Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

7061800 .. 7064532

Gene Structure 2733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G007690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAAGCGCAACATTCTGGACACGGGCATATATTTGAAGTGCATGGAGATGTGAAAGATATTGAGTCAAGATTGCGTGGTAGCAAGATTTGTACTGAAGCACCATGTGGATTTTCAGATCCTAATAACAGTTCCAAAGATGCTAAGGAACGGTCAGCATCAATGCGGAAGCTTTTGATAGCAGTTGTGCTCTGTGTCGTTTTCATGACTGTGGAAGTTGTTGGGGGTATCAAAGCCAATAGTCTTGCTATTATGACTGATGCAGCTCATCTATTGTCAGATGTTGCAGCATTTGCAATTTCCCTGTTCTCACTGTGGGCATCAGGATGGGAGGCAACTCCACGCCAGACTTATGGCTTCTTCAGAATTGAAATACTCGGTACACTTGTTTCCATCCAGATGATATGGCTTCTTACTGGGATCCTTGTCTACGAAGCCATTGACAGACTCATCTATCAGACCGGTGAAGTTCAGGGCTTTCTCATGTTTGTTGTTTCTGCGTTTGGTTTAGTGGTTAATATTGCTATGGCAGTCTTGTTGGGTCACGATCACGGCCACGGGCATGATCACGGTCACGGTCACGGTCATGGCCACGGCCACGACCATGACCACAGCCATAGTGACCACGATCATGGACACAGTGAACATCATCATAACACTGATAATCATCACGATCATGAACATGATGACGAGCACCATCATTCTGAGGGAGCAGATCTCACACGTCCACTGCTCACTGAAAATGCAAGAAAGAACAAGCAACGAAATATCAATGTGCAGGGGGCTTATCTTCATGTACTCGGTGACCTCATTCAAAGTATTGGAGTTATGATAGGTGGAGCAGTTATATGGTACAAGCCAGAATGGAAGATTATTGACTTGATATGCACCCTTGTATTCTCAGTAATTGTGCTGTGGACAACAATCAATATGATGCGCAACATTTTGGAGGTTCTGATGGAGAGCACTCCTAGAGAAATTGATGCCACAAAACTTGAGAGAGGTCTCTGTGAGATGGATGAGGTTGTGGCAGTTCATGAACTACATATTTGGGCCATTACTGTAGGGAAGGTGCTACTGGCTTGCCATGTCATTGTTAAGCCGGATGCAGATACTGACATGGTACTAGAGAAGGTGATAGACTATATCAAGAGGGAATATAACATCACTCATGTTACTATTCAGATAGAGCGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

399

Amino Acids

44.63

Weight (kDa)

5.85

Isoelectric Point (pI)

26.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	58 - 320	5.8e-42	Cation efflux transmembrane domain
Zip	PF02535	157 - 274	6.8e-07	ZIP Zinc transporter
ZT_dimer	PF16916	324 - 398	4.4e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	938
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	3 cut(s)	113, 415, 428
AcoI	YGGCCR	3 cut(s)	553, 589, 595
AcuI	CTGAAG	2 cut(s)	117, 346
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	5 cut(s)	94, 382, 798, 854, 1125
AflIII	ACRYGT	1 cut(s)	722
AgeI	ACCGGT	1 cut(s)	461
AgsI	TTSAA	3 cut(s)	38, 371, 815
AjiI	CACGTC	1 cut(s)	725
AluBI	AGCT	2 cut(s)	172, 266
AluI	AGCT	2 cut(s)	172, 266
Alw21I	GWGCWC	3 cut(s)	192, 696, 968
Alw26I	GTCTC	1 cut(s)	1010
AlwI	GGATC	3 cut(s)	113, 415, 428
AlwNI	CAGNNNCTG	1 cut(s)	1115
AoxI	GGCC	4 cut(s)	553, 589, 595, 1053
ApeKI	GCWGC	2 cut(s)	263, 287
AsiGI	ACCGGT	1 cut(s)	461
AspLEI	GCGC	2 cut(s)	10, 939
AspS9I	GGNCC	1 cut(s)	1053
AsuHPI	GGTGA	3 cut(s)	476, 815, 1147
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BalI	TGGCCA	1 cut(s)	591
BamHI	GGATCC	1 cut(s)	420
Bbv12I	GWGCWC	3 cut(s)	192, 696, 968
BbvI	GCAGC	2 cut(s)	275, 299
BccI	CCATC	5 cut(s)	321, 401, 705, 952, 1009
BceAI	ACGGC	2 cut(s)	568, 610
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	1010
BfaI	CTAG	2 cut(s)	972, 1127
BfmI	CTRYAG	1 cut(s)	1062
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	2 cut(s)	264, 288
BlsI	GCNGC	2 cut(s)	265, 289
BmgBI	CACGTC	1 cut(s)	725
BmgT120I	GGNCC	1 cut(s)	1053
BmiI	GGNNCC	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	7 cut(s)	130, 167, 250, 329, 924, 973, 1096
BmuI	ACTGGG	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	702, 734
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	1016
BsaBI	GATNNNNATC	1 cut(s)	666
BsaI	GGTCTC	1 cut(s)	1010
BsaJI	CCNNGG	2 cut(s)	556, 592
BsaWI	WCCGGW	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	421, 1083
Bse8I	GATNNNNATC	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	556, 592
BseGI	GGATG	4 cut(s)	332, 393, 1024, 1111
BseJI	GATNNNNATC	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	696, 915
BseNI	ACTGG	2 cut(s)	421, 1083
BseXI	GCAGC	2 cut(s)	275, 299
BsgI	GTGCAG	1 cut(s)	797
BshFI	GGCC	4 cut(s)	555, 591, 597, 1055
BshTI	ACCGGT	1 cut(s)	461
BsiHKAI	GWGCWC	3 cut(s)	192, 696, 968
BsiSI	CCGG	2 cut(s)	462, 1103
BsmAI	GTCTC	1 cut(s)	1010
BsnI	GGCC	4 cut(s)	555, 591, 597, 1055
Bso31I	GGTCTC	1 cut(s)	1010
Bsp1286I	GDGCHC	3 cut(s)	192, 696, 968
Bsp143I	GATC	7 cut(s)	118, 420, 547, 565, 628, 673, 715
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	4 cut(s)	555, 591, 597, 1055
BspCNI	CTCAG	2 cut(s)	697, 914
BspHI	TCATGA	3 cut(s)	204, 676, 1036
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	3 cut(s)	113, 415, 428
BspTNI	GGTCTC	1 cut(s)	1010
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	421, 1083
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	556, 592
BssMI	GATC	7 cut(s)	118, 420, 547, 565, 628, 673, 715
Bst4CI	ACNGT	9 cut(s)	131, 153, 211, 315, 572, 578, 584, 641, 1063
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	1084
BstDEI	CTNAG	3 cut(s)	144, 705, 901
BstDSI	CCRYGG	2 cut(s)	556, 592
BstEII	GGTNACC	1 cut(s)	803
BstF5I	GGATG	4 cut(s)	332, 393, 1024, 1111
BstHHI	GCGC	2 cut(s)	10, 939
BstKTI	GATC	7 cut(s)	121, 423, 550, 568, 631, 676, 718
BstMAI	GTCTC	1 cut(s)	1010
BstMBI	GATC	7 cut(s)	118, 420, 547, 565, 628, 673, 715
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstPI	GGTNACC	1 cut(s)	803
BstSFI	CTRYAG	1 cut(s)	1062
BstV1I	GCAGC	2 cut(s)	275, 299
BstX2I	RGATCY	3 cut(s)	118, 420, 715
BstXI	CCANNNNNNTGG	2 cut(s)	353, 632
BstYI	RGATCY	3 cut(s)	118, 420, 715
BsuRI	GGCC	4 cut(s)	555, 591, 597, 1055
BtgI	CCRYGG	2 cut(s)	556, 592
BtrI	CACGTC	1 cut(s)	725
BtsCI	GGATG	4 cut(s)	332, 393, 1024, 1111
BtsI	GCAGTG	1 cut(s)	728
BtsIMutI	CAGTG	5 cut(s)	311, 646, 657, 728, 735
Cac8I	GCNNGC	1 cut(s)	1084
CaiI	CAGNNNCTG	1 cut(s)	1115
CciI	TCATGA	3 cut(s)	204, 676, 1036
CfoI	GCGC	2 cut(s)	10, 939
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	1053
CseI	GACGC	1 cut(s)	1181
Csp6I	GTAC	5 cut(s)	93, 381, 797, 853, 1124
CspAI	ACCGGT	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	976, 1011
CviQI	GTAC	5 cut(s)	93, 381, 797, 853, 1124
DdeI	CTNAG	3 cut(s)	144, 705, 901
DpnI	GATC	7 cut(s)	120, 422, 549, 567, 630, 675, 717
DpnII	GATC	7 cut(s)	118, 420, 547, 565, 628, 673, 715
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	3 cut(s)	553, 589, 595
Eco31I	GGTCTC	1 cut(s)	1010
Eco57I	CTGAAG	2 cut(s)	117, 346
Eco91I	GGTNACC	1 cut(s)	803
EcoO65I	GGTNACC	1 cut(s)	803
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	264, 288
FokI	GGATG	4 cut(s)	339, 380, 1031, 1118
Fsp4HI	GCNGC	2 cut(s)	264, 288
FspBI	CTAG	2 cut(s)	972, 1127
FspI	TGCGCA	1 cut(s)	938
GlaI	GCGC	2 cut(s)	9, 938
GluI	GCNGC	2 cut(s)	264, 288
HaeIII	GGCC	4 cut(s)	555, 591, 597, 1055
HapII	CCGG	2 cut(s)	462, 1103
HgaI	GACGC	1 cut(s)	1181
HhaI	GCGC	2 cut(s)	10, 939
Hin6I	GCGC	2 cut(s)	8, 937
HinP1I	GCGC	2 cut(s)	8, 937
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	2 cut(s)	65, 447
HpaII	CCGG	2 cut(s)	462, 1103
HphI	GGTGA	3 cut(s)	476, 815, 1147
Hpy166II	GTNNAC	5 cut(s)	383, 430, 644, 728, 918
Hpy188I	TCNGA	7 cut(s)	118, 280, 365, 459, 706, 957, 1185
Hpy8I	GTNNAC	5 cut(s)	383, 430, 644, 728, 918
HpyAV	CCTTC	2 cut(s)	1063, 1126
HpyCH4III	ACNGT	9 cut(s)	131, 153, 211, 315, 572, 578, 584, 641, 1063
HpyCH4IV	ACGT	1 cut(s)	724
HpyCH4V	TGCA	8 cut(s)	43, 263, 287, 296, 746, 778, 888, 1109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	3 cut(s)	144, 705, 901
HpySE526I	ACGT	1 cut(s)	724
HspAI	GCGC	2 cut(s)	8, 937
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	7 cut(s)	118, 420, 547, 565, 628, 673, 715
LmnI	GCTCC	2 cut(s)	710, 839
Lsp1109I	GCAGC	2 cut(s)	275, 299
LweI	GCATC	7 cut(s)	130, 167, 250, 329, 924, 973, 1096
MaeI	CTAG	2 cut(s)	972, 1127
MaeII	ACGT	1 cut(s)	724
MaeIII	GTNAC	6 cut(s)	542, 572, 578, 620, 803, 1174
MalI	GATC	7 cut(s)	120, 422, 549, 567, 630, 675, 717
MboI	GATC	7 cut(s)	118, 420, 547, 565, 628, 673, 715
MboII	GAAGA	3 cut(s)	352, 782, 880
MflI	RGATCY	3 cut(s)	118, 420, 715
MhlI	GDGCHC	3 cut(s)	192, 696, 968
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	4 cut(s)	297, 366, 906, 978
MluNI	TGGCCA	1 cut(s)	591
MlyI	GAGTC	2 cut(s)	74, 441
MnlI	CCTC	7 cut(s)	325, 700, 818, 943, 995, 1015, 1146
Mox20I	TGGCCA	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	2 cut(s)	516, 1098
Msp20I	TGGCCA	1 cut(s)	591
MspI	CCGG	2 cut(s)	462, 1103
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	7 cut(s)	118, 420, 547, 565, 628, 673, 715
NlaIV	GGNNCC	1 cut(s)	422
NmuCI	GTSAC	5 cut(s)	542, 572, 578, 620, 803
NsbI	TGCGCA	1 cut(s)	938
PagI	TCATGA	3 cut(s)	204, 676, 1036
PinAI	ACCGGT	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	265, 289
PleI	GAGTC	2 cut(s)	73, 441
PpsI	GAGTC	2 cut(s)	73, 441
PspEI	GGTNACC	1 cut(s)	803
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	1053
PstNI	CAGNNNCTG	1 cut(s)	1115
PsuI	RGATCY	3 cut(s)	118, 420, 715
RsaI	GTAC	5 cut(s)	94, 382, 798, 854, 1125
RsaNI	GTAC	5 cut(s)	93, 381, 797, 853, 1124
SaqAI	TTAA	2 cut(s)	516, 1098
SatI	GCNGC	2 cut(s)	264, 288
Sau3AI	GATC	7 cut(s)	118, 420, 547, 565, 628, 673, 715
Sau96I	GGNCC	1 cut(s)	1053
SchI	GAGTC	2 cut(s)	74, 441
SduI	GDGCHC	3 cut(s)	192, 696, 968
SfaNI	GCATC	7 cut(s)	130, 167, 250, 329, 924, 973, 1096
SfcI	CTRYAG	1 cut(s)	1062
SmlI	CTYRAG	1 cut(s)	995
SmoI	CTYRAG	1 cut(s)	995
Sse9I	AATT	4 cut(s)	297, 366, 906, 978
SsiI	CCGC	1 cut(s)	166
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	972, 1127
TaaI	ACNGT	9 cut(s)	131, 153, 211, 315, 572, 578, 584, 641, 1063
TaiI	ACGT	1 cut(s)	727
TasI	AATT	4 cut(s)	297, 366, 906, 978
TatI	WGTACW	2 cut(s)	92, 796
Tru1I	TTAA	2 cut(s)	516, 1098
Tru9I	TTAA	2 cut(s)	516, 1098
TscAI	CASTG	5 cut(s)	318, 646, 664, 735, 742
TseFI	GTSAC	5 cut(s)	542, 572, 578, 620, 803
TseI	GCWGC	2 cut(s)	263, 287
Tsp45I	GTSAC	5 cut(s)	542, 572, 578, 620, 803
TspDTI	ATGAA	5 cut(s)	193, 693, 782, 1025, 1053
TspRI	CASTG	5 cut(s)	318, 646, 664, 735, 742
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	2 cut(s)	972, 1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.