Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Reverse (-)

19206983 .. 19213546

Gene Structure 6564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G175100.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGATGTTCTTGGAGCTCCTAGTGGAAAAAAGTGATTGCTTTCCTTTGGACTTGCTTGTCTTCAACATAGCTTTGGCCTTCTTCAATGGCGTTCTTGCTGTAATTGCGTTTTCTCAGCTGGTCAGGATTCACATGCGCAATCGACAAAGTGGATGGACACGCCAAAAAGTACTCCACCTCATGATTGGCTCTTCTAACTTGGGTTACTTCATATATTTTACATCTACGTTGGTTGCAGCTTGTAAGAAGTGGTTTTGCTGGTCTAATGTCTGCGGGTTCATCCTAATGGCCTACCCCAAAATTCTGTTTCTCGCAGCTTTTCTTCTACTCCTATCCTTTTGGGTCGACCTTTGCCATCAGGCAAATGATGACGAGGAGGATGACGAGGACGATAGCATGCAGCAGGCCTTGTTAGAAAATTCAAAGAATAAACCTAATTCATCAAACAAAGATGGTCATCGGATTTGTTGTTCATTCCAAAGCATTCATGTTGGAAGTCACCAAAAATTTGTGATTGCGGTTGTTGTGCTTGTCCTTGTTCTGATGATGTCATTTGCTGTGGTAATCTGGATCGGTGTGGGTAAGAATCCCATTGATTCTTCAGCAGTGGCTCAGGCATATGAAGACTTTCTTGCTTTCACGGTTCTTTTATTAGGAGGAGCATTAGGTTGCTATGGCATCCTGCTATTTTGTAAGTTAAGGAAAGTACGGTCTGAGAAAGCTTCATCCGAAATGTGGAAGGTTGCTGGTTTGGCAATTACTTCTGTTATATGTTTTACGTCAAGTGCATTGGTAGCTCTTCTTACAAATATTCCTCTATATTGTCAGTGGAGTCTGAAAAAAACATATGGCGGAAAAGCGCTAGTTTTTCTGATTCTGTACTATTTTATGGGATCTTTGGTGCCCTCAACTTCTGTATTATGGATTGTAAGAGAATTGCCACCCCCAATCGCTAATCACCAAAGGGAACAATCAAGAACAATTACTTTTGTCAGCTATGCTGCAGTGGGCACACAGCGTCCACGTCGTTGGGCTACAGTAACAAGTTCAAATAATCAGGCATCACGAGCAAGTCCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

361

Amino Acids

40.26

Weight (kDa)

8.91

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc16I	TGCGCA	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	901
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	3 cut(s)	273, 518, 852
AclWI	GGATC	2 cut(s)	578, 901
AcsI	RAATTY	3 cut(s)	300, 418, 506
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	3 cut(s)	171, 708, 881
AfeI	AGCGCT	1 cut(s)	861
AfiI	CCNNNNNNNGG	1 cut(s)	735
AgsI	TTSAA	4 cut(s)	64, 85, 423, 1050
AjiI	CACGTC	1 cut(s)	1025
AloI	GAACNNNNNNTCC	2 cut(s)	454, 486
AluBI	AGCT	8 cut(s)	16, 71, 118, 239, 317, 722, 797, 996
AluI	AGCT	8 cut(s)	16, 71, 118, 239, 317, 722, 797, 996
Alw21I	GWGCWC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	578, 901
Aor51HI	AGCGCT	1 cut(s)	861
AoxI	GGCC	3 cut(s)	75, 288, 405
ApeKI	GCWGC	4 cut(s)	236, 314, 400, 1001
ApoI	RAATTY	3 cut(s)	300, 418, 506
Asp700I	GAANNNNTTC	1 cut(s)	627
AspLEI	GCGC	2 cut(s)	138, 862
AsuHPI	GGTGA	2 cut(s)	491, 950
BaeGI	GKGCMC	2 cut(s)	906, 1013
BanI	GGYRCC	1 cut(s)	901
BanII	GRGCYC	1 cut(s)	18
BauI	CACGAG	1 cut(s)	1065
BbsI	GAAGAC	2 cut(s)	52, 630
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	4 cut(s)	248, 326, 412, 988
BccI	CCATC	3 cut(s)	147, 363, 446
BfaI	CTAG	2 cut(s)	20, 863
BfmI	CTRYAG	2 cut(s)	1002, 1035
BfoI	RGCGCY	1 cut(s)	863
BisI	GCNGC	4 cut(s)	237, 315, 401, 1002
BlsI	GCNGC	4 cut(s)	238, 316, 402, 1003
BmcAI	AGTACT	1 cut(s)	171
BmgBI	CACGTC	1 cut(s)	1025
BmiI	GGNNCC	1 cut(s)	903
BmsI	GCATC	2 cut(s)	687, 1070
BpiI	GAAGAC	2 cut(s)	52, 630
Bpu10I	CCTNAGC	1 cut(s)	612
BsaBI	GATNNNNATC	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse8I	GATNNNNATC	1 cut(s)	456
BseGI	GGATG	5 cut(s)	158, 279, 385, 678, 725
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMII	CTCAG	3 cut(s)	128, 626, 705
BseRI	GAGGAG	2 cut(s)	389, 672
BseSI	GKGCMC	2 cut(s)	906, 1013
BseXI	GCAGC	4 cut(s)	248, 326, 412, 988
BshFI	GGCC	3 cut(s)	77, 290, 407
BshNI	GGYRCC	1 cut(s)	901
BsiHKAI	GWGCWC	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	1059
BslI	CCNNNNNNNGG	1 cut(s)	735
BsmFI	GGGAC	1 cut(s)	1059
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	3 cut(s)	77, 290, 407
Bsp1286I	GDGCHC	3 cut(s)	18, 906, 1013
Bsp143I	GATC	2 cut(s)	570, 893
BspACI	CCGC	3 cut(s)	273, 518, 852
BspANI	GGCC	3 cut(s)	77, 290, 407
BspCNI	CTCAG	3 cut(s)	127, 625, 706
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	903
BspMAI	CTGCAG	1 cut(s)	1006
BspPI	GGATC	2 cut(s)	578, 901
BspQI	GCTCTTC	2 cut(s)	196, 804
BspT107I	GGYRCC	1 cut(s)	901
BssMI	GATC	2 cut(s)	570, 893
BssSI	CACGAG	1 cut(s)	1065
Bst2BI	CACGAG	1 cut(s)	1065
Bst4CI	ACNGT	3 cut(s)	643, 711, 1039
Bst6I	CTCTTC	2 cut(s)	196, 804
BstC8I	GCNNGC	2 cut(s)	398, 405
BstDEI	CTNAG	3 cut(s)	114, 612, 714
BstF5I	GGATG	5 cut(s)	158, 279, 385, 678, 725
BstH2I	RGCGCY	1 cut(s)	863
BstHHI	GCGC	2 cut(s)	138, 862
BstKTI	GATC	2 cut(s)	573, 896
BstMBI	GATC	2 cut(s)	570, 893
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 752, 794, 1067
BstNSI	RCATGY	2 cut(s)	136, 400
BstSFI	CTRYAG	2 cut(s)	1002, 1035
BstSLI	GKGCMC	2 cut(s)	906, 1013
BstV1I	GCAGC	4 cut(s)	248, 326, 412, 988
BstV2I	GAAGAC	2 cut(s)	52, 630
BstX2I	RGATCY	1 cut(s)	893
BstXI	CCANNNNNNTGG	1 cut(s)	1029
BstYI	RGATCY	1 cut(s)	893
BsuRI	GGCC	3 cut(s)	77, 290, 407
BtrI	CACGTC	1 cut(s)	1025
BtsCI	GGATG	5 cut(s)	158, 279, 385, 678, 725
BtsI	GCAGTG	2 cut(s)	612, 1011
BtsIMutI	CAGTG	3 cut(s)	612, 833, 1011
Cac8I	GCNNGC	2 cut(s)	398, 405
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	2 cut(s)	138, 862
CseI	GACGC	1 cut(s)	1007
Csp6I	GTAC	3 cut(s)	170, 707, 880
CviAII	CATG	4 cut(s)	133, 181, 397, 488
CviQI	GTAC	3 cut(s)	170, 707, 880
DdeI	CTNAG	3 cut(s)	114, 612, 714
DpnI	GATC	2 cut(s)	572, 895
DpnII	GATC	2 cut(s)	570, 893
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	2 cut(s)	196, 804
EarI	CTCTTC	2 cut(s)	196, 804
EciI	GGCGGA	1 cut(s)	867
Ecl136II	GAGCTC	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	18
Eco47III	AGCGCT	1 cut(s)	861
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	585
EcoICRI	GAGCTC	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	18
FaeI	CATG	4 cut(s)	136, 184, 400, 491
FalI	AAGNNNNNCTT	2 cut(s)	615, 647
FaqI	GGGAC	1 cut(s)	1059
FatI	CATG	4 cut(s)	132, 180, 396, 487
FauI	CCCGC	1 cut(s)	266
FauNDI	CATATG	2 cut(s)	619, 847
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	237, 315, 401, 1002
FokI	GGATG	5 cut(s)	165, 266, 392, 665, 712
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	4 cut(s)	237, 315, 401, 1002
FspBI	CTAG	2 cut(s)	20, 863
FspI	TGCGCA	1 cut(s)	137
GlaI	GCGC	2 cut(s)	137, 861
GluI	GCNGC	4 cut(s)	237, 315, 401, 1002
HaeII	RGCGCY	1 cut(s)	863
HaeIII	GGCC	3 cut(s)	77, 290, 407
HgaI	GACGC	1 cut(s)	1007
HhaI	GCGC	2 cut(s)	138, 862
Hin1II	CATG	4 cut(s)	136, 184, 400, 491
Hin6I	GCGC	2 cut(s)	136, 860
HinP1I	GCGC	2 cut(s)	136, 860
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	720
HinfI	GANTC	5 cut(s)	127, 586, 596, 832, 874
HphI	GGTGA	2 cut(s)	491, 950
Hpy166II	GTNNAC	2 cut(s)	346, 1022
Hpy188I	TCNGA	6 cut(s)	462, 543, 715, 730, 837, 873
Hpy188III	TCNNGA	5 cut(s)	124, 181, 568, 975, 1065
Hpy8I	GTNNAC	2 cut(s)	346, 1022
Hpy99I	CGWCG	1 cut(s)	1029
HpyAV	CCTTC	2 cut(s)	88, 733
HpyCH4III	ACNGT	3 cut(s)	643, 711, 1039
HpyCH4IV	ACGT	3 cut(s)	227, 779, 1024
HpyCH4V	TGCA	4 cut(s)	236, 400, 788, 1004
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 752, 794, 1067
HpyF3I	CTNAG	3 cut(s)	114, 612, 714
HpySE526I	ACGT	3 cut(s)	227, 779, 1024
Hsp92II	CATG	4 cut(s)	136, 184, 400, 491
HspAI	GCGC	2 cut(s)	136, 860
Kzo9I	GATC	2 cut(s)	570, 893
LguI	GCTCTTC	2 cut(s)	196, 804
LmnI	GCTCC	3 cut(s)	13, 21, 659
Lsp1109I	GCAGC	4 cut(s)	248, 326, 412, 988
LweI	GCATC	2 cut(s)	687, 1070
MaeI	CTAG	2 cut(s)	20, 863
MaeII	ACGT	3 cut(s)	227, 779, 1024
MaeIII	GTNAC	3 cut(s)	203, 497, 1039
MalI	GATC	2 cut(s)	572, 895
MboI	GATC	2 cut(s)	570, 893
MboII	GAAGA	7 cut(s)	52, 73, 183, 314, 591, 635, 791
MflI	RGATCY	1 cut(s)	893
MhlI	GDGCHC	3 cut(s)	18, 906, 1013
MluCI	AATT	8 cut(s)	102, 300, 418, 436, 506, 756, 935, 981
MlyI	GAGTC	1 cut(s)	841
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	7 cut(s)	188, 367, 370, 379, 650, 825, 916
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	1 cut(s)	698
MslI	CAYNNNNRTG	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	483
MwoI	GCNNNNNNNGC	4 cut(s)	104, 752, 794, 1067
NdeI	CATATG	2 cut(s)	619, 847
NdeII	GATC	2 cut(s)	570, 893
NlaIII	CATG	4 cut(s)	136, 184, 400, 491
NlaIV	GGNNCC	1 cut(s)	903
NmuCI	GTSAC	1 cut(s)	497
NsbI	TGCGCA	1 cut(s)	137
NspI	RCATGY	2 cut(s)	136, 400
PaeI	GCATGC	1 cut(s)	400
PagI	TCATGA	1 cut(s)	180
PceI	AGGCCT	1 cut(s)	407
PciSI	GCTCTTC	2 cut(s)	196, 804
PctI	GAATGC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	4 cut(s)	127, 586, 596, 874
PkrI	GCNGC	4 cut(s)	238, 316, 402, 1003
PleI	GAGTC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	840
Psp124BI	GAGCTC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	903
PstI	CTGCAG	1 cut(s)	1006
PsuI	RGATCY	1 cut(s)	893
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	3 cut(s)	171, 708, 881
RsaNI	GTAC	3 cut(s)	170, 707, 880
RseI	CAYNNNNRTG	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	344
SapI	GCTCTTC	2 cut(s)	196, 804
SaqAI	TTAA	1 cut(s)	698
SatI	GCNGC	4 cut(s)	237, 315, 401, 1002
Sau3AI	GATC	2 cut(s)	570, 893
ScaI	AGTACT	1 cut(s)	171
SchI	GAGTC	1 cut(s)	841
SduI	GDGCHC	3 cut(s)	18, 906, 1013
SfaNI	GCATC	2 cut(s)	687, 1070
SfcI	CTRYAG	2 cut(s)	1002, 1035
SmiMI	CAYNNNNRTG	1 cut(s)	284
SphI	GCATGC	1 cut(s)	400
Sse9I	AATT	8 cut(s)	102, 300, 418, 436, 506, 756, 935, 981
SseBI	AGGCCT	1 cut(s)	407
SsiI	CCGC	3 cut(s)	273, 518, 852
SspI	AATATT	1 cut(s)	811
SspMI	CTAG	2 cut(s)	20, 863
SstI	GAGCTC	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	407
TaaI	ACNGT	3 cut(s)	643, 711, 1039
TaiI	ACGT	3 cut(s)	230, 782, 1027
TaqI	TCGA	2 cut(s)	142, 345
TasI	AATT	8 cut(s)	102, 300, 418, 436, 506, 756, 935, 981
TatI	WGTACW	2 cut(s)	169, 879
TfiI	GAWTC	4 cut(s)	127, 586, 596, 874
Tru1I	TTAA	1 cut(s)	698
Tru9I	TTAA	1 cut(s)	698
TscAI	CASTG	3 cut(s)	612, 833, 1011
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	4 cut(s)	236, 314, 400, 1001
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	7 cut(s)	199, 268, 429, 462, 476, 636, 714
TspRI	CASTG	3 cut(s)	612, 833, 1011
XapI	RAATTY	3 cut(s)	300, 418, 506
XceI	RCATGY	2 cut(s)	136, 400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	2 cut(s)	20, 863
ZrmI	AGTACT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.