Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Reverse (-)

29883602 .. 29888947

Gene Structure 5346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGACAAGTTAGATCTGAGAGGGCTTCTTCTGAGATGTGGAAGATGCTTTACCACGACTATCAACAGCCTGTGAATGGTGTTTATACTACGCTTTTGCTGATTTTATATTATTTTGTAGGTTCGTCAATACCCTCAGCGTATGTATTATGGGTCATGAGAGAATTACCACCCTCAATAGCAGCTAACATACGACAACAAGAAGAAGAATCAACTACATTAACATTCATCAGTGATGATTCCAACATATTACCACATCCTCAGAGCTGGACTGCAGCAATGAGCTTGCGGAACCAGCTGAAAGAACTGAACTGTTATAACAACAGCACTCCTCTTCAAGCTGTCAAGCAACAAAGCAGAAGACTTGATTCAATTTCTGGGTTCTTCAAGCTCAACACAGAGAAGTTCTATACTGAAGTCCAGGAAATTATACTTGCTAGGTACAATAAAACTTTTGATTGGGCTTTGAAAGCAAAAATGATGGGAAAGAAAGCAATAGAAGCTGCTCGGGTCTTTGTTGAAGACACTAGACTTGGTGACTCTTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

183

Amino Acids

21.32

Weight (kDa)

8.57

Isoelectric Point (pI)

71.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AciI	CCGC	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	5 cut(s)	338, 372, 388, 469, 521
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	7 cut(s)	185, 267, 285, 298, 341, 391, 503
AluI	AGCT	7 cut(s)	185, 267, 285, 298, 341, 391, 503
Ama87I	CYCGRG	1 cut(s)	507
ApeKI	GCWGC	3 cut(s)	182, 275, 503
AsuHPI	GGTGA	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	507
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BbsI	GAAGAC	2 cut(s)	367, 528
BbvCI	CCTCAGC	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	194, 287, 490
BccI	CCATC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	422
BfaI	CTAG	2 cut(s)	438, 528
BfmI	CTRYAG	1 cut(s)	273
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	3 cut(s)	183, 276, 504
BlsI	GCNGC	3 cut(s)	184, 277, 505
Bme1390I	CCNGG	1 cut(s)	422
BmeT110I	CYCGRG	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	36
BpiI	GAAGAC	2 cut(s)	367, 528
Bpu10I	CCTNAGC	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	4 cut(s)	9, 24, 150, 275
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	3 cut(s)	194, 287, 490
BsiHKCI	CYCGRG	1 cut(s)	507
BslI	CCNNNNNNNGG	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	507
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	1 cut(s)	289
BspCNI	CTCAG	4 cut(s)	10, 25, 149, 274
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	293
BspMAI	CTGCAG	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	285
BssMI	GATC	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	4 cut(s)	18, 33, 136, 261
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 470, 500
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	194, 287, 490
BstV2I	GAAGAC	2 cut(s)	367, 528
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	287
CciI	TCATGA	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	1 cut(s)	157
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	4 cut(s)	18, 33, 136, 261
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	420
FaeI	CATG	1 cut(s)	160
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	183, 276, 504
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	3 cut(s)	183, 276, 504
FspBI	CTAG	2 cut(s)	438, 528
GluI	GCNGC	3 cut(s)	183, 276, 504
Hin1II	CATG	1 cut(s)	160
HinfI	GANTC	4 cut(s)	209, 239, 368, 539
HphI	GGTGA	1 cut(s)	548
Hpy188I	TCNGA	3 cut(s)	19, 34, 264
Hpy188III	TCNNGA	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 470, 500
HpyF3I	CTNAG	4 cut(s)	18, 33, 136, 261
Hsp92II	CATG	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	6 cut(s)	84, 253, 308, 363, 407, 434
Lsp1109I	GCAGC	3 cut(s)	194, 287, 490
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	2 cut(s)	438, 528
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	8 cut(s)	21, 55, 215, 218, 326, 372, 376, 533
MflI	RGATCY	1 cut(s)	14
MluCI	AATT	3 cut(s)	164, 372, 426
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	15, 145, 184, 270, 342
MseI	TTAA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	298
MspR9I	CCNGG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	3 cut(s)	295, 470, 500
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	536
PagI	TCATGA	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	209, 239, 368
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	184, 277, 505
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
PsiI	TTATAA	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	3 cut(s)	183, 276, 504
Sau3AI	GATC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	422
SetI	ASST	9 cut(s)	124, 187, 269, 287, 300, 343, 393, 443, 505
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	273
Sse9I	AATT	3 cut(s)	164, 372, 426
SsiI	CCGC	1 cut(s)	289
SspMI	CTAG	2 cut(s)	438, 528
StyD4I	CCNGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	314
TasI	AATT	3 cut(s)	164, 372, 426
TfiI	GAWTC	3 cut(s)	209, 239, 368
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	3 cut(s)	182, 275, 503
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	1 cut(s)	217
TspRI	CASTG	1 cut(s)	238
XspI	CTAG	2 cut(s)	438, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.