Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Reverse (-)

61977791 .. 61981561

Gene Structure 3771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004758

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGTGACAACCACCAAACGTGAACAGCATCTAAGAGAACCTTGGAGATCCTTCCCTCACAATCCTGATTCGGAGATGGAAGCGCAACATTCTGGACACGGGCATATATTTGAAGTGCATGGAGATGTGAAAGATATTGAGTCACGCTTGCGTGGTAGCAAGATTTGTGCTGAAGCGCCATGTGGATTTTCAGATCCTAATAACAGTTCCAAAGATGCTAAGGAACGGTCAGCATCAATGCAGAAGCTTTTGATAGCAGTTGTGCTCTGTGTCATTTTCATGACTGTGGAAGTTGTTGGGGGTATCAAAGCCAATAGTCTTGCTATTATGACTGATGCAGCTCATCTATTGTCAGATGTTGCAGCATTTGCAATTTCCCTGTTCTCACTGTGGGCATCAGGATGGGAGGCAACTCCACGCCAGACTTATGGCTTCTTCAGAATTGAAATACTCGGTACACTTGTTTCCATCCAGATGATATGGCTTCTTACTGGGATCCTTGTCTACGAAGCCATTGACAGACTCATCTATCAGACCGGTGAAGTTCAGGGCTTTCTCATGTTTGTTGTTTCTGCGTTTGGTTTAGTGGTTAATATTGCTATGGCAGTCTTGTTGGGTCATGATCACGGCCACGGCCATGGCCACGGGCATGATCACGGTCACGGTCACGGTCACGGCCACGACCACAGCCATAGTGACCACGATCATGGACACAGTGAACATCATCACAATCATGAACATGATGACGAGCACCATCATTCTGAGGGAGCAGATCTCACACATCCACTGCTCAATGAAAATACAAGAAAGAACAAGCAACGAAATATCAATGTGCAAGGGGCTTATCTTCATGTACTCGGTGACCTCATTCAAAGTATTGGAGTTATGATAGGTGGAGCAGTTATATGGTACAAGCCAGAATGGAAGATTATTGACTTGATATGCACCCTTGTATTCTCAGTAATTGTGCTGTGGACAACAATCAATATGATGCGCAACATTTTGGAGGTTCTTATGGAGAGCACTCCTAGAGAAATTGATGCCACAAAACTTGAGAGAGGTCTCCGTGAGATGGATGACGTTGTGGCAGTTCATGAACTACATATTTGGGCCATTACTGTTGGGAAGGTGCTACTGGCTTGCCATGTCATTGCTAAGCCGGATGCAGATACTGACGTGGTACTAGAGAAGGTGATTGACTATATCAAGAGGGAATATAACATCACTCATGTTACTATTCAGATAGAGCGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

419

Amino Acids

46.87

Weight (kDa)

5.96

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	83 - 339	1.3e-41	Cation efflux transmembrane domain
ZT_dimer	PF16916	343 - 417	4e-11	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	995
AccI	GTMKAC	1 cut(s)	504
AclWI	GGATC	4 cut(s)	42, 188, 490, 503
AcoI	YGGCCR	4 cut(s)	628, 634, 640, 676
AcuI	CTGAAG	2 cut(s)	192, 421
AfaI	GTAC	4 cut(s)	457, 855, 911, 1182
AfiI	CCNNNNNNNGG	1 cut(s)	1072
AgeI	ACCGGT	1 cut(s)	536
AgsI	TTSAA	3 cut(s)	113, 446, 872
AjiI	CACGTC	1 cut(s)	1177
AluBI	AGCT	2 cut(s)	247, 341
AluI	AGCT	2 cut(s)	247, 341
Alw21I	GWGCWC	3 cut(s)	267, 753, 1025
Alw26I	GTCTC	1 cut(s)	1067
AlwI	GGATC	4 cut(s)	42, 188, 490, 503
AlwNI	CAGNNNCTG	1 cut(s)	1172
AoxI	GGCC	5 cut(s)	628, 634, 640, 676, 1110
ApeKI	GCWGC	2 cut(s)	338, 362
AsiGI	ACCGGT	1 cut(s)	536
AspLEI	GCGC	3 cut(s)	85, 178, 996
AspS9I	GGNCC	1 cut(s)	1110
AsuHPI	GGTGA	4 cut(s)	16, 551, 872, 1204
BaeI	ACNNNNGTAYC	4 cut(s)	447, 480, 1161, 1194
BalI	TGGCCA	1 cut(s)	642
BamHI	GGATCC	1 cut(s)	495
Bbv12I	GWGCWC	3 cut(s)	267, 753, 1025
BbvI	GCAGC	2 cut(s)	350, 374
BccI	CCATC	5 cut(s)	70, 396, 476, 762, 1066
BceAI	ACGGC	3 cut(s)	643, 649, 691
BclI	TGATCA	2 cut(s)	622, 652
BcoDI	GTCTC	1 cut(s)	1067
BfaI	CTAG	2 cut(s)	1029, 1184
BfoI	RGCGCY	1 cut(s)	179
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	2 cut(s)	339, 363
BlpI	GCTNAGC	1 cut(s)	1155
BlsI	GCNGC	2 cut(s)	340, 364
BmgBI	CACGTC	1 cut(s)	1177
BmgT120I	GGNCC	1 cut(s)	1110
BmiI	GGNNCC	1 cut(s)	497
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	8 cut(s)	37, 205, 242, 325, 404, 981, 1030, 1153
BmuI	ACTGGG	1 cut(s)	501
BplI	GAGNNNNNCTC	2 cut(s)	759, 791
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	1155
BpuEI	CTTGAG	1 cut(s)	1073
BsaI	GGTCTC	1 cut(s)	1067
BsaJI	CCNNGG	4 cut(s)	41, 631, 637, 643
BsaWI	WCCGGW	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	1 cut(s)	1072
Bse118I	RCCGGY	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	496, 1140
Bse3DI	GCAATG	1 cut(s)	1149
BseDI	CCNNGG	4 cut(s)	41, 631, 637, 643
BseGI	GGATG	5 cut(s)	407, 468, 781, 1081, 1168
BseLI	CCNNNNNNNGG	1 cut(s)	1072
BseMI	GCAATG	1 cut(s)	1149
BseMII	CTCAG	2 cut(s)	753, 972
BseNI	ACTGG	2 cut(s)	496, 1140
BseXI	GCAGC	2 cut(s)	350, 374
BshFI	GGCC	5 cut(s)	630, 636, 642, 678, 1112
BshTI	ACCGGT	1 cut(s)	536
BsiHKAI	GWGCWC	3 cut(s)	267, 753, 1025
BsiSI	CCGG	2 cut(s)	537, 1160
BslI	CCNNNNNNNGG	1 cut(s)	1072
BsmAI	GTCTC	1 cut(s)	1067
BsnI	GGCC	5 cut(s)	630, 636, 642, 678, 1112
Bso31I	GGTCTC	1 cut(s)	1067
Bsp1286I	GDGCHC	3 cut(s)	267, 753, 1025
Bsp143I	GATC	7 cut(s)	47, 193, 495, 622, 652, 703, 772
Bsp1720I	GCTNAGC	1 cut(s)	1155
Bsp19I	CCATGG	1 cut(s)	637
BspANI	GGCC	5 cut(s)	630, 636, 642, 678, 1112
BspCNI	CTCAG	2 cut(s)	754, 971
BspHI	TCATGA	4 cut(s)	279, 619, 733, 1093
BspLI	GGNNCC	1 cut(s)	497
BspPI	GGATC	4 cut(s)	42, 188, 490, 503
BspTNI	GGTCTC	1 cut(s)	1067
BsrDI	GCAATG	1 cut(s)	1149
BsrFI	RCCGGY	1 cut(s)	536
BsrI	ACTGG	2 cut(s)	496, 1140
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	4 cut(s)	41, 631, 637, 643
BssMI	GATC	7 cut(s)	47, 193, 495, 622, 652, 703, 772
BssT1I	CCWWGG	2 cut(s)	41, 637
Bst4CI	ACNGT	9 cut(s)	206, 228, 286, 390, 659, 665, 671, 716, 1120
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	149, 1141
BstDEI	CTNAG	5 cut(s)	32, 219, 762, 958, 1155
BstDSI	CCRYGG	3 cut(s)	631, 637, 643
BstEII	GGTNACC	1 cut(s)	860
BstF5I	GGATG	5 cut(s)	407, 468, 781, 1081, 1168
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	3 cut(s)	85, 178, 996
BstKTI	GATC	7 cut(s)	50, 196, 498, 625, 655, 706, 775
BstMAI	GTCTC	1 cut(s)	1067
BstMBI	GATC	7 cut(s)	47, 193, 495, 622, 652, 703, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstPI	GGTNACC	1 cut(s)	860
BstV1I	GCAGC	2 cut(s)	350, 374
BstX2I	RGATCY	4 cut(s)	47, 193, 495, 772
BstXI	CCANNNNNNTGG	3 cut(s)	428, 638, 707
BstYI	RGATCY	4 cut(s)	47, 193, 495, 772
BsuRI	GGCC	5 cut(s)	630, 636, 642, 678, 1112
BtgI	CCRYGG	3 cut(s)	631, 637, 643
BtrI	CACGTC	1 cut(s)	1177
BtsCI	GGATG	5 cut(s)	407, 468, 781, 1081, 1168
BtsI	GCAGTG	1 cut(s)	785
BtsIMutI	CAGTG	3 cut(s)	386, 721, 785
Cac8I	GCNNGC	2 cut(s)	149, 1141
CaiI	CAGNNNCTG	1 cut(s)	1172
CciI	TCATGA	4 cut(s)	279, 619, 733, 1093
CfoI	GCGC	3 cut(s)	85, 178, 996
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	1110
CseI	GACGC	1 cut(s)	1238
Csp6I	GTAC	4 cut(s)	456, 854, 910, 1181
CspAI	ACCGGT	1 cut(s)	536
CspCI	CAANNNNNGTGG	2 cut(s)	1033, 1068
CviQI	GTAC	4 cut(s)	456, 854, 910, 1181
DdeI	CTNAG	5 cut(s)	32, 219, 762, 958, 1155
DpnI	GATC	7 cut(s)	49, 195, 497, 624, 654, 705, 774
DpnII	GATC	7 cut(s)	47, 193, 495, 622, 652, 703, 772
EaeI	YGGCCR	4 cut(s)	628, 634, 640, 676
Eco130I	CCWWGG	2 cut(s)	41, 637
Eco31I	GGTCTC	1 cut(s)	1067
Eco57I	CTGAAG	2 cut(s)	192, 421
Eco91I	GGTNACC	1 cut(s)	860
EcoO65I	GGTNACC	1 cut(s)	860
EcoT14I	CCWWGG	2 cut(s)	41, 637
ErhI	CCWWGG	2 cut(s)	41, 637
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FbaI	TGATCA	2 cut(s)	622, 652
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	339, 363
FokI	GGATG	5 cut(s)	414, 455, 768, 1088, 1175
Fsp4HI	GCNGC	2 cut(s)	339, 363
FspBI	CTAG	2 cut(s)	1029, 1184
FspI	TGCGCA	1 cut(s)	995
GlaI	GCGC	3 cut(s)	84, 177, 995
GluI	GCNGC	2 cut(s)	339, 363
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	5 cut(s)	630, 636, 642, 678, 1112
HapII	CCGG	2 cut(s)	537, 1160
HgaI	GACGC	1 cut(s)	1238
HhaI	GCGC	3 cut(s)	85, 178, 996
Hin6I	GCGC	3 cut(s)	83, 176, 994
HinP1I	GCGC	3 cut(s)	83, 176, 994
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	3 cut(s)	68, 140, 522
HpaII	CCGG	2 cut(s)	537, 1160
HphI	GGTGA	4 cut(s)	16, 551, 872, 1204
Hpy166II	GTNNAC	5 cut(s)	23, 458, 505, 719, 975
Hpy188I	TCNGA	7 cut(s)	73, 193, 355, 440, 534, 763, 1242
Hpy188III	TCNNGA	9 cut(s)	65, 93, 280, 399, 472, 620, 734, 1094, 1207
Hpy8I	GTNNAC	5 cut(s)	23, 458, 505, 719, 975
HpyAV	CCTTC	3 cut(s)	61, 1120, 1183
HpyCH4III	ACNGT	9 cut(s)	206, 228, 286, 390, 659, 665, 671, 716, 1120
HpyCH4IV	ACGT	3 cut(s)	19, 1080, 1176
HpyCH4V	TGCA	8 cut(s)	118, 241, 338, 362, 371, 835, 945, 1166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	5 cut(s)	32, 219, 762, 958, 1155
HpySE526I	ACGT	3 cut(s)	19, 1080, 1176
HspAI	GCGC	3 cut(s)	83, 176, 994
Ksp22I	TGATCA	2 cut(s)	622, 652
Kzo9I	GATC	7 cut(s)	47, 193, 495, 622, 652, 703, 772
LmnI	GCTCC	2 cut(s)	767, 896
Lsp1109I	GCAGC	2 cut(s)	350, 374
LweI	GCATC	8 cut(s)	37, 205, 242, 325, 404, 981, 1030, 1153
MaeI	CTAG	2 cut(s)	1029, 1184
MaeII	ACGT	3 cut(s)	19, 1080, 1176
MaeIII	GTNAC	8 cut(s)	4, 141, 659, 665, 671, 695, 860, 1231
MalI	GATC	7 cut(s)	49, 195, 497, 624, 654, 705, 774
MboI	GATC	7 cut(s)	47, 193, 495, 622, 652, 703, 772
MboII	GAAGA	3 cut(s)	427, 839, 937
MflI	RGATCY	4 cut(s)	47, 193, 495, 772
MhlI	GDGCHC	3 cut(s)	267, 753, 1025
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	4 cut(s)	372, 441, 963, 1035
MluNI	TGGCCA	1 cut(s)	642
MlyI	GAGTC	2 cut(s)	149, 516
MnlI	CCTC	7 cut(s)	66, 400, 757, 875, 1000, 1052, 1203
Mox20I	TGGCCA	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	642
MseI	TTAA	1 cut(s)	591
Msp20I	TGGCCA	1 cut(s)	642
MspI	CCGG	2 cut(s)	537, 1160
MwoI	GCNNNNNNNGC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	637
NdeII	GATC	7 cut(s)	47, 193, 495, 622, 652, 703, 772
NlaIV	GGNNCC	1 cut(s)	497
NmuCI	GTSAC	7 cut(s)	4, 141, 659, 665, 671, 695, 860
NsbI	TGCGCA	1 cut(s)	995
PagI	TCATGA	4 cut(s)	279, 619, 733, 1093
PfeI	GAWTC	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	340, 364
PleI	GAGTC	2 cut(s)	148, 516
PpsI	GAGTC	2 cut(s)	148, 516
PspEI	GGTNACC	1 cut(s)	860
PspN4I	GGNNCC	1 cut(s)	497
PspPI	GGNCC	1 cut(s)	1110
PstNI	CAGNNNCTG	1 cut(s)	1172
PsuI	RGATCY	4 cut(s)	47, 193, 495, 772
RsaI	GTAC	4 cut(s)	457, 855, 911, 1182
RsaNI	GTAC	4 cut(s)	456, 854, 910, 1181
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	2 cut(s)	339, 363
Sau3AI	GATC	7 cut(s)	47, 193, 495, 622, 652, 703, 772
Sau96I	GGNCC	1 cut(s)	1110
SchI	GAGTC	2 cut(s)	149, 516
SduI	GDGCHC	3 cut(s)	267, 753, 1025
SfaNI	GCATC	8 cut(s)	37, 205, 242, 325, 404, 981, 1030, 1153
SmlI	CTYRAG	1 cut(s)	1052
SmoI	CTYRAG	1 cut(s)	1052
Sse9I	AATT	4 cut(s)	372, 441, 963, 1035
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	2 cut(s)	1029, 1184
StyI	CCWWGG	2 cut(s)	41, 637
TaaI	ACNGT	9 cut(s)	206, 228, 286, 390, 659, 665, 671, 716, 1120
TaiI	ACGT	3 cut(s)	22, 1083, 1179
TasI	AATT	4 cut(s)	372, 441, 963, 1035
TatI	WGTACW	1 cut(s)	853
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	3 cut(s)	393, 721, 792
TseFI	GTSAC	7 cut(s)	4, 141, 659, 665, 671, 695, 860
TseI	GCWGC	2 cut(s)	338, 362
Tsp45I	GTSAC	7 cut(s)	4, 141, 659, 665, 671, 695, 860
TspDTI	ATGAA	6 cut(s)	268, 750, 810, 839, 1082, 1110
TspGWI	ACGGA	1 cut(s)	1055
TspRI	CASTG	3 cut(s)	393, 721, 792
XmiI	GTMKAC	1 cut(s)	504
XspI	CTAG	2 cut(s)	1029, 1184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.