Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Reverse (-)

621719 .. 622407

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0010100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTGATCGACGATGGGACAGAGGTAGTGAGAGAATCAGAGTGCCCTAACTGTAAAAGATTGTTCTGTGCGCAGTGTAAGGTTCCTTGGCACGCGGGGATTACTTGTGCCGAGGTTAAGAGGTTGAATAAGGATGATCTTATTATGGAGAAACTTGCTTACAAGAAGCACTGGAGAAAGTGCCCAACGTGTGGGATCTATGTGGAAAGATCAGGAGGCTGCACAACAATACCATGCAGGTGCGGGACTTATTTTGACTTCCATTGTGGACGACTCGGTTGTCCTTTTTGTGGAAAACGCAGAAAGAATACTATGGGCTACTGCGTATTCATGAAGGAATACAGAAGGATTCAGCGGGACCGGGGGGAACCCTATAGTCAAGCTACTGCTAAACTTGCTACTGAGAAATGGAGATCCATGTCTCGTTCTGAAAAAAAGCCCTATGAGAACCCAGAGATGAAACCGACTAGAATCATCCGGGTGCGATCGAAGATGTCGAGTAAAGAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

170

Amino Acids

19.8

Weight (kDa)

9.46

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	13 - 36	3.4e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	228
AasI	GACNNNNNNGTC	1 cut(s)	279
Acc16I	TGCGCA	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	228
AccB7I	CCANNNNNTGG	1 cut(s)	191
AccII	CGCG	1 cut(s)	95
AciI	CCGC	3 cut(s)	95, 243, 355
AclWI	GGATC	2 cut(s)	203, 408
AfiI	CCNNNNNNNGG	2 cut(s)	191, 290
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	1 cut(s)	383
AluI	AGCT	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	2 cut(s)	203, 408
ApeKI	GCWGC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	2 cut(s)	362, 479
AvaII	GGWCC	1 cut(s)	358
BaeGI	GKGCMC	2 cut(s)	47, 185
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	1 cut(s)	8
BcnI	CCSGG	2 cut(s)	362, 479
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	373
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	362, 479
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	3 cut(s)	84, 359, 369
BmrFI	CCNGG	2 cut(s)	362, 479
BpmI	CTGGAG	1 cut(s)	193
BpuMI	CCSGG	2 cut(s)	362, 479
BsaJI	CCNNGG	3 cut(s)	86, 111, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 290
Bse1I	ACTGG	1 cut(s)	176
BseDI	CCNNGG	3 cut(s)	86, 111, 361
BseGI	GGATG	2 cut(s)	139, 474
BseLI	CCNNNNNNNGG	2 cut(s)	191, 290
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	176
BseSI	GKGCMC	2 cut(s)	47, 185
BseXI	GCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	488
BsiEI	CGRYCG	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	361, 478
BslFI	GGGAC	3 cut(s)	31, 259, 371
BslI	CCNNNNNNNGG	2 cut(s)	191, 290
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	3 cut(s)	31, 259, 371
Bsp1286I	GDGCHC	2 cut(s)	47, 185
Bsp143I	GATC	6 cut(s)	6, 136, 195, 209, 413, 485
BspACI	CCGC	3 cut(s)	95, 243, 355
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	84, 359, 369
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	203, 408
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	86, 111, 361
BssMI	GATC	6 cut(s)	6, 136, 195, 209, 413, 485
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	139, 474
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	6 cut(s)	9, 139, 198, 212, 416, 488
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	6 cut(s)	6, 136, 195, 209, 413, 485
BstMCI	CGRYCG	1 cut(s)	488
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstSCI	CCNGG	2 cut(s)	360, 477
BstSFI	CTRYAG	1 cut(s)	373
BstSLI	GKGCMC	2 cut(s)	47, 185
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	2 cut(s)	195, 413
BstYI	RGATCY	2 cut(s)	195, 413
BtsCI	GGATG	2 cut(s)	139, 474
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 169
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	358
CviAII	CATG	3 cut(s)	234, 331, 418
CviJI	RGCY	5 cut(s)	219, 318, 383, 439, 510
CviKI_1	RGCY	5 cut(s)	219, 318, 383, 439, 510
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	6 cut(s)	8, 138, 197, 211, 415, 487
DpnII	GATC	6 cut(s)	6, 136, 195, 209, 413, 485
DrdI	GACNNNNNNGTC	1 cut(s)	279
DseDI	GACNNNNNNGTC	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	3 cut(s)	237, 334, 421
FaiI	YATR	8 cut(s)	146, 201, 235, 314, 332, 375, 419, 444
FaqI	GGGAC	3 cut(s)	31, 259, 371
FatI	CATG	3 cut(s)	233, 330, 417
FauI	CCCGC	3 cut(s)	88, 236, 348
Fnu4HI	GCNGC	1 cut(s)	220
FokI	GGATG	2 cut(s)	146, 461
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	1 cut(s)	468
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	193
HapII	CCGG	2 cut(s)	361, 478
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	237, 334, 421
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	4 cut(s)	35, 273, 349, 471
HpaII	CCGG	2 cut(s)	361, 478
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	2 cut(s)	40, 430
Hpy188III	TCNNGA	2 cut(s)	213, 331
Hpy8I	GTNNAC	1 cut(s)	269
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	328, 339, 500
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	222, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	3 cut(s)	237, 334, 421
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	6 cut(s)	6, 136, 195, 209, 413, 485
LpnPI	CCDG	6 cut(s)	157, 198, 223, 374, 465, 491
Lsp1109I	GCAGC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	188
MalI	GATC	6 cut(s)	8, 138, 197, 211, 415, 487
MboI	GATC	6 cut(s)	6, 136, 195, 209, 413, 485
MboII	GAAGA	1 cut(s)	502
MflI	RGATCY	2 cut(s)	195, 413
MhlI	GDGCHC	2 cut(s)	47, 185
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	4 cut(s)	16, 106, 114, 209
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	2 cut(s)	238, 479
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	2 cut(s)	361, 478
MspR9I	CCNGG	2 cut(s)	362, 479
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	395
NciI	CCSGG	2 cut(s)	362, 479
NdeII	GATC	6 cut(s)	6, 136, 195, 209, 413, 485
NlaIII	CATG	3 cut(s)	237, 334, 421
NlaIV	GGNNCC	3 cut(s)	84, 359, 369
NmeAIII	GCCGAG	1 cut(s)	136
NsbI	TGCGCA	1 cut(s)	72
PagI	TCATGA	1 cut(s)	330
PaqCI	CACCTGC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	494
PfeI	GAWTC	3 cut(s)	35, 349, 471
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	221
Ple19I	CGATCG	1 cut(s)	488
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	84, 359, 369
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	2 cut(s)	195, 413
PvuI	CGATCG	1 cut(s)	488
RseI	CAYNNNNRTG	2 cut(s)	238, 479
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	6 cut(s)	6, 136, 195, 209, 413, 485
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	362, 479
SduI	GDGCHC	2 cut(s)	47, 185
SetI	ASST	7 cut(s)	27, 84, 117, 125, 191, 242, 385
SfcI	CTRYAG	1 cut(s)	373
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	238, 479
SsiI	CCGC	3 cut(s)	95, 243, 355
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	2 cut(s)	360, 477
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	3 cut(s)	9, 488, 497
TfiI	GAWTC	3 cut(s)	35, 349, 471
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	80, 176
TseI	GCWGC	1 cut(s)	219
TspDTI	ATGAA	3 cut(s)	319, 347, 473
TspRI	CASTG	2 cut(s)	80, 176
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	358
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.