Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Reverse (-)

30439226 .. 30443576

Gene Structure 4351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGATTTTGTTGGAATCAATACTGGAAAAGGGTAATTGCTTCCGTCTGGACTTGCAGTTGCTTATCCTTTACATAGCTCTGGCCGTCTTCAATGGCGCTCTTGCTGCGATTGCGTTTTCTCAGCTGGTCAGGATTCACATGCGCAATCAACAAATTGGATGGACACGCCAAAAAGTACTCCACCTCATGATTGGCTGTTCTAACTTGGGTTACTTCCTCTATTTTACATCTACACTGATTGCCACTTGTAAGCAGTGGTTTTGCTGGTCTAATGTCTGCGGGTTCATTCTGATGGCCTACCCAGAAGTTCTGTTTCTTGCAGCTTTTCTTCTAGTCCTATCCTTTTGGGTGGACCTTTGCCATCAGGCAAATGATGAAGAGGAGGAGGATGATGACAGTAATATACAGCATGCCTTGTTGGTAAATTCGCAGAACAAACACCATTCATCAAACACAGATGGTCATAGGATTTGTTGCTCGTTCCCAAGCATTCACGTTGGAAGTCACCAAAAATTTGCGATTGCGGTTGTTGGGTTTGTCCTAATCTTGATGATGTCATTTTCTGTCATGATCTGGATTGGTGTGGGGAAGAATTCCATTGATTCTTCAGTAGTTGCTCAGGTATATGAAGACTTTCTCGCCTTTACAGTCCTTTTTTTAGGAGGTGGATTAGGTTGCTATGGCATTCTGCTGCTTCGTAAGTTAAGGAAAGTACGGTCTGAGAAAGCTTCATCTGAAATGTGGAAGGTTGGCGGTTTAGCAGTTGCTTCTGTTGTATGCTTTACATCAAGTGCATTAGTAGCTCTTCTTACTGATAAACCTCTATATGATCCTTGGAGTCTGAAAAAAGCATATGGCGGGAAAGCGCTAATTTTCCTGATGCTGTACTATTTTATAGGCTCTTGGGTACCCTCAGCTTTTGTATTGTGGTTCATGAGAGAATTGCCACCCCCAATCACTAATCGCCGACGGGAACAATCAACAACAATTGCATTCATCAGCCACGCTGGAGTGGGGCCACAGCATCCTCGTCAATGGGCTACTGTAACAAGTTCAAATAATCAGGCGTCGCGACCAAGTCCCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

363

Amino Acids

40.52

Weight (kDa)

8.64

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	23 - 125	1.5e-12	THH1/TOM1/TOM3 domain
THH1_TOM1-3_dom	PF06454	183 - 321	9.6e-07	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	143
Acc65I	GGTACC	1 cut(s)	907
AccB1I	GGYRCC	1 cut(s)	907
AccII	CGCG	1 cut(s)	1072
AciI	CCGC	4 cut(s)	279, 524, 753, 858
AclWI	GGATC	1 cut(s)	824
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	3 cut(s)	424, 512, 592
AcuI	CTGAAG	1 cut(s)	591
AcyI	GRCGYC	1 cut(s)	1067
AfaI	GTAC	4 cut(s)	177, 714, 887, 909
AfeI	AGCGCT	1 cut(s)	867
AgsI	TTSAA	2 cut(s)	91, 1056
AluBI	AGCT	6 cut(s)	77, 124, 323, 728, 803, 917
AluI	AGCT	6 cut(s)	77, 124, 323, 728, 803, 917
AlwI	GGATC	1 cut(s)	824
Aor51HI	AGCGCT	1 cut(s)	867
AoxI	GGCC	3 cut(s)	81, 294, 1016
ApeKI	GCWGC	3 cut(s)	104, 320, 691
ApoI	RAATTY	3 cut(s)	424, 512, 592
Asp700I	GAANNNNTTC	1 cut(s)	633
Asp718I	GGTACC	1 cut(s)	907
AspLEI	GCGC	3 cut(s)	98, 144, 868
AspS9I	GGNCC	2 cut(s)	352, 1016
AsuHPI	GGTGA	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	907
BbsI	GAAGAC	2 cut(s)	79, 636
BbvCI	CCTCAGC	1 cut(s)	913
BbvI	GCAGC	3 cut(s)	91, 332, 678
BccI	CCATC	4 cut(s)	153, 286, 369, 452
BceAI	ACGGC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	332
BfoI	RGCGCY	2 cut(s)	99, 869
BisI	GCNGC	3 cut(s)	105, 321, 692
BlsI	GCNGC	3 cut(s)	106, 322, 693
BmcAI	AGTACT	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	352, 1016
BmiI	GGNNCC	2 cut(s)	909, 1017
BmsI	GCATC	2 cut(s)	870, 1033
BpiI	GAAGAC	2 cut(s)	79, 636
BpmI	CTGGAG	1 cut(s)	1029
Bpu10I	CCTNAGC	2 cut(s)	618, 913
BsaHI	GRCGYC	1 cut(s)	1067
BsaJI	CCNNGG	1 cut(s)	833
Bse1I	ACTGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	833
BseGI	GGATG	3 cut(s)	164, 394, 1024
BseMII	CTCAG	4 cut(s)	134, 632, 711, 927
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	2 cut(s)	395, 398
BseXI	GCAGC	3 cut(s)	91, 332, 678
Bsh1236I	CGCG	1 cut(s)	1072
BshFI	GGCC	3 cut(s)	83, 296, 1018
BshNI	GGYRCC	1 cut(s)	907
BslFI	GGGAC	1 cut(s)	1065
BsmFI	GGGAC	1 cut(s)	1065
BsmI	GAATGC	3 cut(s)	489, 684, 992
BsnI	GGCC	3 cut(s)	83, 296, 1018
Bsp143I	GATC	2 cut(s)	570, 829
Bsp68I	TCGCGA	1 cut(s)	1072
BspACI	CCGC	4 cut(s)	279, 524, 753, 858
BspANI	GGCC	3 cut(s)	83, 296, 1018
BspCNI	CTCAG	4 cut(s)	133, 631, 712, 926
BspFNI	CGCG	1 cut(s)	1072
BspHI	TCATGA	3 cut(s)	186, 567, 933
BspLI	GGNNCC	2 cut(s)	909, 1017
BspPI	GGATC	1 cut(s)	824
BspQI	GCTCTTC	1 cut(s)	810
BspT107I	GGYRCC	1 cut(s)	907
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	833
BssMI	GATC	2 cut(s)	570, 829
BssNI	GRCGYC	1 cut(s)	1067
BssT1I	CCWWGG	1 cut(s)	833
Bst4CI	ACNGT	4 cut(s)	398, 649, 717, 1045
Bst6I	CTCTTC	2 cut(s)	372, 810
BstACI	GRCGYC	1 cut(s)	1067
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	4 cut(s)	120, 618, 720, 913
BstF5I	GGATG	3 cut(s)	164, 394, 1024
BstFNI	CGCG	1 cut(s)	1072
BstH2I	RGCGCY	2 cut(s)	99, 869
BstHHI	GCGC	3 cut(s)	98, 144, 868
BstKTI	GATC	2 cut(s)	573, 832
BstMBI	GATC	2 cut(s)	570, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 110, 800
BstNSI	RCATGY	2 cut(s)	142, 413
BstUI	CGCG	1 cut(s)	1072
BstV1I	GCAGC	3 cut(s)	91, 332, 678
BstV2I	GAAGAC	2 cut(s)	79, 636
BsuRI	GGCC	3 cut(s)	83, 296, 1018
BtsCI	GGATG	3 cut(s)	164, 394, 1024
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	2 cut(s)	233, 260
BtuMI	TCGCGA	1 cut(s)	1072
Cac8I	GCNNGC	1 cut(s)	411
CciI	TCATGA	3 cut(s)	186, 567, 933
CfoI	GCGC	3 cut(s)	98, 144, 868
Cfr13I	GGNCC	2 cut(s)	352, 1016
CseI	GACGC	1 cut(s)	1056
Csp6I	GTAC	4 cut(s)	176, 713, 886, 908
CviAII	CATG	5 cut(s)	139, 187, 410, 568, 934
CviQI	GTAC	4 cut(s)	176, 713, 886, 908
DdeI	CTNAG	4 cut(s)	120, 618, 720, 913
DpnI	GATC	2 cut(s)	572, 831
DpnII	GATC	2 cut(s)	570, 829
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	372, 810
EarI	CTCTTC	2 cut(s)	372, 810
Eco130I	CCWWGG	1 cut(s)	833
Eco47I	GGWCC	1 cut(s)	352
Eco47III	AGCGCT	1 cut(s)	867
Eco57I	CTGAAG	1 cut(s)	591
EcoRI	GAATTC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	833
ErhI	CCWWGG	1 cut(s)	833
FaeI	CATG	5 cut(s)	142, 190, 413, 571, 937
FaqI	GGGAC	1 cut(s)	1065
FatI	CATG	5 cut(s)	138, 186, 409, 567, 933
FauI	CCCGC	2 cut(s)	272, 851
FauNDI	CATATG	1 cut(s)	853
Fnu4HI	GCNGC	3 cut(s)	105, 321, 692
FokI	GGATG	3 cut(s)	171, 401, 1011
Fsp4HI	GCNGC	3 cut(s)	105, 321, 692
FspBI	CTAG	1 cut(s)	332
FspI	TGCGCA	1 cut(s)	143
GlaI	GCGC	3 cut(s)	97, 143, 867
GluI	GCNGC	3 cut(s)	105, 321, 692
GsuI	CTGGAG	1 cut(s)	1029
HaeII	RGCGCY	2 cut(s)	99, 869
HaeIII	GGCC	3 cut(s)	83, 296, 1018
HgaI	GACGC	1 cut(s)	1056
HhaI	GCGC	3 cut(s)	98, 144, 868
Hin1I	GRCGYC	1 cut(s)	1067
Hin1II	CATG	5 cut(s)	142, 190, 413, 571, 937
Hin6I	GCGC	3 cut(s)	96, 142, 866
HinP1I	GCGC	3 cut(s)	96, 142, 866
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	4 cut(s)	14, 133, 602, 838
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	4 cut(s)	291, 721, 736, 843
Hpy188III	TCNNGA	9 cut(s)	47, 130, 187, 547, 568, 574, 877, 934, 1071
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	2 cut(s)	972, 1072
HpyAV	CCTTC	1 cut(s)	739
HpyCH4III	ACNGT	4 cut(s)	398, 649, 717, 1045
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	4 cut(s)	55, 320, 794, 992
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 110, 800
HpyF3I	CTNAG	4 cut(s)	120, 618, 720, 913
HpySE526I	ACGT	1 cut(s)	495
Hsp92I	GRCGYC	1 cut(s)	1067
Hsp92II	CATG	5 cut(s)	142, 190, 413, 571, 937
HspAI	GCGC	3 cut(s)	96, 142, 866
KpnI	GGTACC	1 cut(s)	911
Kzo9I	GATC	2 cut(s)	570, 829
LguI	GCTCTTC	1 cut(s)	810
Lsp1109I	GCAGC	3 cut(s)	91, 332, 678
LweI	GCATC	2 cut(s)	870, 1033
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	3 cut(s)	209, 503, 1045
MalI	GATC	2 cut(s)	572, 831
MboI	GATC	2 cut(s)	570, 829
MboII	GAAGA	7 cut(s)	79, 320, 389, 597, 601, 641, 797
MfeI	CAATTG	1 cut(s)	987
MluCI	AATT	8 cut(s)	34, 153, 424, 512, 592, 870, 941, 987
MlyI	GAGTC	1 cut(s)	847
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	9 cut(s)	194, 227, 373, 376, 379, 656, 831, 922, 1038
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	1 cut(s)	704
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	124
MunI	CAATTG	1 cut(s)	987
Mva1269I	GAATGC	3 cut(s)	489, 684, 992
MvnI	CGCG	1 cut(s)	1072
MwoI	GCNNNNNNNGC	3 cut(s)	104, 110, 800
NdeI	CATATG	1 cut(s)	853
NdeII	GATC	2 cut(s)	570, 829
NlaIII	CATG	5 cut(s)	142, 190, 413, 571, 937
NlaIV	GGNNCC	2 cut(s)	909, 1017
NmuCI	GTSAC	1 cut(s)	503
NruI	TCGCGA	1 cut(s)	1072
NsbI	TGCGCA	1 cut(s)	143
NspI	RCATGY	2 cut(s)	142, 413
PaeI	GCATGC	1 cut(s)	413
PagI	TCATGA	3 cut(s)	186, 567, 933
PciSI	GCTCTTC	1 cut(s)	810
PctI	GAATGC	3 cut(s)	489, 684, 992
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	3 cut(s)	14, 133, 602
PflFI	GACNNNGTC	1 cut(s)	1077
PkrI	GCNGC	3 cut(s)	106, 322, 693
PleI	GAGTC	1 cut(s)	846
PpsI	GAGTC	1 cut(s)	846
PspN4I	GGNNCC	2 cut(s)	909, 1017
PspPI	GGNCC	2 cut(s)	352, 1016
PsyI	GACNNNGTC	1 cut(s)	1077
PvuII	CAGCTG	1 cut(s)	124
RruI	TCGCGA	1 cut(s)	1072
RsaI	GTAC	4 cut(s)	177, 714, 887, 909
RsaNI	GTAC	4 cut(s)	176, 713, 886, 908
RseI	CAYNNNNRTG	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	1 cut(s)	704
SatI	GCNGC	3 cut(s)	105, 321, 692
Sau3AI	GATC	2 cut(s)	570, 829
Sau96I	GGNCC	2 cut(s)	352, 1016
ScaI	AGTACT	1 cut(s)	177
SchI	GAGTC	1 cut(s)	847
SfaNI	GCATC	2 cut(s)	870, 1033
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	8 cut(s)	34, 153, 424, 512, 592, 870, 941, 987
SsiI	CCGC	4 cut(s)	279, 524, 753, 858
SspMI	CTAG	1 cut(s)	332
StyI	CCWWGG	1 cut(s)	833
TaaI	ACNGT	4 cut(s)	398, 649, 717, 1045
TaiI	ACGT	1 cut(s)	498
TasI	AATT	8 cut(s)	34, 153, 424, 512, 592, 870, 941, 987
TatI	WGTACW	2 cut(s)	175, 885
TfiI	GAWTC	3 cut(s)	14, 133, 602
Tru1I	TTAA	1 cut(s)	704
Tru9I	TTAA	1 cut(s)	704
TscAI	CASTG	2 cut(s)	240, 260
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	3 cut(s)	104, 320, 691
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	7 cut(s)	274, 390, 435, 642, 720, 922, 985
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	240, 260
Tth111I	GACNNNGTC	1 cut(s)	1077
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	3 cut(s)	424, 512, 592
XceI	RCATGY	2 cut(s)	142, 413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.