Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00098

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Reverse (-)

45344 .. 46367

Gene Structure 1024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAATTAGGGAGTCATTCTCTGGAGACAAACAGTAGCAACATTACTTGCAGGGAAGGACCCTGTCAAGCGTTAACCTCCAAATATGGAGAGGCATCCAAGAGAAAGCTGATGATAGCACTCGTAGCCTCTGTCATTTTCATGACAGTGGAAATTGTTGTAGGCATCAAAGCCAATAGTTTGGCAATTCGGTCCGATGCGCTACATGTCTTAACAGATTTTCGGCATCAGGATGGAAGGCAACTCTATGGCTTCTTAAGGATTGAAATCCTAGGTGCTCTCGTTTCAATCCTTATAATATGGCTCACTGCTGGTATTCTAATTTATGAAGCCATTGAGAGACTTCAGAATGGCAACCCTGGCGAAGTTAAGGGCTCTCTCATGTTTATTGTTTCCACCGTGGGTCTAGTGCTTAACATCGCCATGGCGGTCTTGTTGGGTCATGATCACAACCATGGCAACAACCATGGTGATCATCATCATAACGAGGATCATGATGATGATGATCATACAGATAACAATGGGACACATCACAATCGTCGCAATATGAACCTCCATGGGGCATATCTTCATGTACTTGGGGATATCATTCAGAGCATTGGAATGATGGTCACCGCAGAGGTCATATGGGCTAAGCCTGAATGGAAGATCGCTGATCTCATATGCACACTAATATTTTCAATAGCTGTGCTGGCTACAACCATCGGCATGCTGCGGAAAATTGTTGGGGTTCTTATGGAGAGCACTCCAAGAGGGATCGACACCTTAAAGCTTGAGAAAGCTTTGTGTGAGCTGGATGCAGTAGTTGCCTGTCATGAACTGCACATATGGTGCATAACTCCTGGGAAGAATTTACTAACTTGCCATCTAATTGTCAACCCAGAAGCTAATTCTTATAGGGTGTTAGAAAATGCTATAAATTATATCAAAACAGAGTACAATATAACTCATGTAACAATTCAAATTGAGCCTCAGCAGCTAGCATCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

330

Amino Acids

36.54

Weight (kDa)

5.95

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	37 - 246	9.1e-28	Cation efflux transmembrane domain
ZT_dimer	PF16916	251 - 324	6.6e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
AciI	CCGC	3 cut(s)	428, 615, 715
AclWI	GGATC	2 cut(s)	498, 764
AcsI	RAATTY	1 cut(s)	850
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	576, 938
AfiI	CCNNNNNNNGG	1 cut(s)	559
AflII	CTTAAG	1 cut(s)	256
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	4 cut(s)	266, 288, 681, 962
AjnI	CCWGG	2 cut(s)	358, 841
AluBI	AGCT	7 cut(s)	109, 686, 772, 782, 793, 887, 979
AluI	AGCT	7 cut(s)	109, 686, 772, 782, 793, 887, 979
Alw21I	GWGCWC	2 cut(s)	280, 746
Alw26I	GTCTC	2 cut(s)	20, 334
AlwI	GGATC	2 cut(s)	498, 764
ApeKI	GCWGC	2 cut(s)	712, 976
ApoI	RAATTY	1 cut(s)	850
AspA2I	CCTAGG	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	59, 192
AsuHPI	GGTGA	2 cut(s)	482, 604
AsuNHI	GCTAGC	1 cut(s)	979
AvaII	GGWCC	2 cut(s)	59, 192
AvrII	CCTAGG	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	377
Bbv12I	GWGCWC	2 cut(s)	280, 746
BbvCI	CCTCAGC	1 cut(s)	972
BbvI	GCAGC	2 cut(s)	699, 988
BccI	CCATC	4 cut(s)	227, 601, 710, 873
BciT130I	CCWGG	2 cut(s)	360, 843
BclI	TGATCA	3 cut(s)	445, 472, 505
BcoDI	GTCTC	2 cut(s)	20, 334
BfaI	CTAG	3 cut(s)	272, 407, 980
BfrI	CTTAAG	1 cut(s)	256
BisI	GCNGC	2 cut(s)	713, 977
BlnI	CCTAGG	1 cut(s)	271
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	2 cut(s)	714, 978
Bme1390I	CCNGG	2 cut(s)	360, 843
Bme18I	GGWCC	2 cut(s)	59, 192
BmgT120I	GGNCC	2 cut(s)	59, 192
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	360, 843
BmsI	GCATC	5 cut(s)	104, 174, 187, 235, 787
BmtI	GCTAGC	1 cut(s)	983
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	972
Bpu1102I	GCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	794
BsaBI	GATNNNNATC	3 cut(s)	266, 477, 504
BsaJI	CCNNGG	8 cut(s)	271, 358, 399, 423, 454, 466, 556, 842
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse8I	GATNNNNATC	3 cut(s)	266, 477, 504
BseBI	CCWGG	2 cut(s)	360, 843
BseDI	CCNNGG	8 cut(s)	271, 358, 399, 423, 454, 466, 556, 842
BseGI	GGATG	3 cut(s)	95, 238, 802
BseJI	GATNNNNATC	3 cut(s)	266, 477, 504
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	1 cut(s)	986
BseXI	GCAGC	2 cut(s)	699, 988
BsgI	GTGCAG	1 cut(s)	806
BsiHKAI	GWGCWC	2 cut(s)	280, 746
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	2 cut(s)	20, 334
BsmFI	GGGAC	1 cut(s)	538
Bsp1286I	GDGCHC	3 cut(s)	280, 377, 746
Bsp143I	GATC	7 cut(s)	445, 472, 490, 505, 648, 655, 756
Bsp1720I	GCTNAGC	1 cut(s)	633
Bsp19I	CCATGG	4 cut(s)	423, 454, 466, 556
BspACI	CCGC	3 cut(s)	428, 615, 715
BspCNI	CTCAG	1 cut(s)	985
BspHI	TCATGA	4 cut(s)	141, 442, 493, 814
BspLI	GGNNCC	1 cut(s)	61
BspOI	GCTAGC	1 cut(s)	983
BspPI	GGATC	2 cut(s)	498, 764
BspTI	CTTAAG	1 cut(s)	256
BssECI	CCNNGG	8 cut(s)	271, 358, 399, 423, 454, 466, 556, 842
BssMI	GATC	7 cut(s)	445, 472, 490, 505, 648, 655, 756
BssT1I	CCWWGG	5 cut(s)	271, 423, 454, 466, 556
Bst2UI	CCWGG	2 cut(s)	360, 843
Bst4CI	ACNGT	3 cut(s)	35, 148, 400
BstAFI	CTTAAG	1 cut(s)	256
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstC8I	GCNNGC	3 cut(s)	693, 710, 981
BstDEI	CTNAG	2 cut(s)	633, 972
BstDSI	CCRYGG	5 cut(s)	399, 423, 454, 466, 556
BstEII	GGTNACC	1 cut(s)	610
BstF5I	GGATG	3 cut(s)	95, 238, 802
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	7 cut(s)	448, 475, 493, 508, 651, 658, 759
BstMAI	GTCTC	2 cut(s)	20, 334
BstMBI	GATC	7 cut(s)	445, 472, 490, 505, 648, 655, 756
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 360, 692, 806, 976
BstNI	CCWGG	2 cut(s)	360, 843
BstNSI	RCATGY	2 cut(s)	209, 712
BstPI	GGTNACC	1 cut(s)	610
BstSCI	CCNGG	2 cut(s)	358, 841
BstV1I	GCAGC	2 cut(s)	699, 988
BstXI	CCANNNNNNTGG	1 cut(s)	181
BtgI	CCRYGG	5 cut(s)	399, 423, 454, 466, 556
BtgZI	GCGATG	1 cut(s)	403
BtsCI	GGATG	3 cut(s)	95, 238, 802
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	153, 306
Cac8I	GCNNGC	3 cut(s)	693, 710, 981
CciI	TCATGA	4 cut(s)	141, 442, 493, 814
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	59, 192
CpoI	CGGWCCG	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	575, 937
CspI	CGGWCCG	1 cut(s)	192
CviQI	GTAC	2 cut(s)	575, 937
DdeI	CTNAG	2 cut(s)	633, 972
DpnI	GATC	7 cut(s)	447, 474, 492, 507, 650, 657, 758
DpnII	GATC	7 cut(s)	445, 472, 490, 505, 648, 655, 756
Eco130I	CCWWGG	5 cut(s)	271, 423, 454, 466, 556
Eco24I	GRGCYC	1 cut(s)	377
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	2 cut(s)	59, 192
Eco57I	CTGAAG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	610
EcoO109I	RGGNCCY	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	358, 841
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	5 cut(s)	271, 423, 454, 466, 556
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	5 cut(s)	271, 423, 454, 466, 556
FaqI	GGGAC	1 cut(s)	538
FauNDI	CATATG	3 cut(s)	626, 662, 827
FbaI	TGATCA	3 cut(s)	445, 472, 505
Fnu4HI	GCNGC	2 cut(s)	713, 977
FokI	GGATG	3 cut(s)	82, 245, 809
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	2 cut(s)	713, 977
FspBI	CTAG	3 cut(s)	272, 407, 980
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	2 cut(s)	713, 977
GsuI	CTGGAG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	2 cut(s)	75, 877
HindII	GTYRAC	2 cut(s)	75, 877
HindIII	AAGCTT	2 cut(s)	770, 780
HinfI	GANTC	1 cut(s)	13
HpaI	GTTAAC	1 cut(s)	75
HphI	GGTGA	2 cut(s)	482, 604
Hpy166II	GTNNAC	2 cut(s)	75, 877
Hpy188I	TCNGA	3 cut(s)	196, 348, 594
Hpy188III	TCNNGA	6 cut(s)	23, 142, 230, 443, 494, 815
Hpy8I	GTNNAC	2 cut(s)	75, 877
Hpy99I	CGWCG	1 cut(s)	543
HpyAV	CCTTC	2 cut(s)	50, 231
HpyCH4III	ACNGT	3 cut(s)	35, 148, 400
HpyCH4V	TGCA	5 cut(s)	51, 666, 800, 823, 834
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 360, 692, 806, 976
HpyF3I	CTNAG	2 cut(s)	633, 972
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	3 cut(s)	445, 472, 505
KspAI	GTTAAC	1 cut(s)	75
Kzo9I	GATC	7 cut(s)	445, 472, 490, 505, 648, 655, 756
Lsp1109I	GCAGC	2 cut(s)	699, 988
LweI	GCATC	5 cut(s)	104, 174, 187, 235, 787
MaeI	CTAG	3 cut(s)	272, 407, 980
MaeIII	GTNAC	2 cut(s)	610, 952
MalI	GATC	7 cut(s)	447, 474, 492, 507, 650, 657, 758
MboI	GATC	7 cut(s)	445, 472, 490, 505, 648, 655, 756
MboII	GAAGA	3 cut(s)	560, 658, 859
MhlI	GDGCHC	3 cut(s)	280, 377, 746
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	8 cut(s)	85, 88, 139, 481, 563, 613, 746, 981
MseI	TTAA	6 cut(s)	74, 212, 257, 369, 414, 767
MslI	CAYNNNNRTG	8 cut(s)	140, 146, 231, 422, 453, 498, 602, 707
MspCI	CTTAAG	1 cut(s)	256
MspR9I	CCNGG	2 cut(s)	360, 843
MvaI	CCWGG	2 cut(s)	360, 843
MwoI	GCNNNNNNNGC	5 cut(s)	125, 360, 692, 806, 976
NcoI	CCATGG	4 cut(s)	423, 454, 466, 556
NdeI	CATATG	3 cut(s)	626, 662, 827
NdeII	GATC	7 cut(s)	445, 472, 490, 505, 648, 655, 756
NheI	GCTAGC	1 cut(s)	979
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	2 cut(s)	209, 712
PaeI	GCATGC	1 cut(s)	712
PagI	TCATGA	4 cut(s)	141, 442, 493, 814
PciI	ACATGT	1 cut(s)	205
PflFI	GACNNNGTC	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	714, 978
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PpuMI	RGGWCCY	1 cut(s)	59
PscI	ACATGT	1 cut(s)	205
PsiI	TTATAA	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	2 cut(s)	358, 841
PspEI	GGTNACC	1 cut(s)	610
PspGI	CCWGG	2 cut(s)	358, 841
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	59, 192
PspPPI	RGGWCCY	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	63
RsaI	GTAC	2 cut(s)	576, 938
RsaNI	GTAC	2 cut(s)	575, 937
RseI	CAYNNNNRTG	8 cut(s)	140, 146, 231, 422, 453, 498, 602, 707
Rsr2I	CGGWCCG	1 cut(s)	192
RsrII	CGGWCCG	1 cut(s)	192
SaqAI	TTAA	6 cut(s)	74, 212, 257, 369, 414, 767
SatI	GCNGC	2 cut(s)	713, 977
Sau3AI	GATC	7 cut(s)	445, 472, 490, 505, 648, 655, 756
Sau96I	GGNCC	2 cut(s)	59, 192
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	2 cut(s)	360, 843
SduI	GDGCHC	3 cut(s)	280, 377, 746
SfaNI	GCATC	5 cut(s)	104, 174, 187, 235, 787
SinI	GGWCC	2 cut(s)	59, 192
SmiMI	CAYNNNNRTG	8 cut(s)	140, 146, 231, 422, 453, 498, 602, 707
SmlI	CTYRAG	2 cut(s)	256, 773
SmoI	CTYRAG	2 cut(s)	256, 773
SphI	GCATGC	1 cut(s)	712
SsiI	CCGC	3 cut(s)	428, 615, 715
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	3 cut(s)	272, 407, 980
StyD4I	CCNGG	2 cut(s)	358, 841
StyI	CCWWGG	5 cut(s)	271, 423, 454, 466, 556
TaaI	ACNGT	3 cut(s)	35, 148, 400
TaqI	TCGA	1 cut(s)	759
TaqII	GACCGA	1 cut(s)	180
TatI	WGTACW	2 cut(s)	574, 936
Tru1I	TTAA	6 cut(s)	74, 212, 257, 369, 414, 767
Tru9I	TTAA	6 cut(s)	74, 212, 257, 369, 414, 767
TscAI	CASTG	2 cut(s)	153, 313
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	2 cut(s)	712, 976
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	5 cut(s)	130, 342, 560, 563, 831
TspRI	CASTG	2 cut(s)	153, 313
Tth111I	GACNNNGTC	1 cut(s)	63
Vha464I	CTTAAG	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	59, 192
XapI	RAATTY	1 cut(s)	850
XceI	RCATGY	2 cut(s)	209, 712
XmaJI	CCTAGG	1 cut(s)	271
XspI	CTAG	3 cut(s)	272, 407, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.