Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

6781256 .. 6783841

Gene Structure 2586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG089100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAAGCGCAACATTCTGGACACGGGCATATATTTGAAGTGCATGGAGATGTGAAAGATATTGAGTCAAGATTGCGTGGTAGCAAGATTTGTACTGAAGCACCATGTGGATTTTCAGATCCTAATAACAGTTCCAAGGATGCTAAGGAACGGTCAGCATCAATGCGGAAGCTTTTGATAGCAGTTGTGCTCTGTGTCGTTTTCATGACTGTGGAAGTTGTTGGGGGTATCAAAGCCAATAGTCTTGCTATTATGACTGATGCAGCTCATCTATTGTCAGATGTTGCAGCATTTGCAATTTCCCTGTTCTCACTGTGGGCATCAGGATGGGAGGCAACTCCACGCCAGACTTATGGCTTCTTCAGAATTGAAATACTCGGTACACTTGTTTCCATCCAGATGATATGGCTTCTTACTGGGATCCTTGTCTACGAAGCCATTGACAGACTCATCTATCAGACCGGTGAAGTTCAGGGCTTTCTCATGTTTGTTGTTTCTGCGTTTGGTTTAGTGGTTAATATTGCTATGGCAGTCTTGTTGGGTCACGATCACGGCCACGGGCATGATCACGGTCATGGCCACGGCCACGACCACGACCACAGCCATAGTGACCACGATCATGGACACAGTGAACATCATCATAACACTGATAATCATCACGATCATGAACATGATGACGAGCACCATCATTCTGAGGGAGCAGATCTCACACGTCCACTGCTCACTGAAAATGCAAGAAAGAACAAGCAACGAAATATCAACGTGCAGGGGGCTTATCTTCATGTACTCGGTGACCTCATTCAAAGTATTGGAGTTATGATAGGTGGAGCAGTTATATGGTACAAGCCAGAATGGAAGATTATTGACTTGATATGCACCCTTGTATTCTCAGTAATTGTGCTGTGGACAACAATCAATATGATGCGCAACATTTTGGAGGTTCTTATGGAGAGCACTCCTAGAGAAATTGATGCCACAAAACTTGAGAGAGGTCTCTGTGAGATGGATGAGGTTGTGGCAGTGCATGAACTACATATTTGGGCCATTACTGTCGGGAAGGTGCTACTGGCTTGCCATGTCATTGTTAAGCCGGATGCAGATACTGACATGGTACTAGAGAAGGTGATAGACTATATCAAGAGGGAATATAACATCACTCATGTTACTATTCAGATAGAGCGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

395

Amino Acids

44.24

Weight (kDa)

5.8

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	58 - 316	6e-42	Cation efflux transmembrane domain
Zip	PF02535	157 - 270	3.9e-06	ZIP Zinc transporter
ZT_dimer	PF16916	320 - 394	4.3e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	926
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	3 cut(s)	113, 415, 428
AcoI	YGGCCR	3 cut(s)	553, 577, 583
AcuI	CTGAAG	2 cut(s)	117, 346
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	5 cut(s)	94, 382, 786, 842, 1113
AflIII	ACRYGT	1 cut(s)	710
AgeI	ACCGGT	1 cut(s)	461
AgsI	TTSAA	3 cut(s)	38, 371, 803
AjiI	CACGTC	1 cut(s)	713
AluBI	AGCT	2 cut(s)	172, 266
AluI	AGCT	2 cut(s)	172, 266
Alw21I	GWGCWC	3 cut(s)	192, 684, 956
Alw26I	GTCTC	1 cut(s)	998
AlwI	GGATC	3 cut(s)	113, 415, 428
AlwNI	CAGNNNCTG	1 cut(s)	1103
AoxI	GGCC	4 cut(s)	553, 577, 583, 1041
ApeKI	GCWGC	2 cut(s)	263, 287
AsiGI	ACCGGT	1 cut(s)	461
AspLEI	GCGC	2 cut(s)	10, 927
AspS9I	GGNCC	1 cut(s)	1041
AsuHPI	GGTGA	3 cut(s)	476, 803, 1135
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BalI	TGGCCA	1 cut(s)	579
BamHI	GGATCC	1 cut(s)	420
Bbv12I	GWGCWC	3 cut(s)	192, 684, 956
BbvI	GCAGC	2 cut(s)	275, 299
BccI	CCATC	4 cut(s)	321, 401, 693, 997
BceAI	ACGGC	2 cut(s)	568, 598
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	998
BfaI	CTAG	2 cut(s)	960, 1115
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	2 cut(s)	264, 288
BlsI	GCNGC	2 cut(s)	265, 289
BmgBI	CACGTC	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	1041
BmiI	GGNNCC	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	7 cut(s)	130, 167, 250, 329, 912, 961, 1084
BmuI	ACTGGG	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	690, 722
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	1004
BsaBI	GATNNNNATC	1 cut(s)	654
BsaI	GGTCTC	1 cut(s)	998
BsaJI	CCNNGG	3 cut(s)	135, 556, 580
BsaWI	WCCGGW	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	421, 1071
Bse8I	GATNNNNATC	1 cut(s)	654
BseDI	CCNNGG	3 cut(s)	135, 556, 580
BseGI	GGATG	5 cut(s)	145, 332, 393, 1012, 1099
BseJI	GATNNNNATC	1 cut(s)	654
BseMII	CTCAG	2 cut(s)	684, 903
BseNI	ACTGG	2 cut(s)	421, 1071
BseXI	GCAGC	2 cut(s)	275, 299
BsgI	GTGCAG	1 cut(s)	785
BshFI	GGCC	4 cut(s)	555, 579, 585, 1043
BshTI	ACCGGT	1 cut(s)	461
BsiHKAI	GWGCWC	3 cut(s)	192, 684, 956
BsiSI	CCGG	2 cut(s)	462, 1091
BsmAI	GTCTC	1 cut(s)	998
BsnI	GGCC	4 cut(s)	555, 579, 585, 1043
Bso31I	GGTCTC	1 cut(s)	998
Bsp1286I	GDGCHC	3 cut(s)	192, 684, 956
Bsp143I	GATC	7 cut(s)	118, 420, 547, 565, 616, 661, 703
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	4 cut(s)	555, 579, 585, 1043
BspCNI	CTCAG	2 cut(s)	685, 902
BspHI	TCATGA	2 cut(s)	204, 664
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	3 cut(s)	113, 415, 428
BspTNI	GGTCTC	1 cut(s)	998
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	421, 1071
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	3 cut(s)	135, 556, 580
BssMI	GATC	7 cut(s)	118, 420, 547, 565, 616, 661, 703
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	7 cut(s)	131, 153, 211, 315, 572, 629, 1051
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	1072
BstDEI	CTNAG	3 cut(s)	144, 693, 889
BstDSI	CCRYGG	2 cut(s)	556, 580
BstEII	GGTNACC	1 cut(s)	791
BstF5I	GGATG	5 cut(s)	145, 332, 393, 1012, 1099
BstHHI	GCGC	2 cut(s)	10, 927
BstKTI	GATC	7 cut(s)	121, 423, 550, 568, 619, 664, 706
BstMAI	GTCTC	1 cut(s)	998
BstMBI	GATC	7 cut(s)	118, 420, 547, 565, 616, 661, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstPI	GGTNACC	1 cut(s)	791
BstV1I	GCAGC	2 cut(s)	275, 299
BstX2I	RGATCY	3 cut(s)	118, 420, 703
BstXI	CCANNNNNNTGG	2 cut(s)	353, 620
BstYI	RGATCY	3 cut(s)	118, 420, 703
BsuRI	GGCC	4 cut(s)	555, 579, 585, 1043
BtgI	CCRYGG	2 cut(s)	556, 580
BtrI	CACGTC	1 cut(s)	713
BtsCI	GGATG	5 cut(s)	145, 332, 393, 1012, 1099
BtsI	GCAGTG	2 cut(s)	716, 1026
BtsIMutI	CAGTG	6 cut(s)	311, 634, 645, 716, 723, 1026
Cac8I	GCNNGC	1 cut(s)	1072
CaiI	CAGNNNCTG	1 cut(s)	1103
CciI	TCATGA	2 cut(s)	204, 664
CfoI	GCGC	2 cut(s)	10, 927
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	1041
CseI	GACGC	1 cut(s)	1169
Csp6I	GTAC	5 cut(s)	93, 381, 785, 841, 1112
CspAI	ACCGGT	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	964, 999
CviQI	GTAC	5 cut(s)	93, 381, 785, 841, 1112
DdeI	CTNAG	3 cut(s)	144, 693, 889
DpnI	GATC	7 cut(s)	120, 422, 549, 567, 618, 663, 705
DpnII	GATC	7 cut(s)	118, 420, 547, 565, 616, 661, 703
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	3 cut(s)	553, 577, 583
Eco130I	CCWWGG	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	998
Eco57I	CTGAAG	2 cut(s)	117, 346
Eco91I	GGTNACC	1 cut(s)	791
EcoO65I	GGTNACC	1 cut(s)	791
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	264, 288
FokI	GGATG	5 cut(s)	152, 339, 380, 1019, 1106
Fsp4HI	GCNGC	2 cut(s)	264, 288
FspBI	CTAG	2 cut(s)	960, 1115
FspI	TGCGCA	1 cut(s)	926
GlaI	GCGC	2 cut(s)	9, 926
GluI	GCNGC	2 cut(s)	264, 288
HaeIII	GGCC	4 cut(s)	555, 579, 585, 1043
HapII	CCGG	2 cut(s)	462, 1091
HgaI	GACGC	1 cut(s)	1169
HhaI	GCGC	2 cut(s)	10, 927
Hin6I	GCGC	2 cut(s)	8, 925
HinP1I	GCGC	2 cut(s)	8, 925
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	2 cut(s)	65, 447
HpaII	CCGG	2 cut(s)	462, 1091
HphI	GGTGA	3 cut(s)	476, 803, 1135
Hpy166II	GTNNAC	5 cut(s)	383, 430, 632, 716, 906
Hpy188I	TCNGA	6 cut(s)	118, 280, 365, 459, 694, 1173
Hpy8I	GTNNAC	5 cut(s)	383, 430, 632, 716, 906
HpyAV	CCTTC	2 cut(s)	1051, 1114
HpyCH4III	ACNGT	7 cut(s)	131, 153, 211, 315, 572, 629, 1051
HpyCH4IV	ACGT	2 cut(s)	712, 762
HpyCH4V	TGCA	9 cut(s)	43, 263, 287, 296, 734, 766, 876, 1024, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	3 cut(s)	144, 693, 889
HpySE526I	ACGT	2 cut(s)	712, 762
HspAI	GCGC	2 cut(s)	8, 925
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	7 cut(s)	118, 420, 547, 565, 616, 661, 703
LmnI	GCTCC	2 cut(s)	698, 827
Lsp1109I	GCAGC	2 cut(s)	275, 299
LweI	GCATC	7 cut(s)	130, 167, 250, 329, 912, 961, 1084
MaeI	CTAG	2 cut(s)	960, 1115
MaeII	ACGT	2 cut(s)	712, 762
MaeIII	GTNAC	4 cut(s)	542, 608, 791, 1162
MalI	GATC	7 cut(s)	120, 422, 549, 567, 618, 663, 705
MboI	GATC	7 cut(s)	118, 420, 547, 565, 616, 661, 703
MboII	GAAGA	3 cut(s)	352, 770, 868
MflI	RGATCY	3 cut(s)	118, 420, 703
MhlI	GDGCHC	3 cut(s)	192, 684, 956
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	4 cut(s)	297, 366, 894, 966
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	2 cut(s)	74, 441
MnlI	CCTC	7 cut(s)	325, 688, 806, 931, 983, 1003, 1134
Mox20I	TGGCCA	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	2 cut(s)	516, 1086
MslI	CAYNNNNRTG	9 cut(s)	48, 209, 325, 398, 561, 573, 618, 663, 669
Msp20I	TGGCCA	1 cut(s)	579
MspI	CCGG	2 cut(s)	462, 1091
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	7 cut(s)	118, 420, 547, 565, 616, 661, 703
NlaIV	GGNNCC	1 cut(s)	422
NmuCI	GTSAC	3 cut(s)	542, 608, 791
NsbI	TGCGCA	1 cut(s)	926
PagI	TCATGA	2 cut(s)	204, 664
PinAI	ACCGGT	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	265, 289
PleI	GAGTC	2 cut(s)	73, 441
PpsI	GAGTC	2 cut(s)	73, 441
PspEI	GGTNACC	1 cut(s)	791
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	1041
PstNI	CAGNNNCTG	1 cut(s)	1103
PsuI	RGATCY	3 cut(s)	118, 420, 703
RsaI	GTAC	5 cut(s)	94, 382, 786, 842, 1113
RsaNI	GTAC	5 cut(s)	93, 381, 785, 841, 1112
RseI	CAYNNNNRTG	9 cut(s)	48, 209, 325, 398, 561, 573, 618, 663, 669
SaqAI	TTAA	2 cut(s)	516, 1086
SatI	GCNGC	2 cut(s)	264, 288
Sau3AI	GATC	7 cut(s)	118, 420, 547, 565, 616, 661, 703
Sau96I	GGNCC	1 cut(s)	1041
SchI	GAGTC	2 cut(s)	74, 441
SduI	GDGCHC	3 cut(s)	192, 684, 956
SfaNI	GCATC	7 cut(s)	130, 167, 250, 329, 912, 961, 1084
SmiMI	CAYNNNNRTG	9 cut(s)	48, 209, 325, 398, 561, 573, 618, 663, 669
SmlI	CTYRAG	1 cut(s)	983
SmoI	CTYRAG	1 cut(s)	983
Sse9I	AATT	4 cut(s)	297, 366, 894, 966
SsiI	CCGC	1 cut(s)	166
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	960, 1115
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	7 cut(s)	131, 153, 211, 315, 572, 629, 1051
TaiI	ACGT	2 cut(s)	715, 765
TasI	AATT	4 cut(s)	297, 366, 894, 966
TatI	WGTACW	2 cut(s)	92, 784
Tru1I	TTAA	2 cut(s)	516, 1086
Tru9I	TTAA	2 cut(s)	516, 1086
TscAI	CASTG	6 cut(s)	318, 634, 652, 723, 730, 1026
TseFI	GTSAC	3 cut(s)	542, 608, 791
TseI	GCWGC	2 cut(s)	263, 287
Tsp45I	GTSAC	3 cut(s)	542, 608, 791
TspDTI	ATGAA	4 cut(s)	193, 681, 770, 1041
TspRI	CASTG	6 cut(s)	318, 634, 652, 723, 730, 1026
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	2 cut(s)	960, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.