Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Forward (+)

41966867 .. 41972534

Gene Structure 5668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1287300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTTTGGATTGAGAGAAGCGTCTTGCTTTCCAAGGGTGTTGGTGGGAGTGAATGTGAGTCTTGCTCTGGTTGATGGCATTATAGCACTTCTTGCATTTTTTCAGTTAATTAGAATTCACTCGAGGAATTCACAACTTGGCTGGACTCGACAAAAAGTTTTTCATCTGTTGATTGGCTCTTCTAATTTGGGTTGCTTAATTTATTTTGTATTAACTCTTTTTGCTGCTTGCAAGGGGTGGCAATGTTGGTCTAACTCTTGTGGTTTTACCCTCATGGCATTACCCGAAATTCTGTTTTTTGCAGTGTTTCTTCTACTTTTATCGTTCTGGGTTGACCTGTGTCATCAGGCAGATGATGAGGATGATGAGGATGAAGGGAGTTTTCGTGAAGCTTTGTTGGAGCGGACATTCAGCAGACCAGATTCATTGGACAGAGATAGTCATAGGACCTGTTTTCCTCTGCGATTTATTCGTATTGGAAGCCGCCAGAGAATCGTAATTTTGGTCACCTTGCTAGTTTTTGTTATAATGATAGCAAGTGCAGTGATAATTTGGATCGGGATGGGACAAAATCCTATTGATTCTGCACTGGTGGCTCGGGTATATGTAGATCTCTTTGCAATAGCGATACTATTATTAGGAGGAGCATTAGCATGTTATGGGCTCCTATTATTCCTGAGAATGAGAAACGTTAGATCTGAGAGAGCTTCTTCTGAGATGTGGAAGGTTGCAGGTTTAGCTGTTGTTTCCGTTCTCTGTTTCGCCTCGAGTTCTTTGGTGGCTCTATTAACTGATATTCCTATGCTTTACGATTGGCATCAACAGCGTATGAAGGATGCTTATACTTCTGTTTTACTGATTTTATATTATTTCGTAGGTTCATCAATACCTTCAGCCTTTGTCTTATGGGTCATGAGAGATATACCGCCCTCTGTAACAGCTAACACACGAGAAGAACCGTCTACGTTAACCTTCATCAGCGACATTTCCACGACATTACAAGATCCTCAGAGCTGGAATGCTGCAATGAGCTTGCGGAACCAGGTGCAGGTATCAAGAACAAGCCCCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

358

Amino Acids

40.07

Weight (kDa)

6.52

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	17 - 118	7.8e-15	THH1/TOM1/TOM3 domain
THH1_TOM1-3_dom	PF06454	172 - 314	1.9e-09	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	527
Acc36I	ACCTGC	2 cut(s)	722, 1039
AccBSI	CCGCTC	1 cut(s)	403
AccI	GTMKAC	1 cut(s)	962
AciI	CCGC	4 cut(s)	403, 484, 926, 1036
AclI	AACGTT	1 cut(s)	690
AclWI	GGATC	2 cut(s)	563, 998
AcsI	RAATTY	3 cut(s)	114, 127, 288
AcuI	CTGAAG	1 cut(s)	876
AfiI	CCNNNNNNNGG	1 cut(s)	1048
AjnI	CCWGG	1 cut(s)	1041
AluBI	AGCT	6 cut(s)	392, 707, 740, 941, 1014, 1032
AluI	AGCT	6 cut(s)	392, 707, 740, 941, 1014, 1032
AlwI	GGATC	2 cut(s)	563, 998
Ama87I	CYCGRG	3 cut(s)	121, 597, 766
ApeKI	GCWGC	2 cut(s)	224, 1022
ApoI	RAATTY	3 cut(s)	114, 127, 288
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	499
AvaI	CYCGRG	3 cut(s)	121, 597, 766
AvaII	GGWCC	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	666
BauI	CACGAG	1 cut(s)	948
BbvI	GCAGC	2 cut(s)	211, 1009
BccI	CCATC	2 cut(s)	68, 556
BciT130I	CCWGG	1 cut(s)	1043
BfaI	CTAG	1 cut(s)	515
BfuAI	ACCTGC	2 cut(s)	722, 1039
BglII	AGATCT	2 cut(s)	610, 695
BisI	GCNGC	3 cut(s)	225, 484, 1023
BlsI	GCNGC	3 cut(s)	226, 485, 1024
Bme1390I	CCNGG	1 cut(s)	1043
Bme18I	GGWCC	1 cut(s)	447
BmeT110I	CYCGRG	3 cut(s)	121, 597, 766
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	2 cut(s)	665, 1040
BmrFI	CCNGG	1 cut(s)	1043
BmsI	GCATC	2 cut(s)	826, 826
BoxI	GACNNNNGTC	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BsaBI	GATNNNNATC	1 cut(s)	816
BsaJI	CCNNGG	1 cut(s)	32
BsaXI	ACNNNNNCTCC	4 cut(s)	39, 69, 370, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	1048
Bse1I	ACTGG	1 cut(s)	594
Bse3DI	GCAATG	2 cut(s)	248, 1032
Bse8I	GATNNNNATC	1 cut(s)	816
BseBI	CCWGG	1 cut(s)	1043
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	4 cut(s)	367, 376, 567, 841
BseJI	GATNNNNATC	1 cut(s)	816
BseLI	CCNNNNNNNGG	1 cut(s)	1048
BseMI	GCAATG	2 cut(s)	248, 1032
BseMII	CTCAG	4 cut(s)	668, 690, 705, 1022
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	1 cut(s)	657
BseXI	GCAGC	2 cut(s)	211, 1009
BsgI	GTGCAG	3 cut(s)	561, 570, 1067
BsiHKCI	CYCGRG	3 cut(s)	121, 597, 766
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	1 cut(s)	1048
BsmFI	GGGAC	1 cut(s)	579
BsmI	GAATGC	1 cut(s)	1024
BsoBI	CYCGRG	3 cut(s)	121, 597, 766
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	4 cut(s)	555, 610, 695, 1003
BspACI	CCGC	4 cut(s)	403, 484, 926, 1036
BspCNI	CTCAG	4 cut(s)	669, 691, 706, 1021
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	2 cut(s)	665, 1040
BspMI	ACCTGC	2 cut(s)	722, 1039
BspPI	GGATC	2 cut(s)	563, 998
BspQI	GCTCTTC	1 cut(s)	184
BsrBI	CCGCTC	1 cut(s)	403
BsrDI	GCAATG	2 cut(s)	248, 1032
BsrI	ACTGG	1 cut(s)	594
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	4 cut(s)	555, 610, 695, 1003
BssSI	CACGAG	1 cut(s)	948
BssT1I	CCWWGG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	948
Bst2UI	CCWGG	1 cut(s)	1043
Bst4CI	ACNGT	1 cut(s)	960
Bst6I	CTCTTC	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	229, 1034
BstDEI	CTNAG	4 cut(s)	677, 699, 714, 1008
BstEII	GGTNACC	1 cut(s)	505
BstF5I	GGATG	4 cut(s)	367, 376, 567, 841
BstKTI	GATC	4 cut(s)	558, 613, 698, 1006
BstMBI	GATC	4 cut(s)	555, 610, 695, 1003
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 593, 737, 823
BstNI	CCWGG	1 cut(s)	1043
BstNSI	RCATGY	1 cut(s)	657
BstPAI	GACNNNNGTC	1 cut(s)	339
BstPI	GGTNACC	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	1041
BstV1I	GCAGC	2 cut(s)	211, 1009
BstX2I	RGATCY	3 cut(s)	610, 695, 1003
BstYI	RGATCY	3 cut(s)	610, 695, 1003
BtsCI	GGATG	4 cut(s)	367, 376, 567, 841
BtsI	GCAGTG	2 cut(s)	309, 549
BtsIMutI	CAGTG	3 cut(s)	309, 549, 587
BveI	ACCTGC	2 cut(s)	722, 1039
Cac8I	GCNNGC	2 cut(s)	229, 1034
CciI	TCATGA	1 cut(s)	912
Cfr13I	GGNCC	1 cut(s)	447
CseI	GACGC	1 cut(s)	9
CsiI	ACCWGGT	1 cut(s)	1041
CviAII	CATG	3 cut(s)	274, 654, 913
DdeI	CTNAG	4 cut(s)	677, 699, 714, 1008
DpnI	GATC	4 cut(s)	557, 612, 697, 1005
DpnII	GATC	4 cut(s)	555, 610, 695, 1003
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	666
Eco47I	GGWCC	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	876
Eco88I	CYCGRG	3 cut(s)	121, 597, 766
Eco91I	GGTNACC	1 cut(s)	505
EcoO109I	RGGNCCY	1 cut(s)	447
EcoO65I	GGTNACC	1 cut(s)	505
EcoRI	GAATTC	2 cut(s)	114, 127
EcoRII	CCWGG	1 cut(s)	1041
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	3 cut(s)	277, 657, 916
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	3 cut(s)	273, 653, 912
FblI	GTMKAC	1 cut(s)	962
Fnu4HI	GCNGC	3 cut(s)	225, 484, 1023
FokI	GGATG	4 cut(s)	374, 383, 574, 848
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	3 cut(s)	225, 484, 1023
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	3 cut(s)	225, 484, 1023
HgaI	GACGC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	277, 657, 916
HincII	GTYRAC	2 cut(s)	334, 969
HindII	GTYRAC	2 cut(s)	334, 969
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	5 cut(s)	58, 145, 422, 492, 581
HpaI	GTTAAC	1 cut(s)	969
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	3 cut(s)	334, 963, 969
Hpy188I	TCNGA	3 cut(s)	700, 715, 1011
Hpy188III	TCNNGA	5 cut(s)	386, 559, 676, 913, 1056
Hpy8I	GTNNAC	3 cut(s)	334, 963, 969
HpyAV	CCTTC	5 cut(s)	368, 718, 826, 900, 982
HpyCH4III	ACNGT	1 cut(s)	960
HpyCH4IV	ACGT	2 cut(s)	690, 965
HpyCH4V	TGCA	9 cut(s)	95, 231, 302, 542, 587, 620, 731, 1025, 1048
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 593, 737, 823
HpyF3I	CTNAG	4 cut(s)	677, 699, 714, 1008
HpySE526I	ACGT	2 cut(s)	690, 965
Hsp92II	CATG	3 cut(s)	277, 657, 916
KspAI	GTTAAC	1 cut(s)	969
Kzo9I	GATC	4 cut(s)	555, 610, 695, 1003
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	3 cut(s)	400, 644, 669
Lsp1109I	GCAGC	2 cut(s)	211, 1009
LweI	GCATC	2 cut(s)	826, 826
MabI	ACCWGGT	1 cut(s)	1041
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	2 cut(s)	690, 965
MaeIII	GTNAC	2 cut(s)	505, 934
MalI	GATC	4 cut(s)	557, 612, 697, 1005
MbiI	CCGCTC	1 cut(s)	403
MboI	GATC	4 cut(s)	555, 610, 695, 1003
MboII	GAAGA	4 cut(s)	171, 302, 702, 965
MflI	RGATCY	3 cut(s)	610, 695, 1003
MhlI	GDGCHC	1 cut(s)	666
MluCI	AATT	8 cut(s)	108, 114, 127, 184, 198, 288, 498, 549
MlyI	GAGTC	2 cut(s)	67, 139
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	9 cut(s)	117, 281, 352, 361, 468, 635, 775, 940, 1017
MseI	TTAA	5 cut(s)	107, 197, 212, 788, 968
MslI	CAYNNNNRTG	1 cut(s)	652
MspR9I	CCNGG	1 cut(s)	1043
Mva1269I	GAATGC	1 cut(s)	1024
MvaI	CCWGG	1 cut(s)	1043
MwoI	GCNNNNNNNGC	4 cut(s)	92, 593, 737, 823
NdeII	GATC	4 cut(s)	555, 610, 695, 1003
NlaIII	CATG	3 cut(s)	277, 657, 916
NlaIV	GGNNCC	2 cut(s)	665, 1040
NmuCI	GTSAC	1 cut(s)	505
NspI	RCATGY	1 cut(s)	657
PaeR7I	CTCGAG	2 cut(s)	121, 766
PagI	TCATGA	1 cut(s)	912
PciSI	GCTCTTC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	1024
PfeI	GAWTC	3 cut(s)	422, 492, 581
PkrI	GCNGC	3 cut(s)	226, 485, 1024
PleI	GAGTC	2 cut(s)	66, 139
PpsI	GAGTC	2 cut(s)	66, 139
PpuMI	RGGWCCY	1 cut(s)	447
PshAI	GACNNNNGTC	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	527
Psp1406I	AACGTT	1 cut(s)	690
Psp5II	RGGWCCY	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	1041
PspEI	GGTNACC	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	1041
PspN4I	GGNNCC	2 cut(s)	665, 1040
PspPI	GGNCC	1 cut(s)	447
PspPPI	RGGWCCY	1 cut(s)	447
PspXI	VCTCGAGB	2 cut(s)	121, 766
PsuI	RGATCY	3 cut(s)	610, 695, 1003
RseI	CAYNNNNRTG	1 cut(s)	652
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	5 cut(s)	107, 197, 212, 788, 968
SatI	GCNGC	3 cut(s)	225, 484, 1023
Sau3AI	GATC	4 cut(s)	555, 610, 695, 1003
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	2 cut(s)	67, 139
ScrFI	CCNGG	1 cut(s)	1043
SduI	GDGCHC	1 cut(s)	666
SexAI	ACCWGGT	1 cut(s)	1041
SfaNI	GCATC	2 cut(s)	826, 826
Sfr274I	CTCGAG	2 cut(s)	121, 766
SinI	GGWCC	1 cut(s)	447
SlaI	CTCGAG	2 cut(s)	121, 766
SmiMI	CAYNNNNRTG	1 cut(s)	652
SmlI	CTYRAG	2 cut(s)	121, 766
SmoI	CTYRAG	2 cut(s)	121, 766
Sse9I	AATT	8 cut(s)	108, 114, 127, 184, 198, 288, 498, 549
SsiI	CCGC	4 cut(s)	403, 484, 926, 1036
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	1041
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	960
TaiI	ACGT	2 cut(s)	693, 968
TaqI	TCGA	3 cut(s)	122, 148, 767
TasI	AATT	8 cut(s)	108, 114, 127, 184, 198, 288, 498, 549
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	3 cut(s)	422, 492, 581
Tru1I	TTAA	5 cut(s)	107, 197, 212, 788, 968
Tru9I	TTAA	5 cut(s)	107, 197, 212, 788, 968
TscAI	CASTG	3 cut(s)	309, 549, 594
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	2 cut(s)	224, 1022
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	6 cut(s)	152, 387, 414, 845, 870, 964
TspGWI	ACGGA	1 cut(s)	739
TspRI	CASTG	3 cut(s)	309, 549, 594
VpaK11BI	GGWCC	1 cut(s)	447
XapI	RAATTY	3 cut(s)	114, 127, 288
XceI	RCATGY	1 cut(s)	657
XhoI	CTCGAG	2 cut(s)	121, 766
XmiI	GTMKAC	1 cut(s)	962
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.