931
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	6 cut(s)	85, 88, 139, 523, 605, 788
MseI	TTAA	7 cut(s)	74, 299, 387, 411, 456, 809, 937
MslI	CAYNNNNRTG	9 cut(s)	140, 146, 262, 464, 495, 540, 644, 659, 749
MspCI	CTTAAG	2 cut(s)	298, 386
MspR9I	CCNGG	3 cut(s)	279, 402, 885
Mva1269I	GAATGC	1 cut(s)	227
MvaI	CCWGG	3 cut(s)	279, 402, 885
MwoI	GCNNNNNNNGC	4 cut(s)	125, 402, 734, 848
NcoI	CCATGG	4 cut(s)	465, 496, 508, 598
NdeI	CATATG	3 cut(s)	668, 704, 869
NdeII	GATC	7 cut(s)	487, 514, 532, 547, 690, 697, 798
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	652
NspI	RCATGY	2 cut(s)	209, 754
OliI	CACNNNNGTG	1 cut(s)	659
PaeI	GCATGC	1 cut(s)	754
PagI	TCATGA	4 cut(s)	141, 484, 535, 856
PciI	ACATGT	1 cut(s)	205
PctI	GAATGC	1 cut(s)	227
PflFI	GACNNNGTC	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	756
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PpuMI	RGGWCCY	1 cut(s)	59
PscI	ACATGT	1 cut(s)	205
PsiI	TTATAA	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	3 cut(s)	277, 400, 883
PspEI	GGTNACC	1 cut(s)	652
PspGI	CCWGG	3 cut(s)	277, 400, 883
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	59, 192
PspPPI	RGGWCCY	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	63
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	9 cut(s)	140, 146, 262, 464, 495, 540, 644, 659, 749
Rsr2I	CGGWCCG	1 cut(s)	192
RsrII	CGGWCCG	1 cut(s)	192
SaqAI	TTAA	7 cut(s)	74, 299, 387, 411, 456, 809, 937
SatI	GCNGC	1 cut(s)	755
Sau3AI	GATC	7 cut(s)	487, 514, 532, 547, 690, 697, 798
Sau96I	GGNCC	2 cut(s)	59, 192
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	3 cut(s)	279, 402, 885
SduI	GDGCHC	1 cut(s)	788
SfaNI	GCATC	5 cut(s)	104, 174, 187, 266, 829
SinI	GGWCC	2 cut(s)	59, 192
SmiMI	CAYNNNNRTG	9 cut(s)	140, 146, 262, 464, 495, 540, 644, 659, 749
SmlI	CTYRAG	3 cut(s)	298, 386, 815
SmoI	CTYRAG	3 cut(s)	298, 386, 815
SpeI	ACTAGT	1 cut(s)	712
SphI	GCATGC	1 cut(s)	754
Sse9I	AATT	8 cut(s)	5, 186, 234, 363, 762, 892, 912, 931
SsiI	CCGC	3 cut(s)	470, 657, 757
SspMI	CTAG	3 cut(s)	314, 449, 713
StyD4I	CCNGG	3 cut(s)	277, 400, 883
StyI	CCWWGG	5 cut(s)	313, 465, 496, 508, 598
TaaI	ACNGT	3 cut(s)	35, 148, 442
TaqI	TCGA	1 cut(s)	801
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	8 cut(s)	5, 186, 234, 363, 762, 892, 912, 931
TatI	WGTACW	1 cut(s)	616
Tru1I	TTAA	7 cut(s)	74, 299, 387, 411, 456, 809, 937
Tru9I	TTAA	7 cut(s)	74, 299, 387, 411, 456, 809, 937
TscAI	CASTG	3 cut(s)	153, 355, 666
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	1 cut(s)	754
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	5 cut(s)	130, 384, 602, 605, 873
TspRI	CASTG	3 cut(s)	153, 355, 666
Tth111I	GACNNNGTC	1 cut(s)	63
Vha464I	CTTAAG	2 cut(s)	298, 386
VpaK11BI	GGWCC	2 cut(s)	59, 192
XapI	RAATTY	1 cut(s)	892
XceI	RCATGY	2 cut(s)	209, 754
XmaJI	CCTAGG	1 cut(s)	313
XspI	CTAG	3 cut(s)	314, 449, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.