Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Reverse (-)

10301588 .. 10307584

Gene Structure 5997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032021

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTTTGAATTGAGAGAAGGGTCTTGTTTGCCAAAGGTGTTGGTGGGTGTGAATGTGGGTCTTGCTCTTGTTGATGCCATTATAGCTGCCCTTGCATTTTATCAGTTAATTAGGATTCACTCGAGGAATTCACAACTTGGATGGACTCGCCAAAAAGTTTTTCATCTGTTGATTGGCTCTTCGAATTTGGGTTGCTTAATTTATCTTGTATTAACTCTTTTTGCTGCTTGCAAGGGGTGGAAATGTTGGTCCAACTCTTGTGGTTTTAGCCTCATGGCGTTACCCAAAATTTTGTTTTTTGCTGCATTCCTTCTACTTTTATCGTTCTGGGTTGACCTGTGCCATCAGGCAGATGATGAAGATGAGGAGGATGAAGGTAGTTTTCAGGAAGTTTTGTTGGAGAAGACATTTAGCAAAACTAATTCATTGGACACTGATAGTCATAGAAGGTGTTTTCCTCTGCGAATCCATATTGGAAGCCGCCAGAAAGTTGTAGTTTTGGTTACTGTGCTAGTTTTTATTATAATGATCGCGTGTGCTGTGATAATCTGGATCGGGATGGGAAAAAATCCCATTGATTCTGCTGTGGTAGCTCGGGTATATGTAGATCTTTTTGCAATAGTAACACTATTATTGGGAGGAGCATTGGCATGTTATGGACTTCTATTATGCTTGAGAATGAGAAAAGTTAGATCTGAGAGAGCCTCTTCTGAGATGTGGAAGGTTGCAGGTTTAGCTGTCGTTTCCGTTCTATGTTTCGCCTCAAGTGCTTTCGTGGCTCTATTAACTGATATTCCTATGCTTTACCATGACTATCAACAGCCTGTGAATGGTGTTTATACCGCGCTTTTGCTGATTTTATATTATTTTGTAGGTTCATCAATACCCTCAGCGTATGTATTATGGGTCATGAGAGAATTGCCACCCTCAATAGCAGCTAACATACGACAAGAAGAAGAAGAATCAACTACATTAACATTCATCAGTGATGATTCCAACGTATTACCACATCCTCAGAGCTGGACTGCAGCAATGAGCTTGCGGAACGAGGTGCAGGTATCAAGAGTAAGTCCGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

360

Amino Acids

39.95

Weight (kDa)

6.38

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	17 - 118	3.5e-14	THH1/TOM1/TOM3 domain
THH1_TOM1-3_dom	PF06454	170 - 312	6.1e-09	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
Acc36I	ACCTGC	2 cut(s)	719, 1045
AccII	CGCG	2 cut(s)	533, 845
AciI	CCGC	3 cut(s)	481, 843, 1042
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	3 cut(s)	127, 184, 288
AfiI	CCNNNNNNNGG	1 cut(s)	830
AgsI	TTSAA	1 cut(s)	8
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AluBI	AGCT	6 cut(s)	86, 593, 737, 938, 1020, 1038
AluI	AGCT	6 cut(s)	86, 593, 737, 938, 1020, 1038
AlwI	GGATC	1 cut(s)	560
Ama87I	CYCGRG	2 cut(s)	121, 594
ApeKI	GCWGC	5 cut(s)	86, 224, 302, 935, 1028
ApoI	RAATTY	3 cut(s)	127, 184, 288
AspLEI	GCGC	1 cut(s)	847
AspS9I	GGNCC	1 cut(s)	249
AsuII	TTCGAA	1 cut(s)	182
AvaI	CYCGRG	2 cut(s)	121, 594
AvaII	GGWCC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	410
BbvCI	CCTCAGC	1 cut(s)	889
BbvI	GCAGC	5 cut(s)	73, 211, 289, 947, 1040
BccI	CCATC	3 cut(s)	135, 351, 553
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	1026
BfuAI	ACCTGC	2 cut(s)	719, 1045
BglII	AGATCT	2 cut(s)	607, 692
BisI	GCNGC	6 cut(s)	87, 225, 303, 481, 936, 1029
BlsI	GCNGC	6 cut(s)	88, 226, 304, 482, 937, 1030
Bme18I	GGWCC	1 cut(s)	249
BmeT110I	CYCGRG	2 cut(s)	121, 594
BmgT120I	GGNCC	1 cut(s)	249
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	410
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
Bpu10I	CCTNAGC	1 cut(s)	889
Bpu14I	TTCGAA	1 cut(s)	182
BpuEI	CTTGAG	2 cut(s)	694, 748
Bsc4I	CCNNNNNNNGG	1 cut(s)	830
Bse3DI	GCAATG	1 cut(s)	1038
BseGI	GGATG	4 cut(s)	146, 376, 564, 1009
BseLI	CCNNNNNNNGG	1 cut(s)	830
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	4 cut(s)	687, 702, 903, 1028
BseRI	GAGGAG	2 cut(s)	380, 654
BseXI	GCAGC	5 cut(s)	73, 211, 289, 947, 1040
BsgI	GTGCAG	1 cut(s)	1073
Bsh1236I	CGCG	2 cut(s)	533, 845
BsiHKCI	CYCGRG	2 cut(s)	121, 594
BslI	CCNNNNNNNGG	1 cut(s)	830
BsmI	GAATGC	1 cut(s)	305
BsoBI	CYCGRG	2 cut(s)	121, 594
Bsp119I	TTCGAA	1 cut(s)	182
Bsp143I	GATC	4 cut(s)	528, 552, 607, 692
BspACI	CCGC	3 cut(s)	481, 843, 1042
BspCNI	CTCAG	4 cut(s)	688, 703, 902, 1027
BspFNI	CGCG	2 cut(s)	533, 845
BspHI	TCATGA	1 cut(s)	909
BspMAI	CTGCAG	1 cut(s)	1030
BspMI	ACCTGC	2 cut(s)	719, 1045
BspPI	GGATC	1 cut(s)	560
BspQI	GCTCTTC	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	1038
BssMI	GATC	4 cut(s)	528, 552, 607, 692
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	2 cut(s)	184, 712
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	229, 1040
BstDEI	CTNAG	4 cut(s)	696, 711, 889, 1014
BstF5I	GGATG	4 cut(s)	146, 376, 564, 1009
BstFNI	CGCG	2 cut(s)	533, 845
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	4 cut(s)	531, 555, 610, 695
BstMBI	GATC	4 cut(s)	528, 552, 607, 692
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 590, 734, 767, 776
BstNSI	RCATGY	1 cut(s)	654
BstSFI	CTRYAG	1 cut(s)	1026
BstUI	CGCG	2 cut(s)	533, 845
BstV1I	GCAGC	5 cut(s)	73, 211, 289, 947, 1040
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	2 cut(s)	607, 692
BstYI	RGATCY	2 cut(s)	607, 692
BtsCI	GGATG	4 cut(s)	146, 376, 564, 1009
BtsIMutI	CAGTG	2 cut(s)	432, 991
BveI	ACCTGC	2 cut(s)	719, 1045
Cac8I	GCNNGC	2 cut(s)	229, 1040
CciI	TCATGA	1 cut(s)	909
CfoI	GCGC	1 cut(s)	847
Cfr13I	GGNCC	1 cut(s)	249
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	4 cut(s)	274, 651, 809, 910
DdeI	CTNAG	4 cut(s)	696, 711, 889, 1014
DpnI	GATC	4 cut(s)	530, 554, 609, 694
DpnII	GATC	4 cut(s)	528, 552, 607, 692
Eam1104I	CTCTTC	2 cut(s)	184, 712
EarI	CTCTTC	2 cut(s)	184, 712
Eco47I	GGWCC	1 cut(s)	249
Eco88I	CYCGRG	2 cut(s)	121, 594
EcoRI	GAATTC	1 cut(s)	127
FaeI	CATG	4 cut(s)	277, 654, 812, 913
FatI	CATG	4 cut(s)	273, 650, 808, 909
Fnu4HI	GCNGC	6 cut(s)	87, 225, 303, 481, 936, 1029
FokI	GGATG	4 cut(s)	153, 383, 571, 996
Fsp4HI	GCNGC	6 cut(s)	87, 225, 303, 481, 936, 1029
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	6 cut(s)	87, 225, 303, 481, 936, 1029
HhaI	GCGC	1 cut(s)	847
Hin1II	CATG	4 cut(s)	277, 654, 812, 913
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	6 cut(s)	115, 145, 465, 578, 962, 992
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	697, 712, 1017, 1074
Hpy188III	TCNNGA	5 cut(s)	386, 550, 556, 910, 1062
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	5 cut(s)	11, 320, 368, 441, 715
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	1 cut(s)	999
HpyCH4V	TGCA	7 cut(s)	95, 231, 305, 617, 728, 1028, 1054
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 590, 734, 767, 776
HpyF3I	CTNAG	4 cut(s)	696, 711, 889, 1014
HpySE526I	ACGT	1 cut(s)	999
Hsp92II	CATG	4 cut(s)	277, 654, 812, 913
HspAI	GCGC	1 cut(s)	845
Kzo9I	GATC	4 cut(s)	528, 552, 607, 692
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	641
Lsp1109I	GCAGC	5 cut(s)	73, 211, 289, 947, 1040
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	999
MaeIII	GTNAC	3 cut(s)	279, 502, 622
MalI	GATC	4 cut(s)	530, 554, 609, 694
MboI	GATC	4 cut(s)	528, 552, 607, 692
MboII	GAAGA	7 cut(s)	171, 371, 415, 699, 965, 968, 971
MflI	RGATCY	2 cut(s)	607, 692
MluCI	AATT	8 cut(s)	8, 108, 127, 184, 198, 288, 421, 917
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	3 cut(s)	276, 378, 1020
MseI	TTAA	5 cut(s)	107, 197, 212, 785, 974
MslI	CAYNNNNRTG	1 cut(s)	649
Mva1269I	GAATGC	1 cut(s)	305
MvnI	CGCG	2 cut(s)	533, 845
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 590, 734, 767, 776
NdeII	GATC	4 cut(s)	528, 552, 607, 692
NlaIII	CATG	4 cut(s)	277, 654, 812, 913
NspI	RCATGY	1 cut(s)	654
NspV	TTCGAA	1 cut(s)	182
PaeR7I	CTCGAG	1 cut(s)	121
PagI	TCATGA	1 cut(s)	909
PciSI	GCTCTTC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	305
PfeI	GAWTC	5 cut(s)	115, 465, 578, 962, 992
PkrI	GCNGC	6 cut(s)	88, 226, 304, 482, 937, 1030
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PsiI	TTATAA	1 cut(s)	524
PspPI	GGNCC	1 cut(s)	249
PspXI	VCTCGAGB	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	1030
PsuI	RGATCY	2 cut(s)	607, 692
RseI	CAYNNNNRTG	1 cut(s)	649
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	5 cut(s)	107, 197, 212, 785, 974
SatI	GCNGC	6 cut(s)	87, 225, 303, 481, 936, 1029
Sau3AI	GATC	4 cut(s)	528, 552, 607, 692
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	1026
Sfr274I	CTCGAG	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	1 cut(s)	249
SlaI	CTCGAG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	649
SmlI	CTYRAG	3 cut(s)	121, 673, 763
SmoI	CTYRAG	3 cut(s)	121, 673, 763
Sse9I	AATT	8 cut(s)	8, 108, 127, 184, 198, 288, 421, 917
SsiI	CCGC	3 cut(s)	481, 843, 1042
SspMI	CTAG	1 cut(s)	512
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	1 cut(s)	1002
TaqI	TCGA	2 cut(s)	122, 182
TasI	AATT	8 cut(s)	8, 108, 127, 184, 198, 288, 421, 917
TauI	GCSGC	1 cut(s)	483
TfiI	GAWTC	5 cut(s)	115, 465, 578, 962, 992
Tru1I	TTAA	5 cut(s)	107, 197, 212, 785, 974
Tru9I	TTAA	5 cut(s)	107, 197, 212, 785, 974
TscAI	CASTG	2 cut(s)	439, 991
TseI	GCWGC	5 cut(s)	86, 224, 302, 935, 1028
TspDTI	ATGAA	6 cut(s)	152, 372, 387, 414, 867, 970
TspGWI	ACGGA	1 cut(s)	736
TspRI	CASTG	2 cut(s)	439, 991
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	3 cut(s)	127, 184, 288
XceI	RCATGY	1 cut(s)	654
XhoI	CTCGAG	1 cut(s)	121
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.