Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014653.1

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 6006

Gene Structure 6006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014653.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ctgagacctgcaagcgaagcccagactcgattccggcgtggagcttcggagcttcccgaacatctgacaaataaaactggcgaagcccagacccgattcctacgtggagagtttcccggacatctgacgaacaaaaccggcgaagcccagaggggttgggatcgtggagttggatggcgtcatcctctggtggtccgacggtgggacagagtggcggtggtggaggtcgacatcgacggtggaatgctgggcgtgttaattaggattcactcgaggaattcacaaattggatggactcgccaaaaagtttttcatctgttgattggctcttcgaatttgggttgcttaatttatcttgtattaactctttttgctgcttgcaaggggtggaaatgttggtccaactcttgtggttttagcctcatggctttacccaaaattttgttttttgctgcattccttctacttttatcgttctgggttgacctgtgccatcaggcagatgacgaagatgaggaggatgaaggtagttttcaggaagctttgttggagaagacatttagcaaaactaattcattggacactgatagtcatagaaggtgttttcctctgcgaatccatattggaagccgccagaaaattgtagttttggttactgtgctagtttttattataatgatcgtatgtgctgtgataatctggatcgggatgggaaaaaatcccattgattctactgtggtagctcgggtatatgtagatctttttgcaatagtaacactattattgggaggagcattggcatgttatggacttctattatgcttgagaatgagaaaagttaggtctgagagagcctcttctgagatgtggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

291

Amino Acids

32.88

Weight (kDa)

9.14

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	674
Acc36I	ACCTGC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	2 cut(s)	215, 631
AclWI	GGATC	2 cut(s)	168, 710
AcsI	RAATTY	3 cut(s)	277, 334, 438
AcyI	GRCGYC	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AluBI	AGCT	4 cut(s)	44, 52, 542, 743
AluI	AGCT	4 cut(s)	44, 52, 542, 743
AlwI	GGATC	2 cut(s)	168, 710
Ama87I	CYCGRG	2 cut(s)	271, 744
ApeKI	GCWGC	2 cut(s)	374, 452
ApoI	RAATTY	3 cut(s)	277, 334, 438
AspS9I	GGNCC	2 cut(s)	193, 399
AsuC2I	CCSGG	1 cut(s)	117
AsuII	TTCGAA	1 cut(s)	332
AvaI	CYCGRG	2 cut(s)	271, 744
AvaII	GGWCC	2 cut(s)	193, 399
BbsI	GAAGAC	1 cut(s)	560
BbvI	GCAGC	2 cut(s)	361, 439
BccI	CCATC	4 cut(s)	168, 285, 501, 703
BcnI	CCSGG	1 cut(s)	117
BfaI	CTAG	1 cut(s)	662
BfuAI	ACCTGC	1 cut(s)	16
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	3 cut(s)	375, 453, 631
BlsI	GCNGC	3 cut(s)	376, 454, 632
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	193, 399
BmeT110I	CYCGRG	2 cut(s)	271, 744
BmgT120I	GGNCC	2 cut(s)	193, 399
BmrFI	CCNGG	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	560
BplI	GAGNNNNNCTC	2 cut(s)	839, 871
Bpu14I	TTCGAA	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	844
BpuMI	CCSGG	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	82
BseGI	GGATG	5 cut(s)	179, 181, 296, 526, 714
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	837, 852
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	530, 804
BseXI	GCAGC	2 cut(s)	361, 439
BseYI	CCCAGC	1 cut(s)	247
BsiHKCI	CYCGRG	2 cut(s)	271, 744
BsiSI	CCGG	3 cut(s)	34, 117, 138
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	2 cut(s)	249, 455
BsoBI	CYCGRG	2 cut(s)	271, 744
Bsp119I	TTCGAA	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	160, 678, 702, 757
BspACI	CCGC	2 cut(s)	215, 631
BspCNI	CTCAG	2 cut(s)	838, 853
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	168, 710
BspQI	GCTCTTC	1 cut(s)	334
BspT104I	TTCGAA	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	4 cut(s)	160, 678, 702, 757
BssNI	GRCGYC	1 cut(s)	178
Bst4CI	ACNGT	4 cut(s)	201, 239, 658, 736
Bst6I	CTCTTC	2 cut(s)	334, 862
BstACI	GRCGYC	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	2 cut(s)	13, 379
BstDEI	CTNAG	3 cut(s)	2, 846, 861
BstF5I	GGATG	5 cut(s)	179, 181, 296, 526, 714
BstKTI	GATC	4 cut(s)	163, 681, 705, 760
BstMBI	GATC	4 cut(s)	160, 678, 702, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	804
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	361, 439
BstV2I	GAAGAC	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BtsCI	GGATG	5 cut(s)	179, 181, 296, 526, 714
BtsIMutI	CAGTG	1 cut(s)	582
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	13, 379
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	193, 399
CseI	GACGC	1 cut(s)	167
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	2 cut(s)	424, 801
DdeI	CTNAG	3 cut(s)	2, 846, 861
DpnI	GATC	4 cut(s)	162, 680, 704, 759
DpnII	GATC	4 cut(s)	160, 678, 702, 757
Eam1104I	CTCTTC	2 cut(s)	334, 862
EarI	CTCTTC	2 cut(s)	334, 862
Eco47I	GGWCC	2 cut(s)	193, 399
Eco88I	CYCGRG	2 cut(s)	271, 744
EcoRI	GAATTC	1 cut(s)	277
FaeI	CATG	2 cut(s)	427, 804
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	423, 800
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	375, 453, 631
FokI	GGATG	5 cut(s)	168, 186, 303, 533, 721
Fsp4HI	GCNGC	3 cut(s)	375, 453, 631
FspBI	CTAG	1 cut(s)	662
GluI	GCNGC	3 cut(s)	375, 453, 631
GsaI	CCCAGC	1 cut(s)	251
HapII	CCGG	3 cut(s)	34, 117, 138
HgaI	GACGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	427, 804
HincII	GTYRAC	2 cut(s)	229, 484
HindII	GTYRAC	2 cut(s)	229, 484
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	7 cut(s)	25, 30, 96, 265, 295, 615, 728
HpaII	CCGG	3 cut(s)	34, 117, 138
Hpy166II	GTNNAC	2 cut(s)	229, 484
Hpy188I	TCNGA	6 cut(s)	49, 66, 126, 197, 847, 862
Hpy188III	TCNNGA	4 cut(s)	56, 536, 700, 706
Hpy8I	GTNNAC	2 cut(s)	229, 484
Hpy99I	CGWCG	2 cut(s)	201, 239
HpyAV	CCTTC	3 cut(s)	470, 518, 591
HpyCH4III	ACNGT	4 cut(s)	201, 239, 658, 736
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	4 cut(s)	11, 381, 455, 767
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	3 cut(s)	2, 846, 861
HpySE526I	ACGT	1 cut(s)	103
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	427, 804
Kzo9I	GATC	4 cut(s)	160, 678, 702, 757
LguI	GCTCTTC	1 cut(s)	334
LmnI	GCTCC	3 cut(s)	41, 49, 791
Lsp1109I	GCAGC	2 cut(s)	361, 439
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	2 cut(s)	652, 772
MalI	GATC	4 cut(s)	162, 680, 704, 759
MboI	GATC	4 cut(s)	160, 678, 702, 757
MboII	GAAGA	4 cut(s)	321, 521, 565, 849
MflI	RGATCY	1 cut(s)	757
MluCI	AATT	8 cut(s)	258, 277, 285, 334, 348, 438, 571, 639
MlyI	GAGTC	2 cut(s)	19, 289
MmeI	TCCRAC	4 cut(s)	151, 220, 426, 528
MseI	TTAA	3 cut(s)	257, 347, 362
MslI	CAYNNNNRTG	1 cut(s)	799
MspI	CCGG	3 cut(s)	34, 117, 138
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	2 cut(s)	249, 455
MwoI	GCNNNNNNNGC	1 cut(s)	17
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	4 cut(s)	160, 678, 702, 757
NlaIII	CATG	2 cut(s)	427, 804
NspI	RCATGY	1 cut(s)	804
NspV	TTCGAA	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PctI	GAATGC	2 cut(s)	249, 455
PfeI	GAWTC	5 cut(s)	30, 96, 265, 615, 728
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	376, 454, 632
PleI	GAGTC	2 cut(s)	19, 289
PpsI	GAGTC	2 cut(s)	19, 289
Ppu21I	YACGTR	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	674
PspFI	CCCAGC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	193, 399
PspXI	VCTCGAGB	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	757
RseI	CAYNNNNRTG	1 cut(s)	799
SalI	GTCGAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	3 cut(s)	257, 347, 362
SatI	GCNGC	3 cut(s)	375, 453, 631
Sau3AI	GATC	4 cut(s)	160, 678, 702, 757
Sau96I	GGNCC	2 cut(s)	193, 399
SchI	GAGTC	2 cut(s)	19, 289
ScrFI	CCNGG	1 cut(s)	117
Sfr274I	CTCGAG	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	332
SinI	GGWCC	2 cut(s)	193, 399
SlaI	CTCGAG	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	799
SmlI	CTYRAG	2 cut(s)	271, 823
SmoI	CTYRAG	2 cut(s)	271, 823
Sse9I	AATT	8 cut(s)	258, 277, 285, 334, 348, 438, 571, 639
SsiI	CCGC	2 cut(s)	215, 631
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	4 cut(s)	201, 239, 658, 736
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	5 cut(s)	28, 228, 234, 272, 332
TasI	AATT	8 cut(s)	258, 277, 285, 334, 348, 438, 571, 639
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	5 cut(s)	30, 96, 265, 615, 728
Tru1I	TTAA	3 cut(s)	257, 347, 362
Tru9I	TTAA	3 cut(s)	257, 347, 362
TscAI	CASTG	1 cut(s)	589
TseI	GCWGC	2 cut(s)	374, 452
TspDTI	ATGAA	3 cut(s)	302, 537, 564
TspRI	CASTG	1 cut(s)	589
VpaK11BI	GGWCC	2 cut(s)	193, 399
XapI	RAATTY	3 cut(s)	277, 334, 438
XceI	RCATGY	1 cut(s)	804
XhoI	CTCGAG	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.