Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

48381131 .. 48382171

Gene Structure 1041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG316500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGTTGAAGATCGGGAACGAGATCCGGAGACAAACAGGGTGGTGTCACATAGTTGTGGGGAAGGACGATGTCAAGCGTTAACTTCCAACTATGGAGAGGCATCCAAGAGAAACCTGATGACAGCACTCGTAGCCTCAGTCATTTTCATGACAGTGGAAATTGTTGTAGGCATCAAAGCCAATAGTTTGGCAATTCGGTCCGATGCGCTACATGTCTTAACAGATGTTGTGGCATTTGCAATTTCTGTGTTCTCAGTTTGGGCATCGGGGTGGAAGGCAACTCCAGGCAAGACTTATGGCTTCTTAAGGATTGAAACCCTAGGTGCTCTCGTTTCAATCCTTATAATATGGCTCACTGCTGGTATTCTAATTTATGAAGCCATTGAGAGACTTAAGAATGGCAACCCTGGCGAAGTTAAGGGCTCTCTCATGTTTATTGTTTCCACCGTGGGTTTAGTGCTTAACATCGCCATGGCGGTCTTGTTGGGTCATGATCACAACCATGGCAACAGCCATGGTGATCATCATCATAACGAGGATCATGATGATGATGATCATACAGATAACAATGGGACACATCACAATCGTCGCAATATGAACCTCCATGGGGCATATCTTCATGTACTTGGGGATATCATTCAGAGCATTGGAGTGATGGTCACCGCAGTGGTCATATGGGCTAAGCCTGAATGGAAGATCGCTGATCTCATATGCACACTAGTATTTTCAATAGTTGTGCTGGCTACAACCATCGGCATGCTGCGGAAAATTGTTGGGGTTCTTATGGAGAGCACTCCAAGAGGGATCGACACCTTAAAGCTTGAGAAAGCTTTGTGTGAGCTGGATGCAGTAGTTGCCTGTCATGAACTGCACATATGGTGCATAACTCCTGGGAAGAATTTACTAACTTGCCATCTAATTGTCAACCAAGAAGCTAATTCTTATAGGGTGTTAGAAAATGCTATAAATTATATCAAAACAGAGTACAATATAACTCATGTAACAATTCAAATTGAGCCTCAGCAGCTAGCATCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

346

Amino Acids

38.1

Weight (kDa)

5.99

Isoelectric Point (pI)

25.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	40 - 262	7.8e-42	Cation efflux transmembrane domain
ZT_dimer	PF16916	267 - 340	1.3e-12	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	3 cut(s)	476, 663, 763
AclWI	GGATC	3 cut(s)	17, 546, 812
AcsI	RAATTY	1 cut(s)	898
AfaI	GTAC	2 cut(s)	624, 986
AfiI	CCNNNNNNNGG	1 cut(s)	607
AflII	CTTAAG	2 cut(s)	304, 392
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	5 cut(s)	8, 314, 336, 729, 1010
AhlI	ACTAGT	1 cut(s)	718
AjnI	CCWGG	3 cut(s)	283, 406, 889
AleI	CACNNNNGTG	1 cut(s)	665
AluBI	AGCT	5 cut(s)	820, 830, 841, 935, 1027
AluI	AGCT	5 cut(s)	820, 830, 841, 935, 1027
Alw21I	GWGCWC	2 cut(s)	328, 794
Alw26I	GTCTC	2 cut(s)	23, 382
AlwI	GGATC	3 cut(s)	17, 546, 812
Aor13HI	TCCGGA	1 cut(s)	25
ApeKI	GCWGC	2 cut(s)	760, 1024
ApoI	RAATTY	1 cut(s)	898
AspA2I	CCTAGG	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	530, 652
AsuNHI	GCTAGC	1 cut(s)	1027
AvaII	GGWCC	1 cut(s)	198
AvrII	CCTAGG	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	425
Bbv12I	GWGCWC	2 cut(s)	328, 794
BbvCI	CCTCAGC	1 cut(s)	1020
BbvI	GCAGC	2 cut(s)	747, 1036
BccI	CCATC	3 cut(s)	649, 758, 921
BciT130I	CCWGG	3 cut(s)	285, 408, 891
BclI	TGATCA	3 cut(s)	493, 520, 553
BcoDI	GTCTC	2 cut(s)	23, 382
BcuI	ACTAGT	1 cut(s)	718
BfaI	CTAG	3 cut(s)	320, 719, 1028
BfrI	CTTAAG	2 cut(s)	304, 392
BisI	GCNGC	2 cut(s)	761, 1025
BlnI	CCTAGG	1 cut(s)	319
BlpI	GCTNAGC	1 cut(s)	681
BlsI	GCNGC	2 cut(s)	762, 1026
Bme1390I	CCNGG	3 cut(s)	285, 408, 891
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	198
BmrFI	CCNGG	3 cut(s)	285, 408, 891
BmsI	GCATC	5 cut(s)	110, 180, 193, 272, 835
BmtI	GCTAGC	1 cut(s)	1031
BpmI	CTGGAG	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	1020
Bpu1102I	GCTNAGC	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	842
BsaBI	GATNNNNATC	2 cut(s)	525, 552
BsaJI	CCNNGG	8 cut(s)	319, 406, 447, 471, 502, 514, 604, 890
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse8I	GATNNNNATC	2 cut(s)	525, 552
BseAI	TCCGGA	1 cut(s)	25
BseBI	CCWGG	3 cut(s)	285, 408, 891
BseDI	CCNNGG	8 cut(s)	319, 406, 447, 471, 502, 514, 604, 890
BseGI	GGATG	2 cut(s)	101, 850
BseJI	GATNNNNATC	2 cut(s)	525, 552
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	3 cut(s)	150, 267, 1034
BseXI	GCAGC	2 cut(s)	747, 1036
BsgI	GTGCAG	1 cut(s)	854
BsiHKAI	GWGCWC	2 cut(s)	328, 794
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	2 cut(s)	23, 382
BsmFI	GGGAC	1 cut(s)	586
Bsp1286I	GDGCHC	3 cut(s)	328, 425, 794
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	9 cut(s)	10, 22, 493, 520, 538, 553, 696, 703, 804
Bsp1720I	GCTNAGC	1 cut(s)	681
Bsp19I	CCATGG	4 cut(s)	471, 502, 514, 604
BspACI	CCGC	3 cut(s)	476, 663, 763
BspCNI	CTCAG	3 cut(s)	149, 266, 1033
BspEI	TCCGGA	1 cut(s)	25
BspHI	TCATGA	4 cut(s)	147, 490, 541, 862
BspOI	GCTAGC	1 cut(s)	1031
BspPI	GGATC	3 cut(s)	17, 546, 812
BspTI	CTTAAG	2 cut(s)	304, 392
BssECI	CCNNGG	8 cut(s)	319, 406, 447, 471, 502, 514, 604, 890
BssMI	GATC	9 cut(s)	10, 22, 493, 520, 538, 553, 696, 703, 804
BssT1I	CCWWGG	5 cut(s)	319, 471, 502, 514, 604
Bst2UI	CCWGG	3 cut(s)	285, 408, 891
Bst4CI	ACNGT	2 cut(s)	154, 448
BstAFI	CTTAAG	2 cut(s)	304, 392
BstAPI	GCANNNNNTGC	1 cut(s)	854
BstC8I	GCNNGC	3 cut(s)	741, 758, 1029
BstDEI	CTNAG	4 cut(s)	136, 253, 681, 1020
BstDSI	CCRYGG	5 cut(s)	447, 471, 502, 514, 604
BstEII	GGTNACC	1 cut(s)	658
BstF5I	GGATG	2 cut(s)	101, 850
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	9 cut(s)	13, 25, 496, 523, 541, 556, 699, 706, 807
BstMAI	GTCTC	2 cut(s)	23, 382
BstMBI	GATC	9 cut(s)	10, 22, 493, 520, 538, 553, 696, 703, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 408, 854, 1024
BstNI	CCWGG	3 cut(s)	285, 408, 891
BstNSI	RCATGY	2 cut(s)	215, 760
BstPI	GGTNACC	1 cut(s)	658
BstSCI	CCNGG	3 cut(s)	283, 406, 889
BstV1I	GCAGC	2 cut(s)	747, 1036
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	22
BtgI	CCRYGG	5 cut(s)	447, 471, 502, 514, 604
BtgZI	GCGATG	1 cut(s)	451
BtsCI	GGATG	2 cut(s)	101, 850
BtsI	GCAGTG	2 cut(s)	354, 672
BtsIMutI	CAGTG	3 cut(s)	159, 354, 672
Cac8I	GCNNGC	3 cut(s)	741, 758, 1029
CciI	TCATGA	4 cut(s)	147, 490, 541, 862
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	198
CpoI	CGGWCCG	1 cut(s)	198
Csp6I	GTAC	2 cut(s)	623, 985
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CspI	CGGWCCG	1 cut(s)	198
CviQI	GTAC	2 cut(s)	623, 985
DdeI	CTNAG	4 cut(s)	136, 253, 681, 1020
DpnI	GATC	9 cut(s)	12, 24, 495, 522, 540, 555, 698, 705, 806
DpnII	GATC	9 cut(s)	10, 22, 493, 520, 538, 553, 696, 703, 804
Eco130I	CCWWGG	5 cut(s)	319, 471, 502, 514, 604
Eco24I	GRGCYC	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	198
Eco91I	GGTNACC	1 cut(s)	658
EcoO65I	GGTNACC	1 cut(s)	658
EcoRII	CCWGG	3 cut(s)	283, 406, 889
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	5 cut(s)	319, 471, 502, 514, 604
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	5 cut(s)	319, 471, 502, 514, 604
FaqI	GGGAC	1 cut(s)	586
FauNDI	CATATG	3 cut(s)	674, 710, 875
FbaI	TGATCA	3 cut(s)	493, 520, 553
Fnu4HI	GCNGC	2 cut(s)	761, 1025
FokI	GGATG	2 cut(s)	88, 857
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	2 cut(s)	761, 1025
FspBI	CTAG	3 cut(s)	320, 719, 1028
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	2 cut(s)	761, 1025
GsuI	CTGGAG	1 cut(s)	267
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	2 cut(s)	81, 925
HindII	GTYRAC	2 cut(s)	81, 925
HindIII	AAGCTT	2 cut(s)	818, 828
HpaI	GTTAAC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	530, 652
Hpy166II	GTNNAC	2 cut(s)	81, 925
Hpy188I	TCNGA	2 cut(s)	202, 642
Hpy188III	TCNNGA	6 cut(s)	14, 26, 148, 491, 542, 863
Hpy8I	GTNNAC	2 cut(s)	81, 925
Hpy99I	CGWCG	1 cut(s)	591
HpyAV	CCTTC	2 cut(s)	56, 268
HpyCH4III	ACNGT	2 cut(s)	154, 448
HpyCH4V	TGCA	5 cut(s)	239, 714, 848, 871, 882
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 408, 854, 1024
HpyF3I	CTNAG	4 cut(s)	136, 253, 681, 1020
HspAI	GCGC	1 cut(s)	206
Kpn2I	TCCGGA	1 cut(s)	25
Ksp22I	TGATCA	3 cut(s)	493, 520, 553
KspAI	GTTAAC	1 cut(s)	81
Kzo9I	GATC	9 cut(s)	10, 22, 493, 520, 538, 553, 696, 703, 804
Lsp1109I	GCAGC	2 cut(s)	747, 1036
LweI	GCATC	5 cut(s)	110, 180, 193, 272, 835
MaeI	CTAG	3 cut(s)	320, 719, 1028
MaeIII	GTNAC	3 cut(s)	45, 658, 1000
MalI	GATC	9 cut(s)	12, 24, 495, 522, 540, 555, 698, 705, 806
MboI	GATC	9 cut(s)	10, 22, 493, 520, 538, 553, 696, 703, 804
MboII	GAAGA	4 cut(s)	20, 608, 706, 907
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	3 cut(s)	328, 425, 794
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	91, 145, 529, 611, 794, 1029
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	7 cut(s)	80, 218, 305, 393, 417, 462, 815
MspCI	CTTAAG	2 cut(s)	304, 392
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	3 cut(s)	285, 408, 891
MvaI	CCWGG	3 cut(s)	285, 408, 891
MwoI	GCNNNNNNNGC	4 cut(s)	131, 408, 854, 1024
NcoI	CCATGG	4 cut(s)	471, 502, 514, 604
NdeI	CATATG	3 cut(s)	674, 710, 875
NdeII	GATC	9 cut(s)	10, 22, 493, 520, 538, 553, 696, 703, 804
NheI	GCTAGC	1 cut(s)	1027
NmuCI	GTSAC	2 cut(s)	45, 658
NspI	RCATGY	2 cut(s)	215, 760
OliI	CACNNNNGTG	1 cut(s)	665
PaeI	GCATGC	1 cut(s)	760
PagI	TCATGA	4 cut(s)	147, 490, 541, 862
PciI	ACATGT	1 cut(s)	211
PflFI	GACNNNGTC	1 cut(s)	69
PkrI	GCNGC	2 cut(s)	762, 1026
PscI	ACATGT	1 cut(s)	211
PsiI	TTATAA	1 cut(s)	344
Psp6I	CCWGG	3 cut(s)	283, 406, 889
PspEI	GGTNACC	1 cut(s)	658
PspGI	CCWGG	3 cut(s)	283, 406, 889
PspPI	GGNCC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	22
PsyI	GACNNNGTC	1 cut(s)	69
RsaI	GTAC	2 cut(s)	624, 986
RsaNI	GTAC	2 cut(s)	623, 985
Rsr2I	CGGWCCG	1 cut(s)	198
RsrII	CGGWCCG	1 cut(s)	198
SaqAI	TTAA	7 cut(s)	80, 218, 305, 393, 417, 462, 815
SatI	GCNGC	2 cut(s)	761, 1025
Sau3AI	GATC	9 cut(s)	10, 22, 493, 520, 538, 553, 696, 703, 804
Sau96I	GGNCC	1 cut(s)	198
ScrFI	CCNGG	3 cut(s)	285, 408, 891
SduI	GDGCHC	3 cut(s)	328, 425, 794
SetI	ASST	9 cut(s)	117, 325, 603, 815, 822, 832, 843, 937, 1029
SfaNI	GCATC	5 cut(s)	110, 180, 193, 272, 835
SinI	GGWCC	1 cut(s)	198
SmlI	CTYRAG	3 cut(s)	304, 392, 821
SmoI	CTYRAG	3 cut(s)	304, 392, 821
SpeI	ACTAGT	1 cut(s)	718
SphI	GCATGC	1 cut(s)	760
SsiI	CCGC	3 cut(s)	476, 663, 763
SspMI	CTAG	3 cut(s)	320, 719, 1028
StyD4I	CCNGG	3 cut(s)	283, 406, 889
StyI	CCWWGG	5 cut(s)	319, 471, 502, 514, 604
TaaI	ACNGT	2 cut(s)	154, 448
TaqI	TCGA	1 cut(s)	807
TaqII	GACCGA	1 cut(s)	186
TatI	WGTACW	2 cut(s)	622, 984
Tru1I	TTAA	7 cut(s)	80, 218, 305, 393, 417, 462, 815
Tru9I	TTAA	7 cut(s)	80, 218, 305, 393, 417, 462, 815
TscAI	CASTG	3 cut(s)	159, 361, 672
TseFI	GTSAC	2 cut(s)	45, 658
TseI	GCWGC	2 cut(s)	760, 1024
Tsp45I	GTSAC	2 cut(s)	45, 658
TspDTI	ATGAA	5 cut(s)	136, 390, 608, 611, 879
TspRI	CASTG	3 cut(s)	159, 361, 672
Tth111I	GACNNNGTC	1 cut(s)	69
Vha464I	CTTAAG	2 cut(s)	304, 392
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	1 cut(s)	898
XceI	RCATGY	2 cut(s)	215, 760
XmaJI	CCTAGG	1 cut(s)	319
XspI	CTAG	3 cut(s)	320, 719, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.