Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003515

Physical Location & Seq

Genomic Coordinates Forward (+)

54445604 .. 54445957

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGAAGTAGGGAATCATTCCGGGTCTGCAAATACTACAGAAATTGAAATGGTTGAAGATCGGGAACGAGATCCGGAGACAAACAGGGTGGTGTCACGTAGTTGTGGGGAAGGACCATGTCAAGCGTTAACTTCCAACTATGGAGAGGCATCCAAGAGAAACCTGATGATAGCCCTCGTAGCCTCAGTCATTTTCATGACAGTGGAAATTGTTGTAGGCATCAAAGCCAATAGTTTGGCAATTCAGTCCAATGCGCTACATGTCTTAACAGATGTTGTGGCATTTGCAATTTCTGTGTTCTCAGTTTGCGCATCGGGTGGAAGGCAACTCCTGGCAAGACTTATGGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042592 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

117

Amino Acids

12.41

Weight (kDa)

5.28

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	55 - 105	1e-06	Cation efflux transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58810 AT3G58810
fragaria_vesca	FvH4_5g10450 FvH4_5g10450 FvH4_5g10450
malus_domestica	MD06G1123800.v1.1 MD13G1032200.v1.1 MD14G1140000.v1.1 MD14G1140800.v1.1
prunus_persica	Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1 Prupe.5G134300_v2.0.a1
pyrus_communis	pycom14g11570
rosa_chinensis	RchiOBHm_Chr4g0431771 RchiOBHm_Chr7g0187761
rosa_laevigata	RLG00000004758 RLG00000006891
rosa_multiflora	Rmu_sc0001459.1_g000019 Rmu_sc0004483.1_g000029
rosa_roxburghii	Rroxscaffold_3G00267100 Rroxscaffold_5G00373170 Rroxscaffold_5G00373180
rosa_rugosa	Rorug04G0252300 Rorug06G0484000.1
rosa_samantha	Rh4AG308700 Rh4BG316500 Rh4CG331900 Rh4DG311400 Rh7AG089100 Rh7BG090900 Rh7CG089900 Rh7DG091500
rosa_wichuraiana	Rw0G003020 Rw4G026780 Rw7G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	310
AccIII	TCCGGA	1 cut(s)	73
AclWI	GGATC	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	47, 56
AjnI	CCWGG	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	65
Aor13HI	TCCGGA	1 cut(s)	73
AspLEI	GCGC	2 cut(s)	256, 311
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	332
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	22, 332
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmrFI	CCNGG	2 cut(s)	22, 332
BmsI	GCATC	3 cut(s)	158, 228, 320
BpuMI	CCSGG	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	73
BseAI	TCCGGA	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	332
BseGI	GGATG	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	198, 315
BsiSI	CCGG	2 cut(s)	21, 74
BsmAI	GTCTC	1 cut(s)	71
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	58, 70
BspCNI	CTCAG	2 cut(s)	197, 314
BspEI	TCCGGA	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	195
BspPI	GGATC	1 cut(s)	65
BssMI	GATC	2 cut(s)	58, 70
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	184, 301
BstF5I	GGATG	1 cut(s)	149
BstHHI	GCGC	2 cut(s)	256, 311
BstKTI	GATC	2 cut(s)	61, 73
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	58, 70
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	20, 330
BstSFI	CTRYAG	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	207
CciI	TCATGA	1 cut(s)	195
CfoI	GCGC	2 cut(s)	256, 311
Cfr13I	GGNCC	1 cut(s)	113
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	3 cut(s)	117, 196, 260
CviJI	RGCY	4 cut(s)	173, 182, 227, 347
CviKI_1	RGCY	4 cut(s)	173, 182, 227, 347
DdeI	CTNAG	2 cut(s)	184, 301
DpnI	GATC	2 cut(s)	60, 72
DpnII	GATC	2 cut(s)	58, 70
Eco47I	GGWCC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	120, 199, 263
FaiI	YATR	5 cut(s)	118, 141, 197, 261, 344
FatI	CATG	3 cut(s)	116, 195, 259
FokI	GGATG	1 cut(s)	136
FspI	TGCGCA	1 cut(s)	310
GlaI	GCGC	2 cut(s)	255, 310
HapII	CCGG	2 cut(s)	21, 74
HhaI	GCGC	2 cut(s)	256, 311
Hin1II	CATG	3 cut(s)	120, 199, 263
Hin6I	GCGC	2 cut(s)	254, 309
HinP1I	GCGC	2 cut(s)	254, 309
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	13
HpaI	GTTAAC	1 cut(s)	129
HpaII	CCGG	2 cut(s)	21, 74
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188III	TCNNGA	3 cut(s)	62, 74, 196
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	2 cut(s)	104, 315
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	29, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	184, 301
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	3 cut(s)	120, 199, 263
HspAI	GCGC	2 cut(s)	254, 309
Kpn2I	TCCGGA	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	58, 70
LpnPI	CCDG	6 cut(s)	34, 70, 87, 176, 317, 344
LweI	GCATC	3 cut(s)	158, 228, 320
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	2 cut(s)	60, 72
MboI	GATC	2 cut(s)	58, 70
MboII	GAAGA	1 cut(s)	68
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	4 cut(s)	42, 207, 240, 288
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	3 cut(s)	139, 185, 193
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	3 cut(s)	128, 266, 352
MslI	CAYNNNNRTG	2 cut(s)	194, 200
MspI	CCGG	2 cut(s)	21, 74
MspR9I	CCNGG	2 cut(s)	22, 332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	58, 70
NlaIII	CATG	3 cut(s)	120, 199, 263
NmuCI	GTSAC	1 cut(s)	93
NsbI	TGCGCA	1 cut(s)	310
NspI	RCATGY	1 cut(s)	263
PagI	TCATGA	1 cut(s)	195
PciI	ACATGT	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	117
Ppu21I	YACGTR	1 cut(s)	98
PscI	ACATGT	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	117
RseI	CAYNNNNRTG	2 cut(s)	194, 200
SaqAI	TTAA	3 cut(s)	128, 266, 352
Sau3AI	GATC	2 cut(s)	58, 70
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	22, 332
SetI	ASST	2 cut(s)	100, 165
SfaNI	GCATC	3 cut(s)	158, 228, 320
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	2 cut(s)	194, 200
Sse9I	AATT	4 cut(s)	42, 207, 240, 288
StyD4I	CCNGG	2 cut(s)	20, 330
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	100
TasI	AATT	4 cut(s)	42, 207, 240, 288
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	3 cut(s)	128, 266, 352
Tru9I	TTAA	3 cut(s)	128, 266, 352
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	113
XceI	RCATGY	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.