Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Reverse (-)

60212501 .. 60219135

Gene Structure 6635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGACCAACATTCTTCACAAAAGCATAAGCAAGAATAGGAATTCCATTTGTGTCTCTAATGATGAAATCAACAACCAAACTTTTGTTATACGAGATGACATCTTCCCACCGATTTTGACACCACAGCAGACGGCAGATTCCCAACAAAGCGGGTCATCAGTGGTGACAGCCACCAAGCGTGAACAGCATCTAAGAGAACCTTGGAGATCTTCCCCTCACATTCCTGATTCTGAGGATAGGGATAACAAGTTCAGTGCTTTATGTGATTTGGGTGGTACTGGTTGGTTGTGTGGAGCTTTTGCTCTGTTTTGTTTGCCTTTTGAGTTGGTCTTGCTTGATGGGCCTCGTGAATTTGTGTCGTCATATTCATACATTGAAGCCATTCAGGATAAGATGGAAGCACAACGTTCTGGACATGGGCATATATTTGAAGTGCATGGAGATGTGAAAGATATTGAGTCAAGCTTGCGTGGTAGCAAGATTTGTGCTGAAGCACCATGTGGATTTTCAGATCCTAATAACAGTTCCAAAGATGCTGAGGAACGGTCAGCATCAATGCGGAAGCTTTTGATAGCAGTTGTGCTCTGTGTCGTTTTCATGACTGTGGAAGTTGTTGGGGGTATCAAAGCCAACAGTCTTGCTATTATGACTGATGCAGCTCATCTATTGTCAGATGTTGCAGCATTTGCAATTTCCCTGTTCTCACTGTGGGCATCAGGATGGGAGGCAACTCCACGCCAGACTTATGGCTTCTTCAGAATTGAAATACTCGGTACACTTGTTTCCATCCAGATGATATGGCTTCTTACCGGGATCCTTGTCTACGAAGCCATTGACAGACTCATCTATCAGACAGGTGAAGTTCAGGGCTTTCTCATGTTTGTAGTTTCTGCGTTTGGTTTAGTGGTTAATATTGCTATGGCAGTCTTGTTGGGTCATGATCACGGCCATGGCCATGGCCACGGGCATGATCACGGTCACGGTCACGGCCATGGTCACAATCACAGCCACGACCACAGCCATAGTGACCACGATCATGGACACAGTGAACATCATCATAACACTGATAATCATCACGATCATGAACATGATGACGAGCACCATCAATCTGAGGGAGCAGATCTTACACACCCACTGCTCAATGAAAATACAAGAAAGAACAAGCAACGAAATATCAACCCAGAATGGAAGATTATTGACTTGATATGCACCCTTGTATTCTCAGTAATTGTGCTGTGGACAACAATCAATATGATGCGCAACATTTTGGAGGTTCTTATGGAGAGCACTCCTAGAGAAATTGATGCCACAAAACTTGAGAGAGGTCTCTGTGAGATGGATGAGGTTGTGGCAGTTCATGAACTACATATTTGGGCCATTACTGTTGGGAAGGTGCTACTGGCTTGCCATGTCATTGCTAAGCCGGATGCAGATACTGACATGGTACTAGAGAAGGTGATAGACTTTATCAAGAGGGAATATAACATCACTCATGTTACTATTCAGATAGAGCGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

506

Amino Acids

56.66

Weight (kDa)

5.66

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	189 - 315	7.7e-27	Cation efflux transmembrane domain
Zip	PF02535	288 - 373	8.9e-07	ZIP Zinc transporter
ZT_dimer	PF16916	431 - 505	8.6e-12	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1259
AccI	GTMKAC	1 cut(s)	822
AciI	CCGC	2 cut(s)	150, 559
AclI	AACGTT	1 cut(s)	406
AclWI	GGATC	3 cut(s)	506, 808, 821
AcoI	YGGCCR	4 cut(s)	946, 952, 958, 988
AcsI	RAATTY	2 cut(s)	40, 350
AcuI	CTGAAG	2 cut(s)	510, 739
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	3 cut(s)	277, 775, 1446
AgsI	TTSAA	3 cut(s)	377, 431, 764
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	4 cut(s)	296, 465, 565, 659
AluI	AGCT	4 cut(s)	296, 465, 565, 659
Alw21I	GWGCWC	3 cut(s)	585, 1101, 1289
Alw26I	GTCTC	2 cut(s)	58, 1331
AlwI	GGATC	3 cut(s)	506, 808, 821
AlwNI	CAGNNNCTG	1 cut(s)	1436
AoxI	GGCC	6 cut(s)	341, 946, 952, 958, 988, 1374
ApeKI	GCWGC	2 cut(s)	656, 680
ApoI	RAATTY	2 cut(s)	40, 350
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	1260
AspS9I	GGNCC	2 cut(s)	341, 1374
AsuC2I	CCSGG	1 cut(s)	811
AsuHPI	GGTGA	3 cut(s)	175, 869, 1468
BaeI	ACNNNNGTAYC	2 cut(s)	765, 798
BalI	TGGCCA	2 cut(s)	954, 960
BamHI	GGATCC	1 cut(s)	813
BauI	CACGAG	1 cut(s)	345
Bbv12I	GWGCWC	3 cut(s)	585, 1101, 1289
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	668, 692
BccI	CCATC	6 cut(s)	332, 388, 714, 794, 1110, 1330
BceAI	ACGGC	3 cut(s)	147, 961, 1003
BclI	TGATCA	2 cut(s)	940, 970
BcnI	CCSGG	1 cut(s)	811
BcoDI	GTCTC	2 cut(s)	58, 1331
BfaI	CTAG	2 cut(s)	1293, 1448
BglII	AGATCT	2 cut(s)	206, 1120
BisI	GCNGC	2 cut(s)	657, 681
BlpI	GCTNAGC	1 cut(s)	1419
BlsI	GCNGC	2 cut(s)	658, 682
Bme1390I	CCNGG	1 cut(s)	811
BmgT120I	GGNCC	2 cut(s)	341, 1374
BmiI	GGNNCC	1 cut(s)	815
BmrFI	CCNGG	1 cut(s)	811
BmsI	GCATC	8 cut(s)	196, 523, 560, 643, 722, 1245, 1294, 1417
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu1102I	GCTNAGC	1 cut(s)	1419
BpuEI	CTTGAG	1 cut(s)	1337
BpuMI	CCSGG	1 cut(s)	811
BsaBI	GATNNNNATC	1 cut(s)	1071
BsaI	GGTCTC	1 cut(s)	1331
BsaJI	CCNNGG	5 cut(s)	200, 949, 955, 961, 991
Bse1I	ACTGG	2 cut(s)	283, 1404
Bse3DI	GCAATG	1 cut(s)	1413
Bse8I	GATNNNNATC	1 cut(s)	1071
BseDI	CCNNGG	5 cut(s)	200, 949, 955, 961, 991
BseGI	GGATG	4 cut(s)	725, 786, 1345, 1432
BseJI	GATNNNNATC	1 cut(s)	1071
BseMI	GCAATG	1 cut(s)	1413
BseMII	CTCAG	4 cut(s)	222, 528, 1101, 1236
BseNI	ACTGG	2 cut(s)	283, 1404
BseXI	GCAGC	2 cut(s)	668, 692
BshFI	GGCC	6 cut(s)	343, 948, 954, 960, 990, 1376
BsiHKAI	GWGCWC	3 cut(s)	585, 1101, 1289
BsiSI	CCGG	2 cut(s)	810, 1424
BsmAI	GTCTC	2 cut(s)	58, 1331
BsnI	GGCC	6 cut(s)	343, 948, 954, 960, 990, 1376
Bso31I	GGTCTC	1 cut(s)	1331
Bsp1286I	GDGCHC	3 cut(s)	585, 1101, 1289
Bsp143I	GATC	8 cut(s)	206, 511, 813, 940, 970, 1033, 1078, 1120
Bsp1720I	GCTNAGC	1 cut(s)	1419
Bsp19I	CCATGG	3 cut(s)	949, 955, 991
BspACI	CCGC	2 cut(s)	150, 559
BspANI	GGCC	6 cut(s)	343, 948, 954, 960, 990, 1376
BspCNI	CTCAG	4 cut(s)	223, 529, 1102, 1235
BspHI	TCATGA	4 cut(s)	597, 937, 1081, 1357
BspLI	GGNNCC	1 cut(s)	815
BspPI	GGATC	3 cut(s)	506, 808, 821
BspTNI	GGTCTC	1 cut(s)	1331
BsrDI	GCAATG	1 cut(s)	1413
BsrI	ACTGG	2 cut(s)	283, 1404
BssECI	CCNNGG	5 cut(s)	200, 949, 955, 961, 991
BssMI	GATC	8 cut(s)	206, 511, 813, 940, 970, 1033, 1078, 1120
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	4 cut(s)	200, 949, 955, 991
Bst2BI	CACGAG	1 cut(s)	345
Bst4CI	ACNGT	9 cut(s)	524, 546, 604, 635, 708, 977, 983, 1046, 1384
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	467, 1405
BstDEI	CTNAG	6 cut(s)	191, 231, 537, 1110, 1222, 1419
BstDSI	CCRYGG	4 cut(s)	949, 955, 961, 991
BstF5I	GGATG	4 cut(s)	725, 786, 1345, 1432
BstHHI	GCGC	1 cut(s)	1260
BstKTI	GATC	8 cut(s)	209, 514, 816, 943, 973, 1036, 1081, 1123
BstMAI	GTCTC	2 cut(s)	58, 1331
BstMBI	GATC	8 cut(s)	206, 511, 813, 940, 970, 1033, 1078, 1120
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 340, 686
BstSCI	CCNGG	1 cut(s)	809
BstV1I	GCAGC	2 cut(s)	668, 692
BstX2I	RGATCY	4 cut(s)	206, 511, 813, 1120
BstXI	CCANNNNNNTGG	3 cut(s)	746, 956, 1037
BstYI	RGATCY	4 cut(s)	206, 511, 813, 1120
BsuRI	GGCC	6 cut(s)	343, 948, 954, 960, 990, 1376
BtgI	CCRYGG	4 cut(s)	949, 955, 961, 991
BtsCI	GGATG	4 cut(s)	725, 786, 1345, 1432
BtsI	GCAGTG	1 cut(s)	1133
BtsIMutI	CAGTG	6 cut(s)	165, 259, 704, 1051, 1062, 1133
Cac8I	GCNNGC	2 cut(s)	467, 1405
CaiI	CAGNNNCTG	1 cut(s)	1436
CciI	TCATGA	4 cut(s)	597, 937, 1081, 1357
CfoI	GCGC	1 cut(s)	1260
Cfr13I	GGNCC	2 cut(s)	341, 1374
CseI	GACGC	1 cut(s)	1502
Csp6I	GTAC	3 cut(s)	276, 774, 1445
CspCI	CAANNNNNGTGG	4 cut(s)	96, 131, 1297, 1332
CviQI	GTAC	3 cut(s)	276, 774, 1445
DdeI	CTNAG	6 cut(s)	191, 231, 537, 1110, 1222, 1419
DpnI	GATC	8 cut(s)	208, 513, 815, 942, 972, 1035, 1080, 1122
DpnII	GATC	8 cut(s)	206, 511, 813, 940, 970, 1033, 1078, 1120
DraIII	CACNNNGTG	1 cut(s)	500
EaeI	YGGCCR	4 cut(s)	946, 952, 958, 988
Eco130I	CCWWGG	4 cut(s)	200, 949, 955, 991
Eco31I	GGTCTC	1 cut(s)	1331
Eco57I	CTGAAG	2 cut(s)	510, 739
EcoRI	GAATTC	1 cut(s)	40
EcoT14I	CCWWGG	4 cut(s)	200, 949, 955, 991
ErhI	CCWWGG	4 cut(s)	200, 949, 955, 991
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	2 cut(s)	940, 970
FblI	GTMKAC	1 cut(s)	822
Fnu4HI	GCNGC	2 cut(s)	657, 681
FokI	GGATG	4 cut(s)	732, 773, 1352, 1439
Fsp4HI	GCNGC	2 cut(s)	657, 681
FspBI	CTAG	2 cut(s)	1293, 1448
FspI	TGCGCA	1 cut(s)	1259
GlaI	GCGC	1 cut(s)	1259
GluI	GCNGC	2 cut(s)	657, 681
HaeIII	GGCC	6 cut(s)	343, 948, 954, 960, 990, 1376
HapII	CCGG	2 cut(s)	810, 1424
HgaI	GACGC	1 cut(s)	1502
HhaI	GCGC	1 cut(s)	1260
Hin6I	GCGC	1 cut(s)	1258
HinP1I	GCGC	1 cut(s)	1258
HindIII	AAGCTT	2 cut(s)	463, 563
HinfI	GANTC	4 cut(s)	137, 227, 458, 840
HpaII	CCGG	2 cut(s)	810, 1424
HphI	GGTGA	3 cut(s)	175, 869, 1468
Hpy166II	GTNNAC	5 cut(s)	182, 776, 823, 1049, 1239
Hpy188I	TCNGA	7 cut(s)	232, 511, 673, 758, 852, 1111, 1506
Hpy8I	GTNNAC	5 cut(s)	182, 776, 823, 1049, 1239
HpyAV	CCTTC	2 cut(s)	1384, 1447
HpyCH4III	ACNGT	9 cut(s)	524, 546, 604, 635, 708, 977, 983, 1046, 1384
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	6 cut(s)	436, 656, 680, 689, 1209, 1430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 340, 686
HpyF3I	CTNAG	6 cut(s)	191, 231, 537, 1110, 1222, 1419
HpySE526I	ACGT	1 cut(s)	406
HspAI	GCGC	1 cut(s)	1258
Ksp22I	TGATCA	2 cut(s)	940, 970
Kzo9I	GATC	8 cut(s)	206, 511, 813, 940, 970, 1033, 1078, 1120
LmnI	GCTCC	2 cut(s)	293, 1115
Lsp1109I	GCAGC	2 cut(s)	668, 692
LweI	GCATC	8 cut(s)	196, 523, 560, 643, 722, 1245, 1294, 1417
MaeI	CTAG	2 cut(s)	1293, 1448
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	6 cut(s)	163, 977, 983, 995, 1025, 1495
MalI	GATC	8 cut(s)	208, 513, 815, 942, 972, 1035, 1080, 1122
MboI	GATC	8 cut(s)	206, 511, 813, 940, 970, 1033, 1078, 1120
MboII	GAAGA	5 cut(s)	5, 94, 201, 745, 1201
MflI	RGATCY	4 cut(s)	206, 511, 813, 1120
MhlI	GDGCHC	3 cut(s)	585, 1101, 1289
MlsI	TGGCCA	2 cut(s)	954, 960
MluCI	AATT	6 cut(s)	40, 350, 690, 759, 1227, 1299
MluNI	TGGCCA	2 cut(s)	954, 960
MlyI	GAGTC	2 cut(s)	467, 834
Mox20I	TGGCCA	2 cut(s)	954, 960
MroXI	GAANNNNTTC	1 cut(s)	381
MscI	TGGCCA	2 cut(s)	954, 960
MseI	TTAA	1 cut(s)	909
Msp20I	TGGCCA	2 cut(s)	954, 960
MspI	CCGG	2 cut(s)	810, 1424
MspR9I	CCNGG	1 cut(s)	811
MwoI	GCNNNNNNNGC	3 cut(s)	184, 340, 686
NciI	CCSGG	1 cut(s)	811
NcoI	CCATGG	3 cut(s)	949, 955, 991
NdeII	GATC	8 cut(s)	206, 511, 813, 940, 970, 1033, 1078, 1120
NlaIV	GGNNCC	1 cut(s)	815
NmuCI	GTSAC	5 cut(s)	163, 977, 983, 995, 1025
NsbI	TGCGCA	1 cut(s)	1259
PagI	TCATGA	4 cut(s)	597, 937, 1081, 1357
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	137, 227
PkrI	GCNGC	2 cut(s)	658, 682
PleI	GAGTC	2 cut(s)	466, 834
PpsI	GAGTC	2 cut(s)	466, 834
Psp1406I	AACGTT	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	815
PspPI	GGNCC	2 cut(s)	341, 1374
PstNI	CAGNNNCTG	1 cut(s)	1436
PsuI	RGATCY	4 cut(s)	206, 511, 813, 1120
RsaI	GTAC	3 cut(s)	277, 775, 1446
RsaNI	GTAC	3 cut(s)	276, 774, 1445
SaqAI	TTAA	1 cut(s)	909
SatI	GCNGC	2 cut(s)	657, 681
Sau3AI	GATC	8 cut(s)	206, 511, 813, 940, 970, 1033, 1078, 1120
Sau96I	GGNCC	2 cut(s)	341, 1374
SchI	GAGTC	2 cut(s)	467, 834
ScrFI	CCNGG	1 cut(s)	811
SduI	GDGCHC	3 cut(s)	585, 1101, 1289
SfaNI	GCATC	8 cut(s)	196, 523, 560, 643, 722, 1245, 1294, 1417
SmlI	CTYRAG	1 cut(s)	1316
SmoI	CTYRAG	1 cut(s)	1316
Sse9I	AATT	6 cut(s)	40, 350, 690, 759, 1227, 1299
SsiI	CCGC	2 cut(s)	150, 559
SspI	AATATT	1 cut(s)	913
SspMI	CTAG	2 cut(s)	1293, 1448
StyD4I	CCNGG	1 cut(s)	809
StyI	CCWWGG	4 cut(s)	200, 949, 955, 991
TaaI	ACNGT	9 cut(s)	524, 546, 604, 635, 708, 977, 983, 1046, 1384
TaiI	ACGT	1 cut(s)	409
TasI	AATT	6 cut(s)	40, 350, 690, 759, 1227, 1299
TfiI	GAWTC	2 cut(s)	137, 227
Tru1I	TTAA	1 cut(s)	909
Tru9I	TTAA	1 cut(s)	909
TscAI	CASTG	6 cut(s)	165, 259, 711, 1051, 1069, 1140
TseFI	GTSAC	5 cut(s)	163, 977, 983, 995, 1025
TseI	GCWGC	2 cut(s)	656, 680
Tsp45I	GTSAC	5 cut(s)	163, 977, 983, 995, 1025
TspDTI	ATGAA	7 cut(s)	78, 357, 586, 1098, 1158, 1346, 1374
TspRI	CASTG	6 cut(s)	165, 259, 711, 1051, 1069, 1140
XapI	RAATTY	2 cut(s)	40, 350
XmiI	GTMKAC	1 cut(s)	822
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	2 cut(s)	1293, 1448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.