Rh5AG105100

Tobamovirus multiplication protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001716
Physical Location & Seq
Reverse (-)
9636876 .. 9644366
7491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG105100.1

Sequence Viewer

Length: 807 bp
ATGGCTTTACCCAAAATTTTGTTTTTTGCTGCATTCCTTCTACTTTTATCGTTCTGGGTTGACCTGTGCCATCAGGCAGATGACGAAGATGAGGAGGATGAAGGTAGTTTTCAGGAAGCTTTGTTGGAGAAGACATTTAGCAAAACTAATTCATTGGACACTGATAGTCATAGAAGGTGTTTTCCTCTGCGAATCCATATTGGAAGCCGCCAGAAAATTGTAGTTTTGGTTACTGTGCTAGTTTTTATTATAATGATCGTATGTGCTGTGATAATCTGGATCGGGATGGGAAAAAATCCCATTGATTCTACTGTGGTAGCTCGGGTATATGTAGATCTTTTTGCAATAGTAACACTATTATTGGGAGGAGCATTGGCATGTTATGGACTTCTATTATGCTTGAGAATGAGAAAAGTTAGGTCTGAGAGAGCCTCTTCTGAGATGTGGAAGGTTGCAGGTTTAGCTGTCGTTTCCGTTCTATGTTTCGCCTCAAGTGCTTTCGTGGCTCTATTAACTGATATTCCTATGCTTTACCATGACTATCAACAGCCTGTGAATGGTGTTTATACTGCGCTTTTGCTGATTTTATATTATTTTGTAGGTTCATCAATACCCTCAGCGTATGTATTATGGGTCATGAGAGAATTACCATCCTCAATAGCAGCTAACATACGACAACAAGAAGAAGAATCAACTACATTAACATTCATCAGTGATGATTCTAACGTATTACCACATCCTCAGAGCTGGACTGCAGCAATGAGCTCGCGGAGCCAGGTGCAGGTATCAAGAGTAAGTCCGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1084

Protein Analysis

268

Amino Acids

29.9

Weight (kDa)

5.53

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THH1_TOM1-3_dom PF06454 79 - 221 8.2e-09 THH1/TOM1/TOM3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
Acc36I ACCTGC 2 cut(s) 446, 772
AccII CGCG 1 cut(s) 769
AciI CCGC 2 cut(s) 208, 769
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 15
AfiI CCNNNNNNNGG 2 cut(s) 557, 781
AjnI CCWGG 1 cut(s) 774
AluBI AGCT 6 cut(s) 119, 320, 464, 665, 747, 765
AluI AGCT 6 cut(s) 119, 320, 464, 665, 747, 765
Alw21I GWGCWC 1 cut(s) 767
AlwI GGATC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 321
ApeKI GCWGC 3 cut(s) 29, 662, 755
ApoI RAATTY 1 cut(s) 15
AspLEI GCGC 1 cut(s) 574
AvaI CYCGRG 1 cut(s) 321
BanII GRGCYC 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 767
BbvCI CCTCAGC 1 cut(s) 616
BbvI GCAGC 3 cut(s) 16, 674, 767
BccI CCATC 3 cut(s) 78, 280, 658
BcgI CGANNNNNNTGC 2 cut(s) 747, 781
BciT130I CCWGG 1 cut(s) 776
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 753
BfuAI ACCTGC 2 cut(s) 446, 772
BglII AGATCT 1 cut(s) 334
BisI GCNGC 4 cut(s) 30, 208, 663, 756
BlsI GCNGC 4 cut(s) 31, 209, 664, 757
Bme1390I CCNGG 1 cut(s) 776
BmeT110I CYCGRG 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 773
BmrFI CCNGG 1 cut(s) 776
BpiI GAAGAC 1 cut(s) 137
BplI GAGNNNNNCTC 2 cut(s) 416, 448
Bpu10I CCTNAGC 1 cut(s) 616
BpuEI CTTGAG 2 cut(s) 421, 475
Bsc4I CCNNNNNNNGG 2 cut(s) 557, 781
Bse3DI GCAATG 1 cut(s) 765
BseBI CCWGG 1 cut(s) 776
BseGI GGATG 4 cut(s) 103, 291, 650, 736
BseLI CCNNNNNNNGG 2 cut(s) 557, 781
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 4 cut(s) 414, 429, 630, 755
BseRI GAGGAG 2 cut(s) 107, 381
BseXI GCAGC 3 cut(s) 16, 674, 767
BsgI GTGCAG 1 cut(s) 800
Bsh1236I CGCG 1 cut(s) 769
BsiHKAI GWGCWC 1 cut(s) 767
BsiHKCI CYCGRG 1 cut(s) 321
BslI CCNNNNNNNGG 2 cut(s) 557, 781
BsmI GAATGC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 767
Bsp143I GATC 3 cut(s) 255, 279, 334
BspACI CCGC 2 cut(s) 208, 769
BspCNI CTCAG 4 cut(s) 415, 430, 629, 754
BspFNI CGCG 1 cut(s) 769
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 1 cut(s) 773
BspMAI CTGCAG 1 cut(s) 757
BspMI ACCTGC 2 cut(s) 446, 772
BspPI GGATC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 765
BssMI GATC 3 cut(s) 255, 279, 334
Bst2UI CCWGG 1 cut(s) 776
Bst4CI ACNGT 2 cut(s) 235, 313
Bst6I CTCTTC 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 767
BstDEI CTNAG 4 cut(s) 423, 438, 616, 741
BstF5I GGATG 4 cut(s) 103, 291, 650, 736
BstFNI CGCG 1 cut(s) 769
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 3 cut(s) 258, 282, 337
BstMBI GATC 3 cut(s) 255, 279, 334
BstMWI GCNNNNNNNGC 4 cut(s) 461, 494, 503, 771
BstNI CCWGG 1 cut(s) 776
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 774
BstSFI CTRYAG 1 cut(s) 753
BstUI CGCG 1 cut(s) 769
BstV1I GCAGC 3 cut(s) 16, 674, 767
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BtsCI GGATG 4 cut(s) 103, 291, 650, 736
BtsIMutI CAGTG 2 cut(s) 159, 718
BveI ACCTGC 2 cut(s) 446, 772
Cac8I GCNNGC 1 cut(s) 767
CciI TCATGA 1 cut(s) 636
CfoI GCGC 1 cut(s) 574
CviAII CATG 3 cut(s) 378, 536, 637
DdeI CTNAG 4 cut(s) 423, 438, 616, 741
DpnI GATC 3 cut(s) 257, 281, 336
DpnII GATC 3 cut(s) 255, 279, 334
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Ecl136II GAGCTC 1 cut(s) 765
Eco24I GRGCYC 1 cut(s) 767
Eco53kI GAGCTC 1 cut(s) 765
Eco88I CYCGRG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 765
EcoRII CCWGG 1 cut(s) 774
EcoT38I GRGCYC 1 cut(s) 767
FaeI CATG 3 cut(s) 381, 539, 640
FatI CATG 3 cut(s) 377, 535, 636
Fnu4HI GCNGC 4 cut(s) 30, 208, 663, 756
FokI GGATG 4 cut(s) 110, 298, 637, 723
FriOI GRGCYC 1 cut(s) 767
Fsp4HI GCNGC 4 cut(s) 30, 208, 663, 756
FspBI CTAG 1 cut(s) 239
GlaI GCGC 1 cut(s) 573
GluI GCNGC 4 cut(s) 30, 208, 663, 756
HhaI GCGC 1 cut(s) 574
Hin1II CATG 3 cut(s) 381, 539, 640
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 4 cut(s) 192, 305, 689, 719
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 4 cut(s) 424, 439, 744, 801
Hpy188III TCNNGA 5 cut(s) 113, 277, 283, 637, 789
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 4 cut(s) 47, 95, 168, 442
HpyCH4III ACNGT 2 cut(s) 235, 313
HpyCH4IV ACGT 1 cut(s) 726
HpyCH4V TGCA 5 cut(s) 32, 344, 455, 755, 781
HpyF10VI GCNNNNNNNGC 4 cut(s) 461, 494, 503, 771
HpyF3I CTNAG 4 cut(s) 423, 438, 616, 741
HpySE526I ACGT 1 cut(s) 726
Hsp92II CATG 3 cut(s) 381, 539, 640
HspAI GCGC 1 cut(s) 572
Kzo9I GATC 3 cut(s) 255, 279, 334
LmnI GCTCC 2 cut(s) 368, 771
Lsp1109I GCAGC 3 cut(s) 16, 674, 767
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 726
MaeIII GTNAC 2 cut(s) 229, 349
MalI GATC 3 cut(s) 257, 281, 336
MboI GATC 3 cut(s) 255, 279, 334
MboII GAAGA 5 cut(s) 98, 142, 426, 695, 698
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 767
MluCI AATT 4 cut(s) 15, 148, 216, 644
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 9 cut(s) 85, 88, 195, 359, 442, 499, 625, 664, 750
MseI TTAA 2 cut(s) 512, 701
MslI CAYNNNNRTG 1 cut(s) 376
MspR9I CCNGG 1 cut(s) 776
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 1 cut(s) 776
MvnI CGCG 1 cut(s) 769
MwoI GCNNNNNNNGC 4 cut(s) 461, 494, 503, 771
NdeII GATC 3 cut(s) 255, 279, 334
NlaIII CATG 3 cut(s) 381, 539, 640
NlaIV GGNNCC 1 cut(s) 773
NspI RCATGY 1 cut(s) 381
PagI TCATGA 1 cut(s) 636
PctI GAATGC 1 cut(s) 32
PfeI GAWTC 4 cut(s) 192, 305, 689, 719
PkrI GCNGC 4 cut(s) 31, 209, 664, 757
PsiI TTATAA 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 767
Psp6I CCWGG 1 cut(s) 774
PspGI CCWGG 1 cut(s) 774
PspN4I GGNNCC 1 cut(s) 773
PstI CTGCAG 1 cut(s) 757
PsuI RGATCY 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 376
SacI GAGCTC 1 cut(s) 767
SaqAI TTAA 2 cut(s) 512, 701
SatI GCNGC 4 cut(s) 30, 208, 663, 756
Sau3AI GATC 3 cut(s) 255, 279, 334
ScrFI CCNGG 1 cut(s) 776
SduI GDGCHC 1 cut(s) 767
SfcI CTRYAG 1 cut(s) 753
SmiMI CAYNNNNRTG 1 cut(s) 376
SmlI CTYRAG 2 cut(s) 400, 490
SmoI CTYRAG 2 cut(s) 400, 490
Sse9I AATT 4 cut(s) 15, 148, 216, 644
SsiI CCGC 2 cut(s) 208, 769
SspMI CTAG 1 cut(s) 239
SstI GAGCTC 1 cut(s) 767
StyD4I CCNGG 1 cut(s) 774
TaaI ACNGT 2 cut(s) 235, 313
TaiI ACGT 1 cut(s) 729
TasI AATT 4 cut(s) 15, 148, 216, 644
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 4 cut(s) 192, 305, 689, 719
Tru1I TTAA 2 cut(s) 512, 701
Tru9I TTAA 2 cut(s) 512, 701
TscAI CASTG 2 cut(s) 166, 718
TseI GCWGC 3 cut(s) 29, 662, 755
TspDTI ATGAA 4 cut(s) 114, 141, 594, 697
TspGWI ACGGA 1 cut(s) 463
TspRI CASTG 2 cut(s) 166, 718
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 381
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.