Prupe.4G077600_v2.0.a1

Tobamovirus multiplication protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001716
Physical Location & Seq
Reverse (-)
3780297 .. 3785913
5617 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G077600.2

Sequence Viewer

Length: 1086 bp
ATGTTTGAATTGAGAGAAGGCTCTTGCTTTCCAAGGGTCTTGGTGGGTGTGAATGTGGGTCTTGCTCTCGTTGATGGCATTATAGCTGTTCTTGCATTTTGTCAGTTAATCAGGATTCACTCGAGGAATTCACAACTTGGCTGGACTCGCCAAAAAGTTTTTCATCTGTTGATTGGCTCTTCTAATTTGGGTTGCTTAGTTTATTTTGTATTAACTCTTTTTGCTGCTTGCAAGGGGTGGCAATGTTGGTCTAACTCTTGTGGTTTTAGCCTCATGGCATTACCCAAAATTCTGTTTTTTGCTGCATTTCTTCTACTTTTATCATTCTGGGTTGACCTGTGCCATCAGGCAGATGATGAGGATGAGGAGGATGAAGGGAGTTTTCATGAAGCTTTGTTGGAGAAGACATTTAGCAAACGGAATTCATTGGAAACAGATAGTCATAGAAACTGTTTTCCTCTGCGCTTTGTTCATATTGGAAGCCGCCAGAGAATTGTAATTCTGGTTACCGTGGTAGTTTTTGTTATAATGGTGGCATGTGCAGTGATAATCTGGATCGGGATGGGAAAAAATCCTATTGATTCTGCAGTGGTGGCTCGGGTATACGTAGATCTCTTTGCAATAGCAATACTATTGTTAGGAGGAGCATTAGCATGTTATGGAGTCCTATTATGCTTGAGAATGAGAAACGTTAGATCTGAGAGAGCTTCTTCTGAGATGTGGAAGGTTGCAGGTTTATCTGTTGTTTCCATTCTATGTTTCGCCTCAAGCTCCTTCGTGGCTCTATTAACTGATATTCCTATGCTTTACCATTGGCATCAACAGCGTTTGAATGATGTTTATACTTCTCTTTTACTGATTTTATATTATTTTGTAGGTTCATCAATACCGTCAGCATTTGTACTATGGATCATGAGAGAATTACCACCCTCGATAACAGCTAACATACGAGAAGAACCAACTACATTAACTTTCGTCAGTGATGGTTCCACATCATTACAACATCCTCAGAGCTGGACTACTGCAATGAGCTTGCGGAACCAGTTTGGGTTTCAGGTGCAGATATCAAGAGCAAGTCCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1084

Protein Analysis

362

Amino Acids

40.42

Weight (kDa)

7.55

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 527
Acc36I ACCTGC 1 cut(s) 722
AccI GTMKAC 1 cut(s) 603
AciI CCGC 2 cut(s) 484, 1036
AclI AACGTT 1 cut(s) 690
AclWI GGATC 2 cut(s) 563, 917
AcsI RAATTY 3 cut(s) 127, 288, 421
AfaI GTAC 1 cut(s) 903
AgsI TTSAA 2 cut(s) 8, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AluBI AGCT 7 cut(s) 86, 392, 707, 771, 941, 1014, 1032
AluI AGCT 7 cut(s) 86, 392, 707, 771, 941, 1014, 1032
AlwI GGATC 2 cut(s) 563, 917
Ama87I CYCGRG 2 cut(s) 121, 597
ApeKI GCWGC 2 cut(s) 224, 302
ApoI RAATTY 3 cut(s) 127, 288, 421
AspLEI GCGC 1 cut(s) 465
AvaI CYCGRG 2 cut(s) 121, 597
BbsI GAAGAC 1 cut(s) 410
BbvI GCAGC 2 cut(s) 211, 289
BccI CCATC 4 cut(s) 68, 351, 556, 977
BfmI CTRYAG 1 cut(s) 585
BfuAI ACCTGC 1 cut(s) 722
BglII AGATCT 2 cut(s) 610, 695
BisI GCNGC 3 cut(s) 225, 303, 484
BlsI GCNGC 3 cut(s) 226, 304, 485
BmeT110I CYCGRG 2 cut(s) 121, 597
BmiI GGNNCC 2 cut(s) 988, 1040
BmsI GCATC 1 cut(s) 826
BpiI GAAGAC 1 cut(s) 410
BpuEI CTTGAG 2 cut(s) 697, 751
BsaAI YACGTR 1 cut(s) 607
BsaJI CCNNGG 2 cut(s) 32, 510
Bse1I ACTGG 1 cut(s) 1042
Bse3DI GCAATG 2 cut(s) 248, 1032
BseDI CCNNGG 2 cut(s) 32, 510
BseGI GGATG 4 cut(s) 367, 376, 567, 1003
BseMI GCAATG 2 cut(s) 248, 1032
BseMII CTCAG 3 cut(s) 690, 705, 1022
BseNI ACTGG 1 cut(s) 1042
BseRI GAGGAG 2 cut(s) 380, 657
BseXI GCAGC 2 cut(s) 211, 289
BsgI GTGCAG 2 cut(s) 561, 1079
BsiHKCI CYCGRG 2 cut(s) 121, 597
BslFI GGGAC 1 cut(s) 1062
BsmFI GGGAC 1 cut(s) 1062
BsoBI CYCGRG 2 cut(s) 121, 597
Bsp143I GATC 4 cut(s) 555, 610, 695, 909
BspACI CCGC 2 cut(s) 484, 1036
BspCNI CTCAG 3 cut(s) 691, 706, 1021
BspHI TCATGA 2 cut(s) 385, 912
BspLI GGNNCC 2 cut(s) 988, 1040
BspMAI CTGCAG 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 722
BspPI GGATC 2 cut(s) 563, 917
BspQI GCTCTTC 1 cut(s) 184
BsrDI GCAATG 2 cut(s) 248, 1032
BsrI ACTGG 1 cut(s) 1042
BssECI CCNNGG 2 cut(s) 32, 510
BssMI GATC 4 cut(s) 555, 610, 695, 909
BssNAI GTATAC 1 cut(s) 604
BssT1I CCWWGG 1 cut(s) 32
Bst1107I GTATAC 1 cut(s) 604
Bst4CI ACNGT 3 cut(s) 452, 511, 891
Bst6I CTCTTC 1 cut(s) 184
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 2 cut(s) 229, 1034
BstDEI CTNAG 4 cut(s) 196, 699, 714, 1008
BstDSI CCRYGG 1 cut(s) 510
BstEII GGTNACC 1 cut(s) 505
BstF5I GGATG 4 cut(s) 367, 376, 567, 1003
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 4 cut(s) 558, 613, 698, 912
BstMBI GATC 4 cut(s) 555, 610, 695, 909
BstMWI GCNNNNNNNGC 4 cut(s) 92, 147, 593, 823
BstNSI RCATGY 2 cut(s) 540, 657
BstPI GGTNACC 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 585
BstSNI TACGTA 1 cut(s) 607
BstV1I GCAGC 2 cut(s) 211, 289
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 2 cut(s) 610, 695
BstYI RGATCY 2 cut(s) 610, 695
BstZ17I GTATAC 1 cut(s) 604
BtgI CCRYGG 1 cut(s) 510
BtsCI GGATG 4 cut(s) 367, 376, 567, 1003
BtsI GCAGTG 2 cut(s) 549, 594
BtsIMutI CAGTG 3 cut(s) 549, 594, 985
BveI ACCTGC 1 cut(s) 722
Cac8I GCNNGC 2 cut(s) 229, 1034
CciI TCATGA 2 cut(s) 385, 912
CfoI GCGC 1 cut(s) 465
Csp6I GTAC 1 cut(s) 902
CviAII CATG 5 cut(s) 274, 386, 537, 654, 913
CviQI GTAC 1 cut(s) 902
DdeI CTNAG 4 cut(s) 196, 699, 714, 1008
DpnI GATC 4 cut(s) 557, 612, 697, 911
DpnII GATC 4 cut(s) 555, 610, 695, 909
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Eco105I TACGTA 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 32
Eco32I GATATC 1 cut(s) 1065
Eco88I CYCGRG 2 cut(s) 121, 597
Eco91I GGTNACC 1 cut(s) 505
EcoO65I GGTNACC 1 cut(s) 505
EcoRI GAATTC 2 cut(s) 127, 421
EcoRV GATATC 1 cut(s) 1065
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 5 cut(s) 277, 389, 540, 657, 916
FaqI GGGAC 1 cut(s) 1062
FatI CATG 5 cut(s) 273, 385, 536, 653, 912
FblI GTMKAC 1 cut(s) 603
Fnu4HI GCNGC 3 cut(s) 225, 303, 484
FokI GGATG 4 cut(s) 374, 383, 574, 990
Fsp4HI GCNGC 3 cut(s) 225, 303, 484
GlaI GCGC 1 cut(s) 464
GluI GCNGC 3 cut(s) 225, 303, 484
HhaI GCGC 1 cut(s) 465
Hin1II CATG 5 cut(s) 277, 389, 540, 657, 916
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 4 cut(s) 115, 145, 581, 663
Hpy166II GTNNAC 2 cut(s) 334, 604
Hpy188I TCNGA 3 cut(s) 700, 715, 1011
Hpy188III TCNNGA 6 cut(s) 112, 386, 553, 559, 913, 1068
Hpy8I GTNNAC 2 cut(s) 334, 604
HpyAV CCTTC 4 cut(s) 11, 368, 718, 784
HpyCH4III ACNGT 3 cut(s) 452, 511, 891
HpyCH4IV ACGT 2 cut(s) 606, 690
HpyCH4V TGCA 9 cut(s) 95, 231, 305, 542, 587, 620, 731, 1025, 1060
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 147, 593, 823
HpyF3I CTNAG 4 cut(s) 196, 699, 714, 1008
HpySE526I ACGT 2 cut(s) 606, 690
Hsp92II CATG 5 cut(s) 277, 389, 540, 657, 916
HspAI GCGC 1 cut(s) 463
Kzo9I GATC 4 cut(s) 555, 610, 695, 909
LguI GCTCTTC 1 cut(s) 184
LmnI GCTCC 2 cut(s) 644, 776
Lsp1109I GCAGC 2 cut(s) 211, 289
LweI GCATC 1 cut(s) 826
MaeII ACGT 2 cut(s) 606, 690
MaeIII GTNAC 1 cut(s) 505
MalI GATC 4 cut(s) 557, 612, 697, 911
MboI GATC 4 cut(s) 555, 610, 695, 909
MboII GAAGA 5 cut(s) 171, 302, 415, 702, 965
MflI RGATCY 2 cut(s) 610, 695
MluCI AATT 8 cut(s) 8, 127, 184, 288, 421, 492, 498, 920
MlyI GAGTC 2 cut(s) 139, 672
MmeI TCCRAC 1 cut(s) 378
MseI TTAA 4 cut(s) 107, 212, 788, 968
MslI CAYNNNNRTG 1 cut(s) 652
MwoI GCNNNNNNNGC 4 cut(s) 92, 147, 593, 823
NdeII GATC 4 cut(s) 555, 610, 695, 909
NlaIII CATG 5 cut(s) 277, 389, 540, 657, 916
NlaIV GGNNCC 2 cut(s) 988, 1040
NspI RCATGY 2 cut(s) 540, 657
PaeR7I CTCGAG 1 cut(s) 121
PagI TCATGA 2 cut(s) 385, 912
PciSI GCTCTTC 1 cut(s) 184
PfeI GAWTC 2 cut(s) 115, 581
PkrI GCNGC 3 cut(s) 226, 304, 485
PleI GAGTC 2 cut(s) 139, 671
PpsI GAGTC 2 cut(s) 139, 671
Ppu21I YACGTR 1 cut(s) 607
PsiI TTATAA 1 cut(s) 527
Psp1406I AACGTT 1 cut(s) 690
PspEI GGTNACC 1 cut(s) 505
PspN4I GGNNCC 2 cut(s) 988, 1040
PspXI VCTCGAGB 1 cut(s) 121
PstI CTGCAG 1 cut(s) 589
PsuI RGATCY 2 cut(s) 610, 695
RsaI GTAC 1 cut(s) 903
RsaNI GTAC 1 cut(s) 902
RseI CAYNNNNRTG 1 cut(s) 652
SapI GCTCTTC 1 cut(s) 184
SaqAI TTAA 4 cut(s) 107, 212, 788, 968
SatI GCNGC 3 cut(s) 225, 303, 484
Sau3AI GATC 4 cut(s) 555, 610, 695, 909
SchI GAGTC 2 cut(s) 139, 672
SfaNI GCATC 1 cut(s) 826
SfcI CTRYAG 1 cut(s) 585
Sfr274I CTCGAG 1 cut(s) 121
SlaI CTCGAG 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 652
SmlI CTYRAG 3 cut(s) 121, 676, 766
SmoI CTYRAG 3 cut(s) 121, 676, 766
SnaBI TACGTA 1 cut(s) 607
Sse9I AATT 8 cut(s) 8, 127, 184, 288, 421, 492, 498, 920
SsiI CCGC 2 cut(s) 484, 1036
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 3 cut(s) 452, 511, 891
TaiI ACGT 2 cut(s) 609, 693
TaqI TCGA 2 cut(s) 122, 932
TasI AATT 8 cut(s) 8, 127, 184, 288, 421, 492, 498, 920
TatI WGTACW 1 cut(s) 901
TauI GCSGC 1 cut(s) 486
TfiI GAWTC 2 cut(s) 115, 581
Tru1I TTAA 4 cut(s) 107, 212, 788, 968
Tru9I TTAA 4 cut(s) 107, 212, 788, 968
TscAI CASTG 3 cut(s) 549, 594, 985
TseI GCWGC 2 cut(s) 224, 302
TspDTI ATGAA 7 cut(s) 152, 374, 387, 402, 414, 461, 870
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 3 cut(s) 549, 594, 985
XapI RAATTY 3 cut(s) 127, 288, 421
XceI RCATGY 2 cut(s) 540, 657
XhoI CTCGAG 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.