Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Reverse (-)

11560936 .. 11561439

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006891

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAATTAGGGAGTCATTCTCTGGACACAAACAGTAGCAACATTACTTGCAGGGAAGGACCCTGCCAAGCATTAACCTCCAACTATGGAGAGGCATCCAAGAGAAAGCTGATGATAGCACTCGTAGCCTCTGTCATTTTCATGACAGTGGAAATTGTTGTAGGCATCAAAGCCAATAGTTTGGCAATTCGGTCCGGTGCGCTACATGTCTTAACAGATGTTGCGGCATTTGCGATTTCTCTGTTCTCAGTTTGGGCATCGGGATGGAAGGCAACTCCAGGCAAGACTTATGGCTTCTTAAGGATTGAAACCCTAGGTGCTCTCGTTTCAATCCTTATAACATGGCTCACTGCTGGTTTTCTAATTTATGAAGCCATTGAGAGACTTAAGAATGGCAACCCTGGCGAAATTAAGGGCTCTCTCATGTTTATTGTTTCCACCGTGGGTTTAGTGCTTAACATCGCCATGGCGGTCTTGTTGGGTCATGATCACAACCATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

168

Amino Acids

17.79

Weight (kDa)

7.84

Isoelectric Point (pI)

18.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	37 - 165	2.3e-25	Cation efflux transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AciI	CCGC	2 cut(s)	224, 470
AflII	CTTAAG	2 cut(s)	298, 386
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	308, 330
AjnI	CCWGG	2 cut(s)	277, 400
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	376
AspA2I	CCTAGG	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	59, 192
AvaII	GGWCC	2 cut(s)	59, 192
AvrII	CCTAGG	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	322
BccI	CCATC	1 cut(s)	258
BciT130I	CCWGG	2 cut(s)	279, 402
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	1 cut(s)	314
BfrI	CTTAAG	2 cut(s)	298, 386
BisI	GCNGC	1 cut(s)	225
BlnI	CCTAGG	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	279, 402
Bme18I	GGWCC	2 cut(s)	59, 192
BmgT120I	GGNCC	2 cut(s)	59, 192
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	279, 402
BmsI	GCATC	3 cut(s)	104, 174, 266
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	261
BsaJI	CCNNGG	5 cut(s)	313, 400, 441, 465, 496
BsaWI	WCCGGW	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	279, 402
BseDI	CCNNGG	5 cut(s)	313, 400, 441, 465, 496
BseGI	GGATG	2 cut(s)	95, 269
BseMII	CTCAG	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	376
Bsp1286I	GDGCHC	2 cut(s)	322, 419
Bsp143I	GATC	1 cut(s)	487
Bsp19I	CCATGG	2 cut(s)	465, 496
BspACI	CCGC	2 cut(s)	224, 470
BspCNI	CTCAG	1 cut(s)	260
BspHI	TCATGA	2 cut(s)	141, 484
BspLI	GGNNCC	1 cut(s)	61
BspTI	CTTAAG	2 cut(s)	298, 386
BssECI	CCNNGG	5 cut(s)	313, 400, 441, 465, 496
BssMI	GATC	1 cut(s)	487
BssT1I	CCWWGG	3 cut(s)	313, 465, 496
Bst2UI	CCWGG	2 cut(s)	279, 402
Bst4CI	ACNGT	3 cut(s)	35, 148, 442
BstAFI	CTTAAG	2 cut(s)	298, 386
BstDEI	CTNAG	1 cut(s)	247
BstDSI	CCRYGG	3 cut(s)	441, 465, 496
BstF5I	GGATG	2 cut(s)	95, 269
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 230, 402
BstNI	CCWGG	2 cut(s)	279, 402
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	2 cut(s)	277, 400
BstXI	CCANNNNNNTGG	1 cut(s)	181
BtgI	CCRYGG	3 cut(s)	441, 465, 496
BtgZI	GCGATG	1 cut(s)	445
BtsCI	GGATG	2 cut(s)	95, 269
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	153, 348
CciI	TCATGA	2 cut(s)	141, 484
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	59, 192
CpoI	CGGWCCG	1 cut(s)	192
CspI	CGGWCCG	1 cut(s)	192
CviAII	CATG	7 cut(s)	142, 206, 342, 424, 466, 485, 497
CviJI	RGCY	8 cut(s)	109, 128, 173, 294, 346, 374, 417, 501
CviKI_1	RGCY	8 cut(s)	109, 128, 173, 294, 346, 374, 417, 501
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Eco130I	CCWWGG	3 cut(s)	313, 465, 496
Eco24I	GRGCYC	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	59, 192
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	277, 400
EcoT14I	CCWWGG	3 cut(s)	313, 465, 496
EcoT38I	GRGCYC	1 cut(s)	419
ErhI	CCWWGG	3 cut(s)	313, 465, 496
FaeI	CATG	7 cut(s)	145, 209, 345, 427, 469, 488, 500
FatI	CATG	7 cut(s)	141, 205, 341, 423, 465, 484, 496
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	2 cut(s)	82, 276
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	261
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	7 cut(s)	145, 209, 345, 427, 469, 488, 500
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	195
Hpy188III	TCNNGA	4 cut(s)	23, 142, 261, 485
HpyAV	CCTTC	2 cut(s)	50, 262
HpyCH4III	ACNGT	3 cut(s)	35, 148, 442
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 230, 402
HpyF3I	CTNAG	1 cut(s)	247
Hsp92II	CATG	7 cut(s)	145, 209, 345, 427, 469, 488, 500
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	1 cut(s)	487
LpnPI	CCDG	9 cut(s)	8, 37, 76, 208, 264, 291, 339, 387, 414
LweI	GCATC	3 cut(s)	104, 174, 266
MaeI	CTAG	1 cut(s)	314
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MhlI	GDGCHC	2 cut(s)	322, 419
MluCI	AATT	5 cut(s)	5, 153, 186, 363, 408
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	3 cut(s)	85, 88, 139
MseI	TTAA	6 cut(s)	74, 212, 299, 387, 411, 456
MslI	CAYNNNNRTG	5 cut(s)	140, 146, 262, 464, 495
MspCI	CTTAAG	2 cut(s)	298, 386
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	279, 402
MvaI	CCWGG	2 cut(s)	279, 402
MwoI	GCNNNNNNNGC	3 cut(s)	125, 230, 402
NcoI	CCATGG	2 cut(s)	465, 496
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	7 cut(s)	145, 209, 345, 427, 469, 488, 500
NlaIV	GGNNCC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	209
PagI	TCATGA	2 cut(s)	141, 484
PciI	ACATGT	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PpuMI	RGGWCCY	1 cut(s)	59
PscI	ACATGT	1 cut(s)	205
PsiI	TTATAA	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	2 cut(s)	277, 400
PspGI	CCWGG	2 cut(s)	277, 400
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	59, 192
PspPPI	RGGWCCY	1 cut(s)	59
RseI	CAYNNNNRTG	5 cut(s)	140, 146, 262, 464, 495
Rsr2I	CGGWCCG	1 cut(s)	192
RsrII	CGGWCCG	1 cut(s)	192
SaqAI	TTAA	6 cut(s)	74, 212, 299, 387, 411, 456
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	2 cut(s)	59, 192
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	2 cut(s)	279, 402
SduI	GDGCHC	2 cut(s)	322, 419
SetI	ASST	3 cut(s)	80, 111, 319
SfaNI	GCATC	3 cut(s)	104, 174, 266
SinI	GGWCC	2 cut(s)	59, 192
SmiMI	CAYNNNNRTG	5 cut(s)	140, 146, 262, 464, 495
SmlI	CTYRAG	2 cut(s)	298, 386
SmoI	CTYRAG	2 cut(s)	298, 386
Sse9I	AATT	5 cut(s)	5, 153, 186, 363, 408
SsiI	CCGC	2 cut(s)	224, 470
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	277, 400
StyI	CCWWGG	3 cut(s)	313, 465, 496
TaaI	ACNGT	3 cut(s)	35, 148, 442
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	5 cut(s)	5, 153, 186, 363, 408
TauI	GCSGC	1 cut(s)	227
Tru1I	TTAA	6 cut(s)	74, 212, 299, 387, 411, 456
Tru9I	TTAA	6 cut(s)	74, 212, 299, 387, 411, 456
TscAI	CASTG	2 cut(s)	153, 355
TspDTI	ATGAA	2 cut(s)	130, 384
TspRI	CASTG	2 cut(s)	153, 355
Vha464I	CTTAAG	2 cut(s)	298, 386
VpaK11BI	GGWCC	2 cut(s)	59, 192
XceI	RCATGY	1 cut(s)	209
XmaJI	CCTAGG	1 cut(s)	313
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.