Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Reverse (-)

64118560 .. 64122750

Gene Structure 4191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG475900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGATGTTGTTGGAATCAATACTGGAAAAAAGTCGTTGCTTTCGTTTGGACTTGCCGTTGCTAATCCTCAATATAGCTCTGGCCGTTTTCAATGGCGTTCTTGCTGCGATTGCGTTTTCTCAGCTGGTCAGGATTCACTTGCGCAATCAACAAATTGGATGGACACGCCAAAAAGTACTCCACCTCATGATTGGCTGTTCTAACTTGGGTTACTTCCTATATTTTACATCTACACTGATTGCCACTTTTAAGCAGTGGTTTTGCTGGTCTAATGTCTGCGGGTTCATTCTAATGGCCTACCCTAAAATTCTGTTGCTTGCAGCTTTTCTTCTAGTCCTATCCTTTTGGGTGGACCTTTGCCATCAGGCAAATGATGAAGAGGATGATGATGATGATGACAGTAGCATGCAGCATGCCTTGTTGGAAAATTCGAAGAATAAACACCGTTCATCAGTCACAAATGGTCATAGGATTTGTTGCTCATTCCCAAGCATTCATGTTGGAAGTCACCAGAAATTTGTGATTGCGGTTGTTGGGTTTGTCCTTATTTTGATGATGTCATTTTCTGTGGTAATCTGGATTGGTGCGGGGAAGAATCCCATTGATTCTTCAGCAGTGGCTGAGGTATATGAAGACCTTCTCGCCTTTGTAGTTCTTTTTTTAGGAGGAGGATTAGGTTGCTATGGCATTCTGCTACTTCGTAAGTTAAGGAAAGTACGGTCTGAGAAAGCTTCATCCGAAATGTGGAAGGTTGGCGGTTTAGCAGTTGCTTCTGTTGTATGTTTTACATCAAGTGCATTAGTAGCTCTTCTTACAGATATTCCGCTATATGAACCTTGGAGGCTGAAAAAAGCATATGGTGGGAAAGCGCTAGTTTTTCTGATGCTGTACTATTTTATAGGCTCTTGGGTACCCTCGGCTTTTGTATTATGGTTCATGAGAGAATTACCGCCACCAATCACTAATCGCCAACGGGAACAATCAAGAACAATTACTTTTATCAGCTATGCTGGAGTGGGCCGACAGCTTCCTCGTCACTGGGCTACAGTAACAAGTTCAAATAATCAGGCATCGCGAGCAAGCCCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

363

Amino Acids

40.75

Weight (kDa)

9.12

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	24 - 125	1.5e-11	THH1/TOM1/TOM3 domain
THH1_TOM1-3_dom	PF06454	184 - 325	1.7e-06	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	143
Acc65I	GGTACC	1 cut(s)	910
AccB1I	GGYRCC	1 cut(s)	910
AccII	CGCG	1 cut(s)	1075
AciI	CCGC	6 cut(s)	279, 527, 587, 756, 824, 950
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	3 cut(s)	306, 427, 515
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	4 cut(s)	177, 717, 890, 912
AfeI	AGCGCT	1 cut(s)	870
AfiI	CCNNNNNNNGG	1 cut(s)	744
AgsI	TTSAA	2 cut(s)	91, 1059
AluBI	AGCT	7 cut(s)	77, 124, 323, 731, 806, 1005, 1027
AluI	AGCT	7 cut(s)	77, 124, 323, 731, 806, 1005, 1027
AlwNI	CAGNNNCTG	1 cut(s)	620
Aor51HI	AGCGCT	1 cut(s)	870
AoxI	GGCC	3 cut(s)	81, 294, 1018
ApeKI	GCWGC	3 cut(s)	104, 320, 409
ApoI	RAATTY	3 cut(s)	306, 427, 515
Asp700I	GAANNNNTTC	1 cut(s)	636
Asp718I	GGTACC	1 cut(s)	910
AspLEI	GCGC	2 cut(s)	144, 871
AspS9I	GGNCC	2 cut(s)	352, 1018
AsuHPI	GGTGA	1 cut(s)	500
AsuII	TTCGAA	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	910
BbsI	GAAGAC	1 cut(s)	639
BbvCI	CCTCAGC	1 cut(s)	621
BbvI	GCAGC	3 cut(s)	91, 332, 421
BccI	CCATC	2 cut(s)	153, 369
BceAI	ACGGC	2 cut(s)	40, 68
BfaI	CTAG	2 cut(s)	332, 872
BfmI	CTRYAG	1 cut(s)	1044
BfoI	RGCGCY	1 cut(s)	872
BisI	GCNGC	3 cut(s)	105, 321, 410
BlsI	GCNGC	3 cut(s)	106, 322, 411
BmcAI	AGTACT	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	352, 1018
BmiI	GGNNCC	1 cut(s)	912
BmrI	ACTGGG	1 cut(s)	1048
BmsI	GCATC	2 cut(s)	873, 1079
BmuI	ACTGGG	1 cut(s)	1048
BpiI	GAAGAC	1 cut(s)	639
BpmI	CTGGAG	1 cut(s)	1032
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	836, 915
Bsc4I	CCNNNNNNNGG	1 cut(s)	744
Bse1I	ACTGG	2 cut(s)	27, 1043
BseDI	CCNNGG	2 cut(s)	836, 915
BseGI	GGATG	3 cut(s)	164, 388, 734
BseLI	CCNNNNNNNGG	1 cut(s)	744
BseMII	CTCAG	3 cut(s)	134, 612, 714
BseNI	ACTGG	2 cut(s)	27, 1043
BseRI	GAGGAG	1 cut(s)	681
BseXI	GCAGC	3 cut(s)	91, 332, 421
Bsh1236I	CGCG	1 cut(s)	1075
BshFI	GGCC	3 cut(s)	83, 296, 1020
BshNI	GGYRCC	1 cut(s)	910
BslI	CCNNNNNNNGG	1 cut(s)	744
BsmI	GAATGC	2 cut(s)	492, 687
BsnI	GGCC	3 cut(s)	83, 296, 1020
Bsp119I	TTCGAA	1 cut(s)	431
Bsp68I	TCGCGA	1 cut(s)	1075
BspACI	CCGC	6 cut(s)	279, 527, 587, 756, 824, 950
BspANI	GGCC	3 cut(s)	83, 296, 1020
BspCNI	CTCAG	3 cut(s)	133, 613, 715
BspFNI	CGCG	1 cut(s)	1075
BspHI	TCATGA	2 cut(s)	186, 936
BspLI	GGNNCC	1 cut(s)	912
BspQI	GCTCTTC	1 cut(s)	813
BspT104I	TTCGAA	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	910
BsrI	ACTGG	2 cut(s)	27, 1043
BssECI	CCNNGG	2 cut(s)	836, 915
BssT1I	CCWWGG	1 cut(s)	836
Bst4CI	ACNGT	4 cut(s)	401, 446, 720, 1048
Bst6I	CTCTTC	2 cut(s)	372, 813
BstBI	TTCGAA	1 cut(s)	431
BstC8I	GCNNGC	5 cut(s)	318, 407, 414, 1077, 1081
BstDEI	CTNAG	3 cut(s)	120, 621, 723
BstF5I	GGATG	3 cut(s)	164, 388, 734
BstFNI	CGCG	1 cut(s)	1075
BstH2I	RGCGCY	1 cut(s)	872
BstHHI	GCGC	2 cut(s)	144, 871
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 803, 1076
BstNSI	RCATGY	2 cut(s)	409, 416
BstSFI	CTRYAG	1 cut(s)	1044
BstUI	CGCG	1 cut(s)	1075
BstV1I	GCAGC	3 cut(s)	91, 332, 421
BstV2I	GAAGAC	1 cut(s)	639
BsuRI	GGCC	3 cut(s)	83, 296, 1020
BtgZI	GCGATG	1 cut(s)	1056
BtsCI	GGATG	3 cut(s)	164, 388, 734
BtsI	GCAGTG	2 cut(s)	260, 621
BtsIMutI	CAGTG	4 cut(s)	233, 260, 621, 1036
BtuMI	TCGCGA	1 cut(s)	1075
Cac8I	GCNNGC	5 cut(s)	318, 407, 414, 1077, 1081
CaiI	CAGNNNCTG	1 cut(s)	620
CciI	TCATGA	2 cut(s)	186, 936
CfoI	GCGC	2 cut(s)	144, 871
Cfr13I	GGNCC	2 cut(s)	352, 1018
Csp6I	GTAC	4 cut(s)	176, 716, 889, 911
CviAII	CATG	5 cut(s)	187, 406, 413, 497, 937
CviQI	GTAC	4 cut(s)	176, 716, 889, 911
DdeI	CTNAG	3 cut(s)	120, 621, 723
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	372, 813
EarI	CTCTTC	2 cut(s)	372, 813
Eco130I	CCWWGG	1 cut(s)	836
Eco47I	GGWCC	1 cut(s)	352
Eco47III	AGCGCT	1 cut(s)	870
Eco57I	CTGAAG	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	836
ErhI	CCWWGG	1 cut(s)	836
FaeI	CATG	5 cut(s)	190, 409, 416, 500, 940
FatI	CATG	5 cut(s)	186, 405, 412, 496, 936
FauI	CCCGC	2 cut(s)	272, 580
FauNDI	CATATG	1 cut(s)	856
Fnu4HI	GCNGC	3 cut(s)	105, 321, 410
FokI	GGATG	3 cut(s)	171, 395, 721
Fsp4HI	GCNGC	3 cut(s)	105, 321, 410
FspBI	CTAG	2 cut(s)	332, 872
FspI	TGCGCA	1 cut(s)	143
GlaI	GCGC	2 cut(s)	143, 870
GluI	GCNGC	3 cut(s)	105, 321, 410
GsuI	CTGGAG	1 cut(s)	1032
HaeII	RGCGCY	1 cut(s)	872
HaeIII	GGCC	3 cut(s)	83, 296, 1020
HhaI	GCGC	2 cut(s)	144, 871
Hin1II	CATG	5 cut(s)	190, 409, 416, 500, 940
Hin6I	GCGC	2 cut(s)	142, 869
HinP1I	GCGC	2 cut(s)	142, 869
HindIII	AAGCTT	1 cut(s)	729
HinfI	GANTC	4 cut(s)	14, 133, 595, 605
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	3 cut(s)	724, 739, 882
Hpy188III	TCNNGA	6 cut(s)	130, 187, 577, 937, 984, 1074
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	647, 742
HpyCH4III	ACNGT	4 cut(s)	401, 446, 720, 1048
HpyCH4V	TGCA	3 cut(s)	320, 409, 797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 803, 1076
HpyF3I	CTNAG	3 cut(s)	120, 621, 723
Hsp92II	CATG	5 cut(s)	190, 409, 416, 500, 940
HspAI	GCGC	2 cut(s)	142, 869
KpnI	GGTACC	1 cut(s)	914
LguI	GCTCTTC	1 cut(s)	813
Lsp1109I	GCAGC	3 cut(s)	91, 332, 421
LweI	GCATC	2 cut(s)	873, 1079
MaeI	CTAG	2 cut(s)	332, 872
MaeIII	GTNAC	5 cut(s)	209, 454, 506, 1034, 1048
MboII	GAAGA	7 cut(s)	320, 389, 445, 600, 604, 644, 800
MluCI	AATT	6 cut(s)	153, 306, 427, 515, 944, 990
MmeI	TCCRAC	2 cut(s)	402, 481
MnlI	CCTC	9 cut(s)	77, 194, 373, 616, 659, 662, 834, 925, 1041
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	3 cut(s)	249, 707, 1090
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	124
Mva1269I	GAATGC	2 cut(s)	492, 687
MvnI	CGCG	1 cut(s)	1075
MwoI	GCNNNNNNNGC	3 cut(s)	110, 803, 1076
NdeI	CATATG	1 cut(s)	856
NlaIII	CATG	5 cut(s)	190, 409, 416, 500, 940
NlaIV	GGNNCC	1 cut(s)	912
NmeAIII	GCCGAG	1 cut(s)	896
NmuCI	GTSAC	3 cut(s)	454, 506, 1034
NruI	TCGCGA	1 cut(s)	1075
NsbI	TGCGCA	1 cut(s)	143
NspI	RCATGY	2 cut(s)	409, 416
NspV	TTCGAA	1 cut(s)	431
PaeI	GCATGC	2 cut(s)	409, 416
PagI	TCATGA	2 cut(s)	186, 936
PciSI	GCTCTTC	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	2 cut(s)	492, 687
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	4 cut(s)	14, 133, 595, 605
PkrI	GCNGC	3 cut(s)	106, 322, 411
PspN4I	GGNNCC	1 cut(s)	912
PspPI	GGNCC	2 cut(s)	352, 1018
PstNI	CAGNNNCTG	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	124
RruI	TCGCGA	1 cut(s)	1075
RsaI	GTAC	4 cut(s)	177, 717, 890, 912
RsaNI	GTAC	4 cut(s)	176, 716, 889, 911
RseI	CAYNNNNRTG	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	3 cut(s)	249, 707, 1090
SatI	GCNGC	3 cut(s)	105, 321, 410
Sau96I	GGNCC	2 cut(s)	352, 1018
ScaI	AGTACT	1 cut(s)	177
SfaNI	GCATC	2 cut(s)	873, 1079
SfcI	CTRYAG	1 cut(s)	1044
SfuI	TTCGAA	1 cut(s)	431
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	290
SphI	GCATGC	2 cut(s)	409, 416
Sse9I	AATT	6 cut(s)	153, 306, 427, 515, 944, 990
SsiI	CCGC	6 cut(s)	279, 527, 587, 756, 824, 950
SspMI	CTAG	2 cut(s)	332, 872
StyI	CCWWGG	1 cut(s)	836
TaaI	ACNGT	4 cut(s)	401, 446, 720, 1048
TaqI	TCGA	1 cut(s)	431
TasI	AATT	6 cut(s)	153, 306, 427, 515, 944, 990
TatI	WGTACW	2 cut(s)	175, 888
TfiI	GAWTC	4 cut(s)	14, 133, 595, 605
Tru1I	TTAA	3 cut(s)	249, 707, 1090
Tru9I	TTAA	3 cut(s)	249, 707, 1090
TscAI	CASTG	4 cut(s)	240, 260, 621, 1043
TseFI	GTSAC	3 cut(s)	454, 506, 1034
TseI	GCWGC	3 cut(s)	104, 320, 409
Tsp45I	GTSAC	3 cut(s)	454, 506, 1034
TspDTI	ATGAA	8 cut(s)	274, 390, 438, 485, 645, 723, 846, 925
TspRI	CASTG	4 cut(s)	240, 260, 621, 1043
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	3 cut(s)	306, 427, 515
XceI	RCATGY	2 cut(s)	409, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	2 cut(s)	332, 872
ZrmI	AGTACT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.