Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Forward (+)

12294733 .. 12302689

Gene Structure 7957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1137300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGATGTTCTTCTTGGAGCTACCAGTGGAAAAAGGTGATTGCTTTCCGTCGGACTTGCTTATCTTCAACATAGCTCTGGCCATCTTCAATGGCGTTCTTGCTGCGGTTGCGTTTTCTCAGCTGATCAGAATTCATATGCGCAATCAACAAAGTGGATGGACACGCCAAAAAGTACTCCACCTCTTGATTGGCTCTTCTAACTTGGGTTACTTCATATACTTTACATTTACGCTGGTTGTAACTTGTAAGCAGTGGCGTTGCTGGTCTAATGTCTGTGGATTTATTCTGATGGCCTACCCGAAAGTTCTGTTTCTCGCAGCCTTTCTTTCACTCCTATCCTTTTGGTTCGACCTTTGCCATCAGGCAAATGATGAAGAGGATGAAGATGATGAAGAGGACAACAGCGTGGAGCAGACCTTGTTCGAAAATTCAAAGAATTCATCAAGCACAGATGGTCATCGGGTTTGTTGTTCATTCCAAAGCATTCATGTTGGAAGTCACCAAAAGTTTGTGATTGCGGTTGTTGTGTTTGTCCTTATTCTGATGATGTCATTTGCTGTGGTAATCTGGATTGGTGCGGGTAAGAACCCCATTGATTCTTCAGCAGTTGCTCAGGTATATGAAGACTTTCTTGGTTTTGCCGTTCTTTCACTAGGGGGAGCATTAGGTTTCTATGGCATTCTGCTATCTCGTAAGTTAAGGAAAGTACGGTCTGAGAAAGCTTCTTCCGAAATGTGGAAGGTTGCGAGCTTGGCGGTTACTTCTGTTGTATGCTTTACGTCAAGTGCATTGGTTGCTATTCTTACACATATTCCTCTATATTGTCAGCGGAGTCTGAAAATCACATATGGCGGAAAAGCACTTGTTTTTCTAATTCTGTACTACTTCATAGGATGTTTGGTGCCCTCGGCTTTTGTATTGTGGATTGTGAGAGAATTGCCACCCCCGATAACTAATCGCCAAAGGGAGCAGTCAAGAACAATTACGTTTGTCAGCTATGGTGCAGTGGGGGCACAGCGTCCTCATCAGTGGGCTACAGTAACAAGTTCAAATAATCAGGCATCACGAGCAAGTCCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

361

Amino Acids

40.24

Weight (kDa)

8.29

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	23 - 124	8.5e-13	THH1/TOM1/TOM3 domain
THH1_TOM1-3_dom	PF06454	177 - 322	1.1e-09	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	901
AciI	CCGC	6 cut(s)	104, 518, 578, 755, 829, 852
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	3 cut(s)	129, 427, 436
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	3 cut(s)	174, 708, 881
AfiI	CCNNNNNNNGG	1 cut(s)	735
AgsI	TTSAA	4 cut(s)	67, 88, 432, 1050
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AluBI	AGCT	6 cut(s)	19, 74, 121, 722, 750, 996
AluI	AGCT	6 cut(s)	19, 74, 121, 722, 750, 996
AoxI	GGCC	2 cut(s)	78, 291
ApeKI	GCWGC	2 cut(s)	101, 317
ApoI	RAATTY	3 cut(s)	129, 427, 436
Asp700I	GAANNNNTTC	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	47, 491
AsuII	TTCGAA	1 cut(s)	423
BaeGI	GKGCMC	2 cut(s)	906, 1015
BalI	TGGCCA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	901
BauI	CACGAG	1 cut(s)	1065
BbsI	GAAGAC	1 cut(s)	630
BbvI	GCAGC	2 cut(s)	88, 329
BccI	CCATC	5 cut(s)	89, 150, 283, 366, 446
BceAI	ACGGC	1 cut(s)	626
BclI	TGATCA	1 cut(s)	123
BfaI	CTAG	1 cut(s)	653
BfmI	CTRYAG	1 cut(s)	1035
BisI	GCNGC	2 cut(s)	102, 318
BlsI	GCNGC	2 cut(s)	103, 319
BmcAI	AGTACT	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	903
BmsI	GCATC	1 cut(s)	1070
BpiI	GAAGAC	1 cut(s)	630
Bpu10I	CCTNAGC	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	906
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse1I	ACTGG	1 cut(s)	23
Bse8I	GATNNNNATC	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	906
BseGI	GGATG	3 cut(s)	161, 385, 899
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMII	CTCAG	3 cut(s)	131, 626, 705
BseNI	ACTGG	1 cut(s)	23
BseSI	GKGCMC	2 cut(s)	906, 1015
BseXI	GCAGC	2 cut(s)	88, 329
BsgI	GTGCAG	1 cut(s)	1023
BshFI	GGCC	2 cut(s)	80, 293
BshNI	GGYRCC	1 cut(s)	901
BslFI	GGGAC	1 cut(s)	1059
BslI	CCNNNNNNNGG	1 cut(s)	735
BsmFI	GGGAC	1 cut(s)	1059
BsmI	GAATGC	2 cut(s)	483, 678
BsnI	GGCC	2 cut(s)	80, 293
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	906, 1015
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	6 cut(s)	104, 518, 578, 755, 829, 852
BspANI	GGCC	2 cut(s)	80, 293
BspCNI	CTCAG	3 cut(s)	130, 625, 706
BspLI	GGNNCC	1 cut(s)	903
BspQI	GCTCTTC	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	901
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	906
BssMI	GATC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	1065
Bst2BI	CACGAG	1 cut(s)	1065
Bst4CI	ACNGT	2 cut(s)	711, 1039
Bst6I	CTCTTC	3 cut(s)	199, 369, 387
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstBI	TTCGAA	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	3 cut(s)	117, 612, 714
BstF5I	GGATG	3 cut(s)	161, 385, 899
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 752, 794, 1010, 1067
BstSFI	CTRYAG	1 cut(s)	1035
BstSLI	GKGCMC	2 cut(s)	906, 1015
BstV1I	GCAGC	2 cut(s)	88, 329
BstV2I	GAAGAC	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	80, 293
BtsCI	GGATG	3 cut(s)	161, 385, 899
BtsI	GCAGTG	2 cut(s)	257, 1011
BtsIMutI	CAGTG	4 cut(s)	30, 257, 1011, 1034
Cac8I	GCNNGC	1 cut(s)	748
CfoI	GCGC	1 cut(s)	141
CseI	GACGC	1 cut(s)	1007
Csp6I	GTAC	3 cut(s)	173, 707, 880
CviAII	CATG	1 cut(s)	488
CviQI	GTAC	3 cut(s)	173, 707, 880
DdeI	CTNAG	3 cut(s)	117, 612, 714
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	3 cut(s)	199, 369, 387
EarI	CTCTTC	3 cut(s)	199, 369, 387
EciI	GGCGGA	1 cut(s)	867
Eco57I	CTGAAG	1 cut(s)	585
EcoRI	GAATTC	2 cut(s)	129, 436
FaeI	CATG	1 cut(s)	491
FalI	AAGNNNNNCTT	2 cut(s)	615, 647
FaqI	GGGAC	1 cut(s)	1059
FatI	CATG	1 cut(s)	487
FauI	CCCGC	1 cut(s)	571
FauNDI	CATATG	2 cut(s)	135, 847
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	102, 318
FokI	GGATG	3 cut(s)	168, 392, 906
Fsp4HI	GCNGC	2 cut(s)	102, 318
FspBI	CTAG	1 cut(s)	653
FspI	TGCGCA	1 cut(s)	140
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	2 cut(s)	102, 318
HaeIII	GGCC	2 cut(s)	80, 293
HgaI	GACGC	1 cut(s)	1007
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	491
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	720
HinfI	GANTC	2 cut(s)	596, 832
HphI	GGTGA	2 cut(s)	47, 491
Hpy188I	TCNGA	7 cut(s)	52, 128, 288, 543, 715, 730, 837
Hpy188III	TCNNGA	4 cut(s)	184, 568, 975, 1065
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	733
HpyCH4III	ACNGT	2 cut(s)	711, 1039
HpyCH4IV	ACGT	2 cut(s)	779, 986
HpyCH4V	TGCA	2 cut(s)	788, 1004
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 752, 794, 1010, 1067
HpyF3I	CTNAG	3 cut(s)	117, 612, 714
HpySE526I	ACGT	2 cut(s)	779, 986
Hsp92II	CATG	1 cut(s)	491
HspAI	GCGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	123
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	4 cut(s)	16, 409, 659, 967
LpnPI	CCDG	8 cut(s)	36, 62, 218, 247, 347, 553, 599, 1043
Lsp1109I	GCAGC	2 cut(s)	88, 329
LweI	GCATC	1 cut(s)	1070
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	2 cut(s)	779, 986
MaeIII	GTNAC	5 cut(s)	206, 238, 497, 757, 1039
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	9 cut(s)	55, 76, 186, 386, 395, 404, 591, 635, 717
MhlI	GDGCHC	2 cut(s)	906, 1015
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	6 cut(s)	129, 427, 436, 873, 935, 981
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	841
MmeI	TCCRAC	2 cut(s)	30, 472
MnlI	CCTC	6 cut(s)	191, 370, 388, 825, 916, 1032
Mox20I	TGGCCA	1 cut(s)	80
MroXI	GAANNNNTTC	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	1 cut(s)	698
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	2 cut(s)	121, 829
Mva1269I	GAATGC	2 cut(s)	483, 678
MwoI	GCNNNNNNNGC	5 cut(s)	107, 752, 794, 1010, 1067
NdeI	CATATG	2 cut(s)	135, 847
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	1 cut(s)	903
NmeAIII	GCCGAG	1 cut(s)	887
NmuCI	GTSAC	1 cut(s)	497
NsbI	TGCGCA	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	199
PctI	GAATGC	2 cut(s)	483, 678
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	103, 319
PleI	GAGTC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	840
PspN4I	GGNNCC	1 cut(s)	903
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	3 cut(s)	174, 708, 881
RsaNI	GTAC	3 cut(s)	173, 707, 880
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	698
SatI	GCNGC	2 cut(s)	102, 318
Sau3AI	GATC	1 cut(s)	123
ScaI	AGTACT	1 cut(s)	174
SchI	GAGTC	1 cut(s)	841
SduI	GDGCHC	2 cut(s)	906, 1015
SfaNI	GCATC	1 cut(s)	1070
SfcI	CTRYAG	1 cut(s)	1035
SfuI	TTCGAA	1 cut(s)	423
Sse9I	AATT	6 cut(s)	129, 427, 436, 873, 935, 981
SsiI	CCGC	6 cut(s)	104, 518, 578, 755, 829, 852
SspMI	CTAG	1 cut(s)	653
TaaI	ACNGT	2 cut(s)	711, 1039
TaiI	ACGT	2 cut(s)	782, 989
TaqI	TCGA	2 cut(s)	348, 423
TasI	AATT	6 cut(s)	129, 427, 436, 873, 935, 981
TatI	WGTACW	2 cut(s)	172, 879
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	1 cut(s)	698
Tru9I	TTAA	1 cut(s)	698
TscAI	CASTG	4 cut(s)	30, 257, 1011, 1034
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	101, 317
Tsp45I	GTSAC	1 cut(s)	497
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	4 cut(s)	30, 257, 1011, 1034
XapI	RAATTY	3 cut(s)	129, 427, 436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	1 cut(s)	653
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.