Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Reverse (-)

9154396 .. 9161890

Gene Structure 7495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG099900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCTTTACCCAAAATTTTGTTTTTTGCTGCATTCCTTCTACTTTTATCGTTCTGGGTTGACCTGTGCCATCAGGCAGATGACGAAGATGAGGAGGATGAAGGTAGTTTTCAGGAAGCTTTGTTGGAGAAGACATTTAGCAAAACTAATTCATTGGACACTGATAGTCATAGAAGGTGTTTTCCTCTGCGAATCCATATTGGAAGCCGCCAGAAAATTGTAGTTTTGGTTACTGTGCTAGTTTTTATTATAATGATCGTGTGTGCTGTGATAATCTGGATCGGGATGGGAAAAAATCCCATTGATTCTACTGTGGTAGCTCGGGTATATGTAGATCTTTTTGCAATAGTAACACTATTATTGGGAGGAGCATTGGCATGTTATGGACTTCTATTATGCTTGAGAATGAGAAAAGTTAGATCTGAGAGAGCCTCTTCTGAGATGTGGAAGGTTGCAGGTTTAGCTGTCGTTTCCGTTCTATGTTTCGCCTCAAGTGCTTTCGTGGCTCTATTAACTGATATTCCTATGCTTTACCATGACTATCAACAGCCTGTGAATGGTGTTTATACTGCACTTTTGCTGATTTTATATTATTTTGTAGGTTCATCAATACCCTCAGCGTATGTATTATGGGTCATGAGAGAATTACCATCCTCAATAGCAGCTAACATACGACAAGAAGAAGAAGAATCAACTACATTAACATTCATCAGTGATGATTCTAACGTATTACCACATCCTCAGAGCTGGACTGCAGCAATGAGCTCGCGGAGCCAGGTTTGGTTTCTTCCACTAACCATTCATTTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

270

Amino Acids

30.31

Weight (kDa)

5.34

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	79 - 220	1.1e-08	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
Acc36I	ACCTGC	1 cut(s)	446
AccII	CGCG	1 cut(s)	769
AciI	CCGC	2 cut(s)	208, 769
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	6 cut(s)	119, 320, 464, 665, 747, 765
AluI	AGCT	6 cut(s)	119, 320, 464, 665, 747, 765
Alw21I	GWGCWC	1 cut(s)	767
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	321
ApeKI	GCWGC	3 cut(s)	29, 662, 755
ApoI	RAATTY	1 cut(s)	15
AvaI	CYCGRG	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	767
BbvCI	CCTCAGC	1 cut(s)	616
BbvI	GCAGC	3 cut(s)	16, 674, 767
BccI	CCATC	3 cut(s)	78, 280, 658
BcgI	CGANNNNNNTGC	2 cut(s)	747, 781
BciT130I	CCWGG	1 cut(s)	776
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	753
BfuAI	ACCTGC	1 cut(s)	446
BglII	AGATCT	2 cut(s)	334, 419
BisI	GCNGC	4 cut(s)	30, 208, 663, 756
BlsI	GCNGC	4 cut(s)	31, 209, 664, 757
Bme1390I	CCNGG	1 cut(s)	776
BmeT110I	CYCGRG	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	773
BmrFI	CCNGG	1 cut(s)	776
BpiI	GAAGAC	1 cut(s)	137
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
Bpu10I	CCTNAGC	1 cut(s)	616
BpuEI	CTTGAG	2 cut(s)	421, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	765
BseBI	CCWGG	1 cut(s)	776
BseGI	GGATG	4 cut(s)	103, 291, 650, 736
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	4 cut(s)	414, 429, 630, 755
BseRI	GAGGAG	2 cut(s)	107, 381
BseXI	GCAGC	3 cut(s)	16, 674, 767
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	769
BsiHKAI	GWGCWC	1 cut(s)	767
BsiHKCI	CYCGRG	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmI	GAATGC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	767
Bsp143I	GATC	4 cut(s)	255, 279, 334, 419
BspACI	CCGC	2 cut(s)	208, 769
BspCNI	CTCAG	4 cut(s)	415, 430, 629, 754
BspFNI	CGCG	1 cut(s)	769
BspHI	TCATGA	1 cut(s)	636
BspLI	GGNNCC	1 cut(s)	773
BspMAI	CTGCAG	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	765
BssMI	GATC	4 cut(s)	255, 279, 334, 419
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	2 cut(s)	235, 313
Bst6I	CTCTTC	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	767
BstDEI	CTNAG	4 cut(s)	423, 438, 616, 741
BstF5I	GGATG	4 cut(s)	103, 291, 650, 736
BstFNI	CGCG	1 cut(s)	769
BstKTI	GATC	4 cut(s)	258, 282, 337, 422
BstMBI	GATC	4 cut(s)	255, 279, 334, 419
BstMWI	GCNNNNNNNGC	4 cut(s)	461, 494, 503, 771
BstNI	CCWGG	1 cut(s)	776
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	774
BstSFI	CTRYAG	1 cut(s)	753
BstUI	CGCG	1 cut(s)	769
BstV1I	GCAGC	3 cut(s)	16, 674, 767
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	2 cut(s)	334, 419
BstYI	RGATCY	2 cut(s)	334, 419
BtsCI	GGATG	4 cut(s)	103, 291, 650, 736
BtsIMutI	CAGTG	2 cut(s)	159, 718
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	767
CciI	TCATGA	1 cut(s)	636
CviAII	CATG	3 cut(s)	378, 536, 637
DdeI	CTNAG	4 cut(s)	423, 438, 616, 741
DpnI	GATC	4 cut(s)	257, 281, 336, 421
DpnII	GATC	4 cut(s)	255, 279, 334, 419
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Ecl136II	GAGCTC	1 cut(s)	765
Eco24I	GRGCYC	1 cut(s)	767
Eco53kI	GAGCTC	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	765
EcoRII	CCWGG	1 cut(s)	774
EcoT38I	GRGCYC	1 cut(s)	767
FaeI	CATG	3 cut(s)	381, 539, 640
FatI	CATG	3 cut(s)	377, 535, 636
Fnu4HI	GCNGC	4 cut(s)	30, 208, 663, 756
FokI	GGATG	4 cut(s)	110, 298, 637, 723
FriOI	GRGCYC	1 cut(s)	767
Fsp4HI	GCNGC	4 cut(s)	30, 208, 663, 756
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	4 cut(s)	30, 208, 663, 756
Hin1II	CATG	3 cut(s)	381, 539, 640
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	4 cut(s)	192, 305, 689, 719
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	3 cut(s)	424, 439, 744
Hpy188III	TCNNGA	4 cut(s)	113, 277, 283, 637
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	4 cut(s)	47, 95, 168, 442
HpyCH4III	ACNGT	2 cut(s)	235, 313
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	5 cut(s)	32, 344, 455, 572, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	461, 494, 503, 771
HpyF3I	CTNAG	4 cut(s)	423, 438, 616, 741
HpySE526I	ACGT	1 cut(s)	726
Hsp92II	CATG	3 cut(s)	381, 539, 640
Kzo9I	GATC	4 cut(s)	255, 279, 334, 419
LmnI	GCTCC	2 cut(s)	368, 771
Lsp1109I	GCAGC	3 cut(s)	16, 674, 767
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	2 cut(s)	229, 349
MalI	GATC	4 cut(s)	257, 281, 336, 421
MboI	GATC	4 cut(s)	255, 279, 334, 419
MboII	GAAGA	7 cut(s)	98, 142, 426, 692, 695, 698, 779
MflI	RGATCY	2 cut(s)	334, 419
MhlI	GDGCHC	1 cut(s)	767
MluCI	AATT	4 cut(s)	15, 148, 216, 644
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	9 cut(s)	85, 88, 195, 359, 442, 499, 625, 664, 750
MseI	TTAA	2 cut(s)	512, 701
MslI	CAYNNNNRTG	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	776
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	776
MvnI	CGCG	1 cut(s)	769
MwoI	GCNNNNNNNGC	4 cut(s)	461, 494, 503, 771
NdeII	GATC	4 cut(s)	255, 279, 334, 419
NlaIII	CATG	3 cut(s)	381, 539, 640
NlaIV	GGNNCC	1 cut(s)	773
NspI	RCATGY	1 cut(s)	381
PagI	TCATGA	1 cut(s)	636
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	4 cut(s)	192, 305, 689, 719
PkrI	GCNGC	4 cut(s)	31, 209, 664, 757
PsiI	TTATAA	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	767
Psp6I	CCWGG	1 cut(s)	774
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	1 cut(s)	773
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	2 cut(s)	334, 419
RseI	CAYNNNNRTG	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	767
SaqAI	TTAA	2 cut(s)	512, 701
SatI	GCNGC	4 cut(s)	30, 208, 663, 756
Sau3AI	GATC	4 cut(s)	255, 279, 334, 419
ScrFI	CCNGG	1 cut(s)	776
SduI	GDGCHC	1 cut(s)	767
SfcI	CTRYAG	1 cut(s)	753
SmiMI	CAYNNNNRTG	1 cut(s)	376
SmlI	CTYRAG	2 cut(s)	400, 490
SmoI	CTYRAG	2 cut(s)	400, 490
Sse9I	AATT	4 cut(s)	15, 148, 216, 644
SsiI	CCGC	2 cut(s)	208, 769
SspMI	CTAG	1 cut(s)	239
SstI	GAGCTC	1 cut(s)	767
StyD4I	CCNGG	1 cut(s)	774
TaaI	ACNGT	2 cut(s)	235, 313
TaiI	ACGT	1 cut(s)	729
TasI	AATT	4 cut(s)	15, 148, 216, 644
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	4 cut(s)	192, 305, 689, 719
Tru1I	TTAA	2 cut(s)	512, 701
Tru9I	TTAA	2 cut(s)	512, 701
TscAI	CASTG	2 cut(s)	166, 718
TseI	GCWGC	3 cut(s)	29, 662, 755
TspDTI	ATGAA	5 cut(s)	114, 141, 594, 697, 791
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	2 cut(s)	166, 718
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	381
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.