Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Reverse (-)

5950362 .. 5953758

Gene Structure 3397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10450.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAAGCGCAACATTCTGGACACGGGCATATAATTGAAGTGCATGGAGATGTGAAAGATATTGAGTCAAGCTTGCGTGGTAACAAGGTTTGTGCGGAAGCACCATGTGGATTTTCAGATCCTAATAACAGTTCCAAAGATGCTAAGGAACGATCAGCATCAATGCGGAAGCTTTTGATAGCAGTTGTGCTCTGTGTCATTTTCATGACTGTGGAAGTTGTTGGGGGTATTAAAGCCAATAGTCTTGCTATTATGACTGATGCAGCTCATCTATTGTCGGATGTTGCAGCATTTGCAATTTCCTTGTTCTCGCTATGGGCATCCGGATGGGAAGCAACTCCACGCCAGACTTATGGCTTCTTCAGAATTGAAATACTCGGCACACTTGTTTCCATTCAGATGATATGGCTTCTTACTGGGATTCTTGTTTATGAAGCCATTGCTAGACTCATTAATGAGACCGGTGAAGTTAAGGGATTTTTGATGTTTGTTGTTTCTGCATTTGGTTTAGTGGTTAATATTGTTATGGCGTTCCTGTTGGGTCATGATCATGGCCACGGGGAGCATGATCATGGTCACGGTCATGACCATGGTCACAACCACAGCCATAGTAACCACAATCATGGACACAGTGGACATCATCATAACAATGAGGACCATCACGATCATGGACATGATGATGGGCACCATCATTCTGAGGGAGGAGATCACACACATCCACTGCTGAATGAAAATGCAAAACAGAAGAAACAACGAAATATCAACGTGCAAGGTGCTTATCTTCATGTACTCGGTGACCTCATTCAAAGTATTGGAGTTATGATAGGTGGAGCAGTCATATGGTACAAGCCAGAGTGGAAGATTATTGACTTGATATGCACGCTTGTATTCTCAGTAATTGTGCTATGGACAACGATCAAAATGATGCGCAACATTTTGGAGGTTCTTATGGAGAGCACTCCGAGAGAAATTGATGCCACAAAACTTGAGAAAGGTCTCTGTGAGATGGATGAGGTTGTGGCAGTTCATGAACTACATATTTGGGCCATTACTGTTGGGAAGGTGCTGCTGGCTTGCCATGTCATTGCTAGGCCGGATGCGGATACTGACATGGTACTAGAGAAGGTGATAGACTATATCAAGAGGGAATATAATATCACTCATGTTACTATTCAGATAGAGCGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

397

Amino Acids

44.03

Weight (kDa)

6.02

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	58 - 317	7.3e-43	Cation efflux transmembrane domain
ZT_dimer	PF16916	321 - 395	2.5e-12	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	929
AccB1I	GGYRCC	1 cut(s)	684
AccIII	TCCGGA	1 cut(s)	323
AciI	CCGC	3 cut(s)	95, 166, 1100
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	553
AcuI	CTGAAG	1 cut(s)	346
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	3 cut(s)	789, 845, 1116
AgeI	ACCGGT	1 cut(s)	461
AgsI	TTSAA	3 cut(s)	38, 371, 806
AluBI	AGCT	3 cut(s)	72, 172, 266
AluI	AGCT	3 cut(s)	72, 172, 266
Alw21I	GWGCWC	2 cut(s)	192, 959
Alw26I	GTCTC	2 cut(s)	452, 1001
AlwI	GGATC	1 cut(s)	113
Aor13HI	TCCGGA	1 cut(s)	323
AoxI	GGCC	3 cut(s)	553, 1044, 1091
ApeKI	GCWGC	3 cut(s)	263, 287, 1066
AseI	ATTAAT	1 cut(s)	453
AsiGI	ACCGGT	1 cut(s)	461
AspLEI	GCGC	2 cut(s)	10, 930
AspS9I	GGNCC	2 cut(s)	655, 1044
AsuHPI	GGTGA	3 cut(s)	476, 806, 1138
AvaII	GGWCC	1 cut(s)	655
BaeGI	GKGCMC	1 cut(s)	687
BalI	TGGCCA	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	684
Bbv12I	GWGCWC	2 cut(s)	192, 959
BbvI	GCAGC	3 cut(s)	275, 299, 1053
BccI	CCATC	5 cut(s)	321, 666, 674, 696, 1000
BciVI	GTATCC	1 cut(s)	1096
BclI	TGATCA	2 cut(s)	547, 568
BcoDI	GTCTC	2 cut(s)	452, 1001
BfaI	CTAG	3 cut(s)	444, 1089, 1118
BfuI	GTATCC	1 cut(s)	1096
BisI	GCNGC	3 cut(s)	264, 288, 1067
BlsI	GCNGC	3 cut(s)	265, 289, 1068
Bme18I	GGWCC	1 cut(s)	655
BmgT120I	GGNCC	2 cut(s)	655, 1044
BmiI	GGNNCC	1 cut(s)	686
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	7 cut(s)	130, 167, 250, 329, 915, 964, 1087
BmuI	ACTGGG	1 cut(s)	426
BoxI	GACNNNNGTC	1 cut(s)	591
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	1007
BsaBI	GATNNNNATC	1 cut(s)	157
BsaI	GGTCTC	2 cut(s)	452, 1001
BsaJI	CCNNGG	2 cut(s)	556, 589
BsaWI	WCCGGW	2 cut(s)	323, 461
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	2 cut(s)	438, 1083
Bse8I	GATNNNNATC	1 cut(s)	157
BseAI	TCCGGA	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	556, 589
BseGI	GGATG	6 cut(s)	286, 320, 332, 715, 1015, 1102
BseJI	GATNNNNATC	1 cut(s)	157
BseMI	GCAATG	2 cut(s)	438, 1083
BseMII	CTCAG	2 cut(s)	687, 906
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	717
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	3 cut(s)	275, 299, 1053
BshFI	GGCC	3 cut(s)	555, 1046, 1093
BshNI	GGYRCC	1 cut(s)	684
BshTI	ACCGGT	1 cut(s)	461
BsiHKAI	GWGCWC	2 cut(s)	192, 959
BsiSI	CCGG	3 cut(s)	324, 462, 1094
BsmAI	GTCTC	2 cut(s)	452, 1001
BsnI	GGCC	3 cut(s)	555, 1046, 1093
Bso31I	GGTCTC	2 cut(s)	452, 1001
Bsp1286I	GDGCHC	3 cut(s)	192, 687, 959
Bsp13I	TCCGGA	1 cut(s)	323
Bsp143I	GATC	7 cut(s)	118, 152, 547, 568, 664, 706, 915
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	3 cut(s)	95, 166, 1100
BspANI	GGCC	3 cut(s)	555, 1046, 1093
BspCNI	CTCAG	2 cut(s)	688, 905
BspEI	TCCGGA	1 cut(s)	323
BspHI	TCATGA	4 cut(s)	204, 544, 583, 1027
BspLI	GGNNCC	1 cut(s)	686
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	684
BspTNI	GGTCTC	2 cut(s)	452, 1001
BsrDI	GCAATG	2 cut(s)	438, 1083
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	556, 589
BssMI	GATC	7 cut(s)	118, 152, 547, 568, 664, 706, 915
BssT1I	CCWWGG	1 cut(s)	589
Bst4CI	ACNGT	5 cut(s)	131, 211, 581, 632, 1054
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	4 cut(s)	74, 881, 1071, 1075
BstDEI	CTNAG	3 cut(s)	144, 696, 892
BstDSI	CCRYGG	2 cut(s)	556, 589
BstEII	GGTNACC	1 cut(s)	794
BstF5I	GGATG	6 cut(s)	286, 320, 332, 715, 1015, 1102
BstHHI	GCGC	2 cut(s)	10, 930
BstKTI	GATC	7 cut(s)	121, 155, 550, 571, 667, 709, 918
BstMAI	GTCTC	2 cut(s)	452, 1001
BstMBI	GATC	7 cut(s)	118, 152, 547, 568, 664, 706, 915
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstPAI	GACNNNNGTC	1 cut(s)	591
BstPI	GGTNACC	1 cut(s)	794
BstSLI	GKGCMC	1 cut(s)	687
BstV1I	GCAGC	3 cut(s)	275, 299, 1053
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	2 cut(s)	353, 623
BstYI	RGATCY	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	1096
BsuRI	GGCC	3 cut(s)	555, 1046, 1093
BtgI	CCRYGG	2 cut(s)	556, 589
BtsCI	GGATG	6 cut(s)	286, 320, 332, 715, 1015, 1102
BtsI	GCAGTG	1 cut(s)	719
BtsIMutI	CAGTG	2 cut(s)	637, 719
Cac8I	GCNNGC	4 cut(s)	74, 881, 1071, 1075
CciI	TCATGA	4 cut(s)	204, 544, 583, 1027
CfoI	GCGC	2 cut(s)	10, 930
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	2 cut(s)	655, 1044
CseI	GACGC	1 cut(s)	1172
Csp6I	GTAC	3 cut(s)	788, 844, 1115
CspAI	ACCGGT	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	967, 1002
CviQI	GTAC	3 cut(s)	788, 844, 1115
DdeI	CTNAG	3 cut(s)	144, 696, 892
DpnI	GATC	7 cut(s)	120, 154, 549, 570, 666, 708, 917
DpnII	GATC	7 cut(s)	118, 152, 547, 568, 664, 706, 915
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	589
Eco31I	GGTCTC	2 cut(s)	452, 1001
Eco47I	GGWCC	1 cut(s)	655
Eco57I	CTGAAG	1 cut(s)	346
Eco91I	GGTNACC	1 cut(s)	794
EcoO65I	GGTNACC	1 cut(s)	794
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FauNDI	CATATG	1 cut(s)	839
FbaI	TGATCA	2 cut(s)	547, 568
Fnu4HI	GCNGC	3 cut(s)	264, 288, 1067
FokI	GGATG	6 cut(s)	293, 307, 339, 702, 1022, 1109
Fsp4HI	GCNGC	3 cut(s)	264, 288, 1067
FspBI	CTAG	3 cut(s)	444, 1089, 1118
FspI	TGCGCA	1 cut(s)	929
GlaI	GCGC	2 cut(s)	9, 929
GluI	GCNGC	3 cut(s)	264, 288, 1067
HaeIII	GGCC	3 cut(s)	555, 1046, 1093
HapII	CCGG	3 cut(s)	324, 462, 1094
HgaI	GACGC	1 cut(s)	1172
HhaI	GCGC	2 cut(s)	10, 930
Hin6I	GCGC	2 cut(s)	8, 928
HinP1I	GCGC	2 cut(s)	8, 928
HindIII	AAGCTT	2 cut(s)	70, 170
HinfI	GANTC	3 cut(s)	65, 421, 447
HpaII	CCGG	3 cut(s)	324, 462, 1094
HphI	GGTGA	3 cut(s)	476, 806, 1138
Hpy166II	GTNNAC	1 cut(s)	635
Hpy188I	TCNGA	7 cut(s)	118, 280, 365, 399, 697, 963, 1176
Hpy188III	TCNNGA	8 cut(s)	18, 205, 324, 545, 584, 662, 1028, 1141
Hpy8I	GTNNAC	1 cut(s)	635
HpyAV	CCTTC	2 cut(s)	1054, 1117
HpyCH4III	ACNGT	5 cut(s)	131, 211, 581, 632, 1054
HpyCH4IV	ACGT	1 cut(s)	765
HpyCH4V	TGCA	8 cut(s)	43, 263, 287, 296, 500, 737, 769, 879
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	3 cut(s)	144, 696, 892
HpySE526I	ACGT	1 cut(s)	765
HspAI	GCGC	2 cut(s)	8, 928
Kpn2I	TCCGGA	1 cut(s)	323
Ksp22I	TGATCA	2 cut(s)	547, 568
Kzo9I	GATC	7 cut(s)	118, 152, 547, 568, 664, 706, 915
LmnI	GCTCC	2 cut(s)	562, 830
LpnPI	CCDG	9 cut(s)	3, 337, 359, 402, 475, 548, 864, 1055, 1107
Lsp1109I	GCAGC	3 cut(s)	275, 299, 1053
LweI	GCATC	7 cut(s)	130, 167, 250, 329, 915, 964, 1087
MaeI	CTAG	3 cut(s)	444, 1089, 1118
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	6 cut(s)	80, 575, 593, 611, 794, 1165
MalI	GATC	7 cut(s)	120, 154, 549, 570, 666, 708, 917
MboI	GATC	7 cut(s)	118, 152, 547, 568, 664, 706, 915
MboII	GAAGA	4 cut(s)	352, 757, 773, 871
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	3 cut(s)	192, 687, 959
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	5 cut(s)	33, 297, 366, 897, 969
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	2 cut(s)	74, 441
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	7 cut(s)	646, 691, 695, 809, 934, 1006, 1137
Mox20I	TGGCCA	1 cut(s)	555
MroI	TCCGGA	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	4 cut(s)	231, 453, 471, 516
Msp20I	TGGCCA	1 cut(s)	555
MspI	CCGG	3 cut(s)	324, 462, 1094
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	839
NdeII	GATC	7 cut(s)	118, 152, 547, 568, 664, 706, 915
NlaIV	GGNNCC	1 cut(s)	686
NmeAIII	GCCGAG	1 cut(s)	357
NmuCI	GTSAC	3 cut(s)	575, 593, 794
NsbI	TGCGCA	1 cut(s)	929
PagI	TCATGA	4 cut(s)	204, 544, 583, 1027
PfeI	GAWTC	1 cut(s)	421
PinAI	ACCGGT	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	265, 289, 1068
PleI	GAGTC	2 cut(s)	73, 441
PpsI	GAGTC	2 cut(s)	73, 441
PshAI	GACNNNNGTC	1 cut(s)	591
PshBI	ATTAAT	1 cut(s)	453
PspEI	GGTNACC	1 cut(s)	794
PspN4I	GGNNCC	1 cut(s)	686
PspPI	GGNCC	2 cut(s)	655, 1044
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	3 cut(s)	789, 845, 1116
RsaNI	GTAC	3 cut(s)	788, 844, 1115
SaqAI	TTAA	4 cut(s)	231, 453, 471, 516
SatI	GCNGC	3 cut(s)	264, 288, 1067
Sau3AI	GATC	7 cut(s)	118, 152, 547, 568, 664, 706, 915
Sau96I	GGNCC	2 cut(s)	655, 1044
SchI	GAGTC	2 cut(s)	74, 441
SduI	GDGCHC	3 cut(s)	192, 687, 959
SfaNI	GCATC	7 cut(s)	130, 167, 250, 329, 915, 964, 1087
SinI	GGWCC	1 cut(s)	655
SmlI	CTYRAG	1 cut(s)	986
SmoI	CTYRAG	1 cut(s)	986
Sse9I	AATT	5 cut(s)	33, 297, 366, 897, 969
SsiI	CCGC	3 cut(s)	95, 166, 1100
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	3 cut(s)	444, 1089, 1118
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	5 cut(s)	131, 211, 581, 632, 1054
TaiI	ACGT	1 cut(s)	768
TasI	AATT	5 cut(s)	33, 297, 366, 897, 969
TatI	WGTACW	1 cut(s)	787
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	4 cut(s)	231, 453, 471, 516
Tru9I	TTAA	4 cut(s)	231, 453, 471, 516
TscAI	CASTG	2 cut(s)	637, 726
TseFI	GTSAC	3 cut(s)	575, 593, 794
TseI	GCWGC	3 cut(s)	263, 287, 1066
Tsp45I	GTSAC	3 cut(s)	575, 593, 794
TspDTI	ATGAA	6 cut(s)	193, 447, 744, 773, 1016, 1044
TspRI	CASTG	2 cut(s)	637, 726
VpaK11BI	GGWCC	1 cut(s)	655
VspI	ATTAAT	1 cut(s)	453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	665
XspI	CTAG	3 cut(s)	444, 1089, 1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.