Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Forward (+)

85041575 .. 85047978

Gene Structure 6404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTTTGAATTGAGAGAAGGGTCTTGTTTGCCAAAGGTGTTGGTGGGTGTCAATGTGGGTCTTGCTCTTGTTGATGCCATTATAGCTACCCTTGCATTTTATCAGTTAATTAGGATTCACTTGAGGAATTCACAACATGGATGGACTCGCCAAAAAGTTTTTCATCTGTTGATTGGCTCTTCGAATTTGGGTTGCTTAATTTATCTTGTATTAACTCTTTTTGCTGCTTGCAAGGGGTGGAAATGTTGGTCCAACTCTTGTGGTTTTAGCCTCATGGCGTTACCCAAAATTTTGTTTTTTGCTGCATTCCTTCTACTTTTATCGTTCTGGGTTGACCTGTGCCATCAGGCAGATGACGAAGATGAGGAGGATGAAGGTAGTTTTCAGGAAGCTTTGTTGGAGAAGGCATTTAGCAAAACTAATTCATTGGACACTGATAGTCATAGAAGGTGTTTTCCTCTGCGAATCCATATTGGAAGCCGCCAGAAAGTTGTAGTTTTGGTTACTGTGCTAGTTTTTATTATAATGATCGCATGTGCTGTGATAATCTGGATCGGGATGGGAAAAAATCCCATTGATTCTGCTGTGGTAGCTCGGGTATATGTAGATCTTTTTGCAATAGTAACACTATTATTGGGAGGAGCATTGGCATGTTATGGACTTCTATTATGCTTGAGAATGAGACAAGTTAGATCTGAGAGAGCCTCTTCTGAGATGTGGAAGGTTGCAGGTTTAGCTGTCGTTTCCGTTCTATGTTTCGCCTCAAGTGCTTTCGTGGCTCTATTAACTGATATTCCTATGCTTTACCATGACTATCAACAGCCTGTGAATGGTGTTTATACTGCTCTTTTGCTGATTTTATATTATTTTGTAGGTTCATCAATACCCTCAGCGTATGTATTATGGGTCATGAGAGAATTACCACCCTCAATAGCAGCTAACATACGACAACAAGAAGAAGAATCAACTACATTAACATTCATCAGTGATGATTCCAACGTATTACCACATCCTCAGAGCTGGACAGCAGCAATGAGCTTGCGGAACCAGGTGCAGGTATCAAGAGTAAGTCCGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

359

Amino Acids

39.97

Weight (kDa)

6.7

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	17 - 118	1.3e-14	THH1/TOM1/TOM3 domain
THH1_TOM1-3_dom	PF06454	170 - 312	5.1e-09	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
Acc36I	ACCTGC	2 cut(s)	719, 1045
AciI	CCGC	2 cut(s)	481, 1042
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	3 cut(s)	127, 184, 288
AfiI	CCNNNNNNNGG	2 cut(s)	830, 1054
AgsI	TTSAA	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	1047
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AluBI	AGCT	7 cut(s)	86, 392, 593, 737, 938, 1020, 1038
AluI	AGCT	7 cut(s)	86, 392, 593, 737, 938, 1020, 1038
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	1 cut(s)	560
Ama87I	CYCGRG	1 cut(s)	594
ApeKI	GCWGC	4 cut(s)	224, 302, 935, 1028
ApoI	RAATTY	3 cut(s)	127, 184, 288
AspS9I	GGNCC	1 cut(s)	249
AsuII	TTCGAA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	594
AvaII	GGWCC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	889
BbvI	GCAGC	4 cut(s)	211, 289, 947, 1040
BccI	CCATC	3 cut(s)	135, 351, 553
BciT130I	CCWGG	1 cut(s)	1049
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	1 cut(s)	512
BfuAI	ACCTGC	2 cut(s)	719, 1045
BglII	AGATCT	2 cut(s)	607, 692
BisI	GCNGC	5 cut(s)	225, 303, 481, 936, 1029
BlsI	GCNGC	5 cut(s)	226, 304, 482, 937, 1030
Bme1390I	CCNGG	1 cut(s)	1049
Bme18I	GGWCC	1 cut(s)	249
BmeT110I	CYCGRG	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	1046
BmrFI	CCNGG	1 cut(s)	1049
BmsI	GCATC	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
Bpu10I	CCTNAGC	1 cut(s)	889
Bpu14I	TTCGAA	1 cut(s)	182
BpuEI	CTTGAG	3 cut(s)	142, 694, 748
Bsc4I	CCNNNNNNNGG	2 cut(s)	830, 1054
Bse3DI	GCAATG	1 cut(s)	1038
BseBI	CCWGG	1 cut(s)	1049
BseGI	GGATG	4 cut(s)	146, 376, 564, 1009
BseLI	CCNNNNNNNGG	2 cut(s)	830, 1054
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	4 cut(s)	687, 702, 903, 1028
BseRI	GAGGAG	2 cut(s)	380, 654
BseXI	GCAGC	4 cut(s)	211, 289, 947, 1040
BsgI	GTGCAG	1 cut(s)	1073
BsiHKCI	CYCGRG	1 cut(s)	594
BslI	CCNNNNNNNGG	2 cut(s)	830, 1054
BsmAI	GTCTC	1 cut(s)	676
BsmI	GAATGC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	594
Bsp119I	TTCGAA	1 cut(s)	182
Bsp143I	GATC	4 cut(s)	528, 552, 607, 692
BspACI	CCGC	2 cut(s)	481, 1042
BspCNI	CTCAG	4 cut(s)	688, 703, 902, 1027
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	1 cut(s)	1046
BspMI	ACCTGC	2 cut(s)	719, 1045
BspPI	GGATC	1 cut(s)	560
BspQI	GCTCTTC	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	1038
BssMI	GATC	4 cut(s)	528, 552, 607, 692
Bst2UI	CCWGG	1 cut(s)	1049
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	2 cut(s)	184, 712
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	229, 1040
BstDEI	CTNAG	4 cut(s)	696, 711, 889, 1014
BstF5I	GGATG	4 cut(s)	146, 376, 564, 1009
BstKTI	GATC	4 cut(s)	531, 555, 610, 695
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	4 cut(s)	528, 552, 607, 692
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 590, 734, 767, 776
BstNI	CCWGG	1 cut(s)	1049
BstNSI	RCATGY	2 cut(s)	537, 654
BstSCI	CCNGG	1 cut(s)	1047
BstV1I	GCAGC	4 cut(s)	211, 289, 947, 1040
BstX2I	RGATCY	2 cut(s)	607, 692
BstYI	RGATCY	2 cut(s)	607, 692
BtsCI	GGATG	4 cut(s)	146, 376, 564, 1009
BtsIMutI	CAGTG	2 cut(s)	432, 991
BveI	ACCTGC	2 cut(s)	719, 1045
Cac8I	GCNNGC	2 cut(s)	229, 1040
CciI	TCATGA	1 cut(s)	909
Cfr13I	GGNCC	1 cut(s)	249
CsiI	ACCWGGT	1 cut(s)	1047
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	6 cut(s)	137, 274, 534, 651, 809, 910
DdeI	CTNAG	4 cut(s)	696, 711, 889, 1014
DpnI	GATC	4 cut(s)	530, 554, 609, 694
DpnII	GATC	4 cut(s)	528, 552, 607, 692
Eam1104I	CTCTTC	2 cut(s)	184, 712
EarI	CTCTTC	2 cut(s)	184, 712
Eco47I	GGWCC	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	594
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	1047
FaeI	CATG	6 cut(s)	140, 277, 537, 654, 812, 913
FatI	CATG	6 cut(s)	136, 273, 533, 650, 808, 909
Fnu4HI	GCNGC	5 cut(s)	225, 303, 481, 936, 1029
FokI	GGATG	4 cut(s)	153, 383, 571, 996
Fsp4HI	GCNGC	5 cut(s)	225, 303, 481, 936, 1029
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	5 cut(s)	225, 303, 481, 936, 1029
Hin1II	CATG	6 cut(s)	140, 277, 537, 654, 812, 913
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	6 cut(s)	115, 145, 465, 578, 962, 992
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	697, 712, 1017, 1074
Hpy188III	TCNNGA	5 cut(s)	386, 550, 556, 910, 1062
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	6 cut(s)	11, 320, 368, 397, 441, 715
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	1 cut(s)	999
HpyCH4V	TGCA	6 cut(s)	95, 231, 305, 617, 728, 1054
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 590, 734, 767, 776
HpyF3I	CTNAG	4 cut(s)	696, 711, 889, 1014
HpySE526I	ACGT	1 cut(s)	999
Hsp92II	CATG	6 cut(s)	140, 277, 537, 654, 812, 913
Kzo9I	GATC	4 cut(s)	528, 552, 607, 692
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	641
Lsp1109I	GCAGC	4 cut(s)	211, 289, 947, 1040
LweI	GCATC	1 cut(s)	64
MabI	ACCWGGT	1 cut(s)	1047
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	999
MaeIII	GTNAC	3 cut(s)	279, 502, 622
MalI	GATC	4 cut(s)	530, 554, 609, 694
MboI	GATC	4 cut(s)	528, 552, 607, 692
MboII	GAAGA	5 cut(s)	171, 371, 699, 968, 971
MflI	RGATCY	2 cut(s)	607, 692
MluCI	AATT	8 cut(s)	8, 108, 127, 184, 198, 288, 421, 917
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	3 cut(s)	276, 378, 1020
MseI	TTAA	5 cut(s)	107, 197, 212, 785, 974
MslI	CAYNNNNRTG	1 cut(s)	649
MspR9I	CCNGG	1 cut(s)	1049
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	1049
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 590, 734, 767, 776
NdeII	GATC	4 cut(s)	528, 552, 607, 692
NlaIII	CATG	6 cut(s)	140, 277, 537, 654, 812, 913
NlaIV	GGNNCC	1 cut(s)	1046
NspI	RCATGY	2 cut(s)	537, 654
NspV	TTCGAA	1 cut(s)	182
PagI	TCATGA	1 cut(s)	909
PciSI	GCTCTTC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	305
PfeI	GAWTC	5 cut(s)	115, 465, 578, 962, 992
PkrI	GCNGC	5 cut(s)	226, 304, 482, 937, 1030
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PsiI	TTATAA	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	1047
PspGI	CCWGG	1 cut(s)	1047
PspN4I	GGNNCC	1 cut(s)	1046
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	2 cut(s)	607, 692
RseI	CAYNNNNRTG	1 cut(s)	649
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	5 cut(s)	107, 197, 212, 785, 974
SatI	GCNGC	5 cut(s)	225, 303, 481, 936, 1029
Sau3AI	GATC	4 cut(s)	528, 552, 607, 692
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	1049
SexAI	ACCWGGT	1 cut(s)	1047
SfaNI	GCATC	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	649
SmlI	CTYRAG	3 cut(s)	121, 673, 763
SmoI	CTYRAG	3 cut(s)	121, 673, 763
Sse9I	AATT	8 cut(s)	8, 108, 127, 184, 198, 288, 421, 917
SsiI	CCGC	2 cut(s)	481, 1042
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	1047
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	1 cut(s)	1002
TaqI	TCGA	1 cut(s)	182
TasI	AATT	8 cut(s)	8, 108, 127, 184, 198, 288, 421, 917
TauI	GCSGC	1 cut(s)	483
TfiI	GAWTC	5 cut(s)	115, 465, 578, 962, 992
Tru1I	TTAA	5 cut(s)	107, 197, 212, 785, 974
Tru9I	TTAA	5 cut(s)	107, 197, 212, 785, 974
TscAI	CASTG	2 cut(s)	439, 991
TseI	GCWGC	4 cut(s)	224, 302, 935, 1028
TspDTI	ATGAA	5 cut(s)	152, 387, 414, 867, 970
TspGWI	ACGGA	1 cut(s)	736
TspRI	CASTG	2 cut(s)	439, 991
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	3 cut(s)	127, 184, 288
XceI	RCATGY	2 cut(s)	537, 654
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.