Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

7521946 .. 7524643

Gene Structure 2698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16763

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGCCTCATGGAAGCGCAACATTCTGGACACGGGCATATATTTGAAGTGCATGGAGATGTGAAAGATATTGAGTCAAGATTGCGTGGTAGCAAGATTTGTACTGAAGCACCATGTGGATTTTCAGATCCTAATAACAGTTCCAAAGATGCTAAGGAACGGTCAGCATCAATGCGGAAGCTTTTGATAGCAGTTGTGCTCTGTGTCGTTTTCATGACTGTGGAAGTTGTTGGGGGTATCAAAGCCAATAGTCTTGCTATTATGACTGATGCAGCTCATCTATTGTCAGATGTTGCAGCATTTGCAATTTCCCTGTTCTCACTGTGGGCATCAGGATGGGAGGCAACTCCACGCCAGACTTATGGCTTCTTCAGAATTGAAATACTCGGTACACTTGTTTCCATCCAGATGATATGGCTTCTTACTGGGATCCTTGTCTACGAAGCCATTGACAGACTCATCTATCAGACCGGTGAAGTTCAGGGCTTTCTCATGTTTGTTGTTTCTGCGTTTGGTTTAGTGGTTAATATTGCTATGGCAGTCTTGTTGGGTCACGATCACGGCCACGGCCATGGCCATGGGCATGATCACGGTCACGGCCACGGCCATGGCCATGGGCACGGCCACGGTCACGGCCACGGCCACGACCACAGCCACAGCCACAGCCATAGTGACCACGATCATGGACACAGTGAACATCATCATAACACTGATAATCATCACGATCATGAACATGATGACGAGCACCATCATTCTGAGGGAGCAGATCTCACACGTCCACTGCTCACTGAAAATGCAAGAAAGAACAAGCAACGAAATATCAACGTGCAGGGGGCTTATCTTCATGTACTCGGTGACCTCATTCAAAGTATTGGAGTTATGATAGGTGGAGCAGTTATATGGTACAAGCCAGAATGGAAGATTATTGACTTGATATGCACCCTTGTATTCTCAGTAATTGTGCTGTGGACAACAATCAATATGATGCGCAACATTTTGGAGGTTCTTATGGAGAGCACTCCTAGAGAAATTGATGCCACAAAACTTGAGAGAGGTCTCTGTGAGATGGATGAGGTTGTGGCAGTTCATGAACTACATATTTGGGCCATTACTGTCGGGAAGGTGCTACTGGCTTGCCATGTCATTGTTAAGCCGGATGCAGATACTGACATGGTACTAGAGAAGGTGATAGACTATATCAAGAGGGAATATAACATCACTCATGTTACTATTCAGATAGAGCGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

416

Amino Acids

46.29

Weight (kDa)

6.03

Isoelectric Point (pI)

24.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	61 - 337	3.1e-35	Cation efflux transmembrane domain
Zip	PF02535	160 - 291	2.7e-06	ZIP Zinc transporter
ZT_dimer	PF16916	341 - 415	4.7e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	989
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	3 cut(s)	122, 424, 437
AcoI	YGGCCR	9 cut(s)	562, 568, 574, 598, 604, 610, 622, 634, 640
AcuI	CTGAAG	2 cut(s)	126, 355
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	5 cut(s)	103, 391, 849, 905, 1176
AflIII	ACRYGT	1 cut(s)	773
AgeI	ACCGGT	1 cut(s)	470
AgsI	TTSAA	3 cut(s)	47, 380, 866
AjiI	CACGTC	1 cut(s)	776
AluBI	AGCT	2 cut(s)	181, 275
AluI	AGCT	2 cut(s)	181, 275
Alw21I	GWGCWC	3 cut(s)	201, 747, 1019
Alw26I	GTCTC	1 cut(s)	1061
AlwI	GGATC	3 cut(s)	122, 424, 437
AlwNI	CAGNNNCTG	1 cut(s)	1166
ApeKI	GCWGC	2 cut(s)	272, 296
AsiGI	ACCGGT	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	19, 990
AspS9I	GGNCC	2 cut(s)	4, 1104
AsuHPI	GGTGA	3 cut(s)	485, 866, 1198
BaeGI	GKGCMC	1 cut(s)	621
BaeI	ACNNNNGTAYC	2 cut(s)	381, 414
BalI	TGGCCA	2 cut(s)	576, 612
BamHI	GGATCC	1 cut(s)	429
Bbv12I	GWGCWC	3 cut(s)	201, 747, 1019
BbvI	GCAGC	2 cut(s)	284, 308
BccI	CCATC	4 cut(s)	330, 410, 756, 1060
BceAI	ACGGC	7 cut(s)	577, 583, 613, 619, 637, 649, 655
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	1061
BfaI	CTAG	2 cut(s)	1023, 1178
BglII	AGATCT	1 cut(s)	766
BisI	GCNGC	2 cut(s)	273, 297
BlsI	GCNGC	2 cut(s)	274, 298
BmgBI	CACGTC	1 cut(s)	776
BmgT120I	GGNCC	2 cut(s)	4, 1104
BmiI	GGNNCC	1 cut(s)	431
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	7 cut(s)	139, 176, 259, 338, 975, 1024, 1147
BmuI	ACTGGG	1 cut(s)	435
BplI	GAGNNNNNCTC	2 cut(s)	753, 785
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	1067
BsaBI	GATNNNNATC	1 cut(s)	717
BsaI	GGTCTC	1 cut(s)	1061
BsaJI	CCNNGG	8 cut(s)	565, 571, 577, 601, 607, 613, 625, 637
BsaWI	WCCGGW	1 cut(s)	470
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	430, 1134
Bse8I	GATNNNNATC	1 cut(s)	717
BseDI	CCNNGG	8 cut(s)	565, 571, 577, 601, 607, 613, 625, 637
BseGI	GGATG	4 cut(s)	341, 402, 1075, 1162
BseJI	GATNNNNATC	1 cut(s)	717
BseMII	CTCAG	2 cut(s)	747, 966
BseNI	ACTGG	2 cut(s)	430, 1134
BseSI	GKGCMC	1 cut(s)	621
BseXI	GCAGC	2 cut(s)	284, 308
BsgI	GTGCAG	1 cut(s)	848
BshTI	ACCGGT	1 cut(s)	470
BsiHKAI	GWGCWC	3 cut(s)	201, 747, 1019
BsiSI	CCGG	2 cut(s)	471, 1154
BsmAI	GTCTC	1 cut(s)	1061
Bso31I	GGTCTC	1 cut(s)	1061
Bsp1286I	GDGCHC	4 cut(s)	201, 621, 747, 1019
Bsp143I	GATC	7 cut(s)	127, 429, 556, 586, 679, 724, 766
Bsp19I	CCATGG	4 cut(s)	571, 577, 607, 613
BspACI	CCGC	1 cut(s)	175
BspCNI	CTCAG	2 cut(s)	748, 965
BspHI	TCATGA	3 cut(s)	213, 727, 1087
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	3 cut(s)	122, 424, 437
BspTNI	GGTCTC	1 cut(s)	1061
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	430, 1134
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	8 cut(s)	565, 571, 577, 601, 607, 613, 625, 637
BssMI	GATC	7 cut(s)	127, 429, 556, 586, 679, 724, 766
BssT1I	CCWWGG	4 cut(s)	571, 577, 607, 613
Bst4CI	ACNGT	8 cut(s)	140, 162, 220, 324, 593, 629, 692, 1114
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	1135
BstDEI	CTNAG	3 cut(s)	153, 756, 952
BstDSI	CCRYGG	8 cut(s)	565, 571, 577, 601, 607, 613, 625, 637
BstEII	GGTNACC	1 cut(s)	854
BstF5I	GGATG	4 cut(s)	341, 402, 1075, 1162
BstHHI	GCGC	2 cut(s)	19, 990
BstKTI	GATC	7 cut(s)	130, 432, 559, 589, 682, 727, 769
BstMAI	GTCTC	1 cut(s)	1061
BstMBI	GATC	7 cut(s)	127, 429, 556, 586, 679, 724, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstPI	GGTNACC	1 cut(s)	854
BstSLI	GKGCMC	1 cut(s)	621
BstV1I	GCAGC	2 cut(s)	284, 308
BstX2I	RGATCY	3 cut(s)	127, 429, 766
BstXI	CCANNNNNNTGG	6 cut(s)	362, 572, 578, 608, 614, 683
BstYI	RGATCY	3 cut(s)	127, 429, 766
BtgI	CCRYGG	8 cut(s)	565, 571, 577, 601, 607, 613, 625, 637
BtrI	CACGTC	1 cut(s)	776
BtsCI	GGATG	4 cut(s)	341, 402, 1075, 1162
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	5 cut(s)	320, 697, 708, 779, 786
Cac8I	GCNNGC	1 cut(s)	1135
CaiI	CAGNNNCTG	1 cut(s)	1166
CciI	TCATGA	3 cut(s)	213, 727, 1087
CfoI	GCGC	2 cut(s)	19, 990
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	4, 1104
CseI	GACGC	1 cut(s)	1232
Csp6I	GTAC	5 cut(s)	102, 390, 848, 904, 1175
CspAI	ACCGGT	1 cut(s)	470
CspCI	CAANNNNNGTGG	2 cut(s)	1027, 1062
CviQI	GTAC	5 cut(s)	102, 390, 848, 904, 1175
DdeI	CTNAG	3 cut(s)	153, 756, 952
DpnI	GATC	7 cut(s)	129, 431, 558, 588, 681, 726, 768
DpnII	GATC	7 cut(s)	127, 429, 556, 586, 679, 724, 766
DraIII	CACNNNGTG	1 cut(s)	116
EaeI	YGGCCR	9 cut(s)	562, 568, 574, 598, 604, 610, 622, 634, 640
Eco130I	CCWWGG	4 cut(s)	571, 577, 607, 613
Eco31I	GGTCTC	1 cut(s)	1061
Eco57I	CTGAAG	2 cut(s)	126, 355
Eco91I	GGTNACC	1 cut(s)	854
EcoO65I	GGTNACC	1 cut(s)	854
EcoT14I	CCWWGG	4 cut(s)	571, 577, 607, 613
ErhI	CCWWGG	4 cut(s)	571, 577, 607, 613
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	273, 297
FokI	GGATG	4 cut(s)	348, 389, 1082, 1169
Fsp4HI	GCNGC	2 cut(s)	273, 297
FspBI	CTAG	2 cut(s)	1023, 1178
FspI	TGCGCA	1 cut(s)	989
GlaI	GCGC	2 cut(s)	18, 989
GluI	GCNGC	2 cut(s)	273, 297
HapII	CCGG	2 cut(s)	471, 1154
HgaI	GACGC	1 cut(s)	1232
HhaI	GCGC	2 cut(s)	19, 990
Hin6I	GCGC	2 cut(s)	17, 988
HinP1I	GCGC	2 cut(s)	17, 988
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	2 cut(s)	74, 456
HpaII	CCGG	2 cut(s)	471, 1154
HphI	GGTGA	3 cut(s)	485, 866, 1198
Hpy166II	GTNNAC	5 cut(s)	392, 439, 695, 779, 969
Hpy188I	TCNGA	6 cut(s)	127, 289, 374, 468, 757, 1236
Hpy8I	GTNNAC	5 cut(s)	392, 439, 695, 779, 969
HpyAV	CCTTC	2 cut(s)	1114, 1177
HpyCH4III	ACNGT	8 cut(s)	140, 162, 220, 324, 593, 629, 692, 1114
HpyCH4IV	ACGT	2 cut(s)	775, 825
HpyCH4V	TGCA	8 cut(s)	52, 272, 296, 305, 797, 829, 939, 1160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	3 cut(s)	153, 756, 952
HpySE526I	ACGT	2 cut(s)	775, 825
HspAI	GCGC	2 cut(s)	17, 988
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	7 cut(s)	127, 429, 556, 586, 679, 724, 766
LmnI	GCTCC	2 cut(s)	761, 890
Lsp1109I	GCAGC	2 cut(s)	284, 308
LweI	GCATC	7 cut(s)	139, 176, 259, 338, 975, 1024, 1147
MaeI	CTAG	2 cut(s)	1023, 1178
MaeII	ACGT	2 cut(s)	775, 825
MaeIII	GTNAC	6 cut(s)	551, 593, 629, 671, 854, 1225
MalI	GATC	7 cut(s)	129, 431, 558, 588, 681, 726, 768
MboI	GATC	7 cut(s)	127, 429, 556, 586, 679, 724, 766
MboII	GAAGA	3 cut(s)	361, 833, 931
MflI	RGATCY	3 cut(s)	127, 429, 766
MhlI	GDGCHC	4 cut(s)	201, 621, 747, 1019
MlsI	TGGCCA	2 cut(s)	576, 612
MluCI	AATT	4 cut(s)	306, 375, 957, 1029
MluNI	TGGCCA	2 cut(s)	576, 612
MlyI	GAGTC	2 cut(s)	83, 450
MnlI	CCTC	8 cut(s)	17, 334, 751, 869, 994, 1046, 1066, 1197
Mox20I	TGGCCA	2 cut(s)	576, 612
MscI	TGGCCA	2 cut(s)	576, 612
MseI	TTAA	2 cut(s)	525, 1149
Msp20I	TGGCCA	2 cut(s)	576, 612
MspI	CCGG	2 cut(s)	471, 1154
MwoI	GCNNNNNNNGC	1 cut(s)	302
NcoI	CCATGG	4 cut(s)	571, 577, 607, 613
NdeII	GATC	7 cut(s)	127, 429, 556, 586, 679, 724, 766
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	5 cut(s)	551, 593, 629, 671, 854
NsbI	TGCGCA	1 cut(s)	989
PagI	TCATGA	3 cut(s)	213, 727, 1087
PinAI	ACCGGT	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	274, 298
PleI	GAGTC	2 cut(s)	82, 450
PpsI	GAGTC	2 cut(s)	82, 450
PspEI	GGTNACC	1 cut(s)	854
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	2 cut(s)	4, 1104
PstNI	CAGNNNCTG	1 cut(s)	1166
PsuI	RGATCY	3 cut(s)	127, 429, 766
RsaI	GTAC	5 cut(s)	103, 391, 849, 905, 1176
RsaNI	GTAC	5 cut(s)	102, 390, 848, 904, 1175
SaqAI	TTAA	2 cut(s)	525, 1149
SatI	GCNGC	2 cut(s)	273, 297
Sau3AI	GATC	7 cut(s)	127, 429, 556, 586, 679, 724, 766
Sau96I	GGNCC	2 cut(s)	4, 1104
SchI	GAGTC	2 cut(s)	83, 450
SduI	GDGCHC	4 cut(s)	201, 621, 747, 1019
SfaNI	GCATC	7 cut(s)	139, 176, 259, 338, 975, 1024, 1147
SmlI	CTYRAG	1 cut(s)	1046
SmoI	CTYRAG	1 cut(s)	1046
Sse9I	AATT	4 cut(s)	306, 375, 957, 1029
SsiI	CCGC	1 cut(s)	175
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	2 cut(s)	1023, 1178
StyI	CCWWGG	4 cut(s)	571, 577, 607, 613
TaaI	ACNGT	8 cut(s)	140, 162, 220, 324, 593, 629, 692, 1114
TaiI	ACGT	2 cut(s)	778, 828
TasI	AATT	4 cut(s)	306, 375, 957, 1029
TatI	WGTACW	2 cut(s)	101, 847
Tru1I	TTAA	2 cut(s)	525, 1149
Tru9I	TTAA	2 cut(s)	525, 1149
TscAI	CASTG	5 cut(s)	327, 697, 715, 786, 793
TseFI	GTSAC	5 cut(s)	551, 593, 629, 671, 854
TseI	GCWGC	2 cut(s)	272, 296
Tsp45I	GTSAC	5 cut(s)	551, 593, 629, 671, 854
TspDTI	ATGAA	5 cut(s)	202, 744, 833, 1076, 1104
TspRI	CASTG	5 cut(s)	327, 697, 715, 786, 793
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	2 cut(s)	1023, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.