AT3G59090

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001716
Physical Location & Seq
Forward (+)
21839143 .. 21842781
3639 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59090.1

Sequence Viewer

Length: 1104 bp
ATGAAGATCTTAGCGACTCTTTTCGAATCAACCAAGGATAAATGCTATGCTCCTAGCTTCATCGCCGTCAATCTCTGTTTGGCTTTTATCGATGCCGCTCTTGCTTTCATCGCATTCCTTCAGTTATCTCGATTTCACAGGCGGAATAAACAAGTTGGATGGACTCGGCAAAAAGTACTTCATCTTATGATTGCTTCTTCAAACACTGGTTCTGTTATTTATTTCGTGGCTGCGGTTATAGCGACTTGCACAAGGTGGCATCATTGGTCCAACGCATTAGGTTTTCTACTCATGGCCTTTCCCAAAATTCTGTTTCTGGCAACTTTTCTCCTGCTTCTCTCTTTCTGGGTAGATGTTTGCCATCAGGGAAATGGAGAGGAGGATGATGATGATGATGAAGAAAATAGCATCCAACAAGTGTTGCTTGAAAAAAGCAAGAGCAAGCCAGGTTCTTCGAATGCAAGTGATCGTAGAAAGTGTTGCTCTTTCCATGGTATTCATGTTGGAACCCGGCAGAAGTTTGTTGTTGCGGCAATTATTCTTGTGTTCATCTTAATGATATCATTTGCAATCCTTATCTGGATCGCTTCCGGAAAGAATCCTATGAATTCTTCATTATTGGCTGAGGTGTATGTCGATATTTTTGCTGCAATAATCCTAATCACTGGAGGAGGAATCTGCTTCTATGGCCTGCGTCTGCTCTTTAATCTAAGAAAGGTGCGGTCTGAACAAGTTTCATCAGAGATGCGAAAGGTATCGGGTCTAGCAGGAGTCTCAGTTGTTTGCTTCACTGTTAGCTCTTTAATCGCTCTTCTCACACACATTCCACTCTTTTATCATTGGAACCCAAGCAAATTACACGGCATCAAAGCATTGGTTCTTCTGATCATATACTATTTCATAGGTTCCACCGTCCCATTGGCTTTCGTTTTATGGGTTTTGCGGGAGTTACCCCCTCAAAACATTGTGAGTAGGCAAGAAGACACCAGAAGGATTACTTATGTCAACTATGAAACTGTTCCAAGGCAACCTCAAGGTCCTCAACAAGACTGGGCCTCCGCCACAGTGTCGAAAAATCAGGTGTCTAAAGCAAGTCCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1084

Protein Analysis

367

Amino Acids

41.12

Weight (kDa)

9.31

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THH1_TOM1-3_dom PF06454 23 - 124 2.2e-13 THH1/TOM1/TOM3 domain
THH1_TOM1-3_dom PF06454 179 - 325 5.2e-13 THH1/TOM1/TOM3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 98
AccIII TCCGGA 1 cut(s) 590
AciI CCGC 7 cut(s) 96, 142, 233, 530, 721, 943, 1059
AclWI GGATC 1 cut(s) 590
AcsI RAATTY 2 cut(s) 306, 607
AcuI CTGAAG 1 cut(s) 104
AdeI CACNNNGTG 1 cut(s) 255
AfaI GTAC 1 cut(s) 177
AgsI TTSAA 2 cut(s) 201, 428
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 2 cut(s) 57, 798
AluI AGCT 2 cut(s) 57, 798
Alw26I GTCTC 1 cut(s) 778
AlwI GGATC 1 cut(s) 590
Aor13HI TCCGGA 1 cut(s) 590
AoxI GGCC 3 cut(s) 294, 688, 1053
ApeKI GCWGC 2 cut(s) 230, 647
ApoI RAATTY 2 cut(s) 306, 607
Asp700I GAANNNNTTC 1 cut(s) 1017
AspS9I GGNCC 3 cut(s) 267, 1037, 1053
AsuC2I CCSGG 1 cut(s) 511
AsuII TTCGAA 2 cut(s) 24, 455
AvaII GGWCC 2 cut(s) 267, 1037
BbsI GAAGAC 1 cut(s) 987
BbvCI CCTCAGC 1 cut(s) 624
BbvI GCAGC 2 cut(s) 217, 634
BccI CCATC 2 cut(s) 153, 369
BceAI ACGGC 2 cut(s) 50, 877
BcgI CGANNNNNNTGC 2 cut(s) 626, 660
BciT130I CCWGG 1 cut(s) 447
BclI TGATCA 1 cut(s) 885
BcnI CCSGG 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 778
BfaI CTAG 2 cut(s) 54, 764
BglII AGATCT 1 cut(s) 6
BisI GCNGC 4 cut(s) 96, 231, 531, 648
BlsI GCNGC 4 cut(s) 97, 232, 532, 649
BmcAI AGTACT 1 cut(s) 177
Bme1390I CCNGG 2 cut(s) 447, 511
Bme18I GGWCC 2 cut(s) 267, 1037
BmgT120I GGNCC 3 cut(s) 267, 1037, 1053
BmiI GGNNCC 3 cut(s) 508, 845, 907
BmrFI CCNGG 2 cut(s) 447, 511
BmrI ACTGGG 1 cut(s) 1060
BmsI GCATC 5 cut(s) 82, 268, 417, 735, 873
BmuI ACTGGG 1 cut(s) 1060
BpiI GAAGAC 1 cut(s) 987
BpmI CTGGAG 1 cut(s) 687
Bpu10I CCTNAGC 1 cut(s) 624
Bpu14I TTCGAA 2 cut(s) 24, 455
BpuEI CTTGAG 1 cut(s) 1017
BpuMI CCSGG 1 cut(s) 511
Bsa29I ATCGAT 1 cut(s) 90
BsaJI CCNNGG 3 cut(s) 33, 490, 1022
BsaWI WCCGGW 1 cut(s) 590
BsaXI ACNNNNNCTCC 4 cut(s) 762, 792, 1040, 1070
Bse1I ACTGG 3 cut(s) 211, 670, 1055
BseAI TCCGGA 1 cut(s) 590
BseBI CCWGG 1 cut(s) 447
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 33, 490, 1022
BseGI GGATG 3 cut(s) 164, 388, 408
BseMII CTCAG 2 cut(s) 615, 789
BseNI ACTGG 3 cut(s) 211, 670, 1055
BseRI GAGGAG 2 cut(s) 392, 684
BseXI GCAGC 2 cut(s) 217, 634
BshFI GGCC 3 cut(s) 296, 690, 1055
BshVI ATCGAT 1 cut(s) 90
BsiSI CCGG 2 cut(s) 511, 591
BslFI GGGAC 1 cut(s) 899
BsmAI GTCTC 1 cut(s) 778
BsmFI GGGAC 1 cut(s) 899
BsmI GAATGC 2 cut(s) 113, 463
BsnI GGCC 3 cut(s) 296, 690, 1055
Bsp119I TTCGAA 2 cut(s) 24, 455
Bsp13I TCCGGA 1 cut(s) 590
Bsp143I GATC 4 cut(s) 6, 466, 582, 885
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 7 cut(s) 96, 142, 233, 530, 721, 943, 1059
BspANI GGCC 3 cut(s) 296, 690, 1055
BspCNI CTCAG 2 cut(s) 616, 788
BspDI ATCGAT 1 cut(s) 90
BspEI TCCGGA 1 cut(s) 590
BspLI GGNNCC 3 cut(s) 508, 845, 907
BspPI GGATC 1 cut(s) 590
BspQI GCTCTTC 1 cut(s) 816
BspT104I TTCGAA 2 cut(s) 24, 455
BsrBI CCGCTC 1 cut(s) 98
BsrI ACTGG 3 cut(s) 211, 670, 1055
BssECI CCNNGG 3 cut(s) 33, 490, 1022
BssMI GATC 4 cut(s) 6, 466, 582, 885
BssT1I CCWWGG 3 cut(s) 33, 490, 1022
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 4 cut(s) 793, 913, 1018, 1066
Bst6I CTCTTC 1 cut(s) 816
BstBI TTCGAA 2 cut(s) 24, 455
BstC8I GCNNGC 2 cut(s) 443, 692
BstDEI CTNAG 4 cut(s) 10, 624, 710, 775
BstDSI CCRYGG 1 cut(s) 490
BstF5I GGATG 3 cut(s) 164, 388, 408
BstKTI GATC 4 cut(s) 9, 469, 585, 888
BstMAI GTCTC 1 cut(s) 778
BstMBI GATC 4 cut(s) 6, 466, 582, 885
BstMWI GCNNNNNNNGC 4 cut(s) 101, 110, 239, 687
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 2 cut(s) 445, 509
BstV1I GCAGC 2 cut(s) 217, 634
BstV2I GAAGAC 1 cut(s) 987
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 3 cut(s) 296, 690, 1055
BsuTUI ATCGAT 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 490
BtgZI GCGATG 2 cut(s) 46, 94
BtsCI GGATG 3 cut(s) 164, 388, 408
BtsIMutI CAGTG 4 cut(s) 204, 663, 789, 1071
Cac8I GCNNGC 2 cut(s) 443, 692
Cfr13I GGNCC 3 cut(s) 267, 1037, 1053
ClaI ATCGAT 1 cut(s) 90
CseI GACGC 1 cut(s) 683
Csp6I GTAC 1 cut(s) 176
CviAII CATG 3 cut(s) 292, 491, 500
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 4 cut(s) 10, 624, 710, 775
DpnI GATC 4 cut(s) 8, 468, 584, 887
DpnII GATC 4 cut(s) 6, 466, 582, 885
DraIII CACNNNGTG 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 816
EciI GGCGGA 2 cut(s) 157, 1048
Eco130I CCWWGG 3 cut(s) 33, 490, 1022
Eco32I GATATC 1 cut(s) 561
Eco47I GGWCC 2 cut(s) 267, 1037
Eco57I CTGAAG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 1037
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 445
EcoRV GATATC 1 cut(s) 561
EcoT14I CCWWGG 3 cut(s) 33, 490, 1022
ErhI CCWWGG 3 cut(s) 33, 490, 1022
FaeI CATG 3 cut(s) 295, 494, 503
FalI AAGNNNNNCTT 4 cut(s) 408, 440, 982, 1014
FaqI GGGAC 1 cut(s) 899
FatI CATG 3 cut(s) 291, 490, 499
FauI CCCGC 1 cut(s) 936
FbaI TGATCA 1 cut(s) 885
Fnu4HI GCNGC 4 cut(s) 96, 231, 531, 648
FokI GGATG 3 cut(s) 171, 395, 395
Fsp4HI GCNGC 4 cut(s) 96, 231, 531, 648
FspBI CTAG 2 cut(s) 54, 764
GluI GCNGC 4 cut(s) 96, 231, 531, 648
GsuI CTGGAG 1 cut(s) 687
HaeIII GGCC 3 cut(s) 296, 690, 1055
HapII CCGG 2 cut(s) 511, 591
HgaI GACGC 1 cut(s) 683
Hin1II CATG 3 cut(s) 295, 494, 503
HincII GTYRAC 1 cut(s) 1006
HindII GTYRAC 1 cut(s) 1006
HinfI GANTC 6 cut(s) 16, 26, 163, 598, 675, 771
HpaII CCGG 2 cut(s) 511, 591
Hpy166II GTNNAC 1 cut(s) 1006
Hpy188I TCNGA 3 cut(s) 727, 742, 885
Hpy188III TCNNGA 3 cut(s) 129, 580, 591
Hpy8I GTNNAC 1 cut(s) 1006
HpyAV CCTTC 2 cut(s) 128, 984
HpyCH4III ACNGT 4 cut(s) 793, 913, 1018, 1066
HpyCH4V TGCA 4 cut(s) 249, 461, 569, 650
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 110, 239, 687
HpyF3I CTNAG 4 cut(s) 10, 624, 710, 775
Hsp92II CATG 3 cut(s) 295, 494, 503
Kpn2I TCCGGA 1 cut(s) 590
Ksp22I TGATCA 1 cut(s) 885
Kzo9I GATC 4 cut(s) 6, 466, 582, 885
LguI GCTCTTC 1 cut(s) 816
LmnI GCTCC 1 cut(s) 55
Lsp1109I GCAGC 2 cut(s) 217, 634
LweI GCATC 5 cut(s) 82, 268, 417, 735, 873
MaeI CTAG 2 cut(s) 54, 764
MaeIII GTNAC 1 cut(s) 948
MalI GATC 4 cut(s) 8, 468, 584, 887
MbiI CCGCTC 1 cut(s) 98
MboI GATC 4 cut(s) 6, 466, 582, 885
MboII GAAGA 8 cut(s) 16, 189, 410, 444, 603, 803, 872, 992
MflI RGATCY 1 cut(s) 6
MluCI AATT 4 cut(s) 306, 534, 607, 854
MlyI GAGTC 3 cut(s) 10, 157, 780
MmeI TCCRAC 4 cut(s) 136, 294, 436, 484
MnlI CCTC 9 cut(s) 370, 373, 619, 662, 665, 966, 1041, 1050, 1066
MroI TCCGGA 1 cut(s) 590
MroXI GAANNNNTTC 1 cut(s) 1017
MseI TTAA 3 cut(s) 554, 705, 803
MslI CAYNNNNRTG 1 cut(s) 554
MspI CCGG 2 cut(s) 511, 591
MspR9I CCNGG 2 cut(s) 447, 511
Mva1269I GAATGC 2 cut(s) 113, 463
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 4 cut(s) 101, 110, 239, 687
NciI CCSGG 1 cut(s) 511
NcoI CCATGG 1 cut(s) 490
NdeII GATC 4 cut(s) 6, 466, 582, 885
NlaIII CATG 3 cut(s) 295, 494, 503
NlaIV GGNNCC 3 cut(s) 508, 845, 907
NmeAIII GCCGAG 1 cut(s) 145
NspV TTCGAA 2 cut(s) 24, 455
PciSI GCTCTTC 1 cut(s) 816
PctI GAATGC 2 cut(s) 113, 463
PdmI GAANNNNTTC 1 cut(s) 1017
PfeI GAWTC 3 cut(s) 26, 598, 675
PkrI GCNGC 4 cut(s) 97, 232, 532, 649
PleI GAGTC 3 cut(s) 10, 157, 779
PpsI GAGTC 3 cut(s) 10, 157, 779
PpuMI RGGWCCY 1 cut(s) 1037
Psp5II RGGWCCY 1 cut(s) 1037
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 3 cut(s) 508, 845, 907
PspPI GGNCC 3 cut(s) 267, 1037, 1053
PspPPI RGGWCCY 1 cut(s) 1037
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 554
SapI GCTCTTC 1 cut(s) 816
SaqAI TTAA 3 cut(s) 554, 705, 803
SatI GCNGC 4 cut(s) 96, 231, 531, 648
Sau3AI GATC 4 cut(s) 6, 466, 582, 885
Sau96I GGNCC 3 cut(s) 267, 1037, 1053
ScaI AGTACT 1 cut(s) 177
SchI GAGTC 3 cut(s) 10, 157, 780
ScrFI CCNGG 2 cut(s) 447, 511
SfaNI GCATC 5 cut(s) 82, 268, 417, 735, 873
SfuI TTCGAA 2 cut(s) 24, 455
SinI GGWCC 2 cut(s) 267, 1037
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 1 cut(s) 1032
SmoI CTYRAG 1 cut(s) 1032
Sse9I AATT 4 cut(s) 306, 534, 607, 854
SsiI CCGC 7 cut(s) 96, 142, 233, 530, 721, 943, 1059
SspMI CTAG 2 cut(s) 54, 764
StyD4I CCNGG 2 cut(s) 445, 509
StyI CCWWGG 3 cut(s) 33, 490, 1022
TaaI ACNGT 4 cut(s) 793, 913, 1018, 1066
TaqI TCGA 6 cut(s) 24, 90, 130, 455, 636, 1070
TasI AATT 4 cut(s) 306, 534, 607, 854
TatI WGTACW 1 cut(s) 175
TauI GCSGC 2 cut(s) 98, 533
TfiI GAWTC 3 cut(s) 26, 598, 675
Tru1I TTAA 3 cut(s) 554, 705, 803
Tru9I TTAA 3 cut(s) 554, 705, 803
TscAI CASTG 4 cut(s) 211, 670, 796, 1071
TseI GCWGC 2 cut(s) 230, 647
TspRI CASTG 4 cut(s) 211, 670, 796, 1071
VpaK11BI GGWCC 2 cut(s) 267, 1037
XapI RAATTY 2 cut(s) 306, 607
XcmI CCANNNNNNNNNTGG 2 cut(s) 368, 916
XmnI GAANNNNTTC 1 cut(s) 1017
XspI CTAG 2 cut(s) 54, 764
ZrmI AGTACT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.