Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Forward (+)

27789053 .. 27794550

Gene Structure 5498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26580.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTTTGGATTGAGAGAAGGGTCTTGCTTTCCAAGGGTGTTGGTGGGAGTGAATGTGGGTCTTGCTCTGGTTGATGGCATTATAGCACTTCTTGCATTTTATCAGTTAATTAGAATTCACTCGAGGAATTCACAACTTGGCTGGACTCGACAAAAACTTACTAAAGCATGCTGGCATTGTCTTAATACATACTATTGCCTCGCTGCAGTGTTTCTTCTACTTTTATCGTTCTGGGTTGACCTGTGTCACCAGGCAGATGATGAGGATGATGAGGATGAAGGGAATTTTCGTGAAGCTTTGTTGGAGCAGACATTCAGCAGACCAGATTCATTGGACAGAGATATGATAATTTGGATCGGGATGGGACAAAATCATATTGATTCTGCACTGGTGGCTCGGGTATATGTAGATCTCTTTGCAATAGCAATACTATTATTAGGAGGAGCATTAGCGTGTTATGGGCTCCTATTATGCCTGAGAATGAGAAACGTTAGATCTGAGAGAGCTTCTTCTGAGATGTGGAAGGTTGCAGGTTTAGCTGTTGTTTCCGTTCTCTGTTTCGCCTCAAGTTCTTTGGTGGCTCTATTAACTGATATTCCTATGCTTTACGATTGGCATCAACAGCGTATGAAGGATGTTTATACTTCTGTTTTACTGATTTTATATTATTTCGTGGGTTCATCAATACCTTCAGCCTTTGTCTTATGGGTCATGAGAGAATTACCACCCTCTGTAACAGCTAACACACGAGAAGAACCGTCTACGTTAACCTTCATCAGTGACGTTTCCACGACATTACAAGATCCTCAGAGCTGGCACGCTGCAATGAGCTTTCGGAACCAGGTATCAAGAACAAGCCCCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

289

Amino Acids

32.44

Weight (kDa)

5.49

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	761
AclI	AACGTT	1 cut(s)	489
AclWI	GGATC	2 cut(s)	362, 797
AcsI	RAATTY	3 cut(s)	114, 127, 283
AcuI	CTGAAG	1 cut(s)	675
AjnI	CCWGG	2 cut(s)	249, 840
AluBI	AGCT	6 cut(s)	296, 506, 539, 740, 813, 831
AluI	AGCT	6 cut(s)	296, 506, 539, 740, 813, 831
AlwI	GGATC	2 cut(s)	362, 797
Ama87I	CYCGRG	2 cut(s)	121, 396
ApeKI	GCWGC	2 cut(s)	203, 821
ApoI	RAATTY	3 cut(s)	114, 127, 283
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	2 cut(s)	121, 396
BanII	GRGCYC	1 cut(s)	465
BauI	CACGAG	1 cut(s)	747
BbvI	GCAGC	2 cut(s)	190, 808
BccI	CCATC	2 cut(s)	68, 355
BciT130I	CCWGG	2 cut(s)	251, 842
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	521
BglII	AGATCT	2 cut(s)	409, 494
BisI	GCNGC	2 cut(s)	204, 822
BlsI	GCNGC	2 cut(s)	205, 823
Bme1390I	CCNGG	2 cut(s)	251, 842
BmeT110I	CYCGRG	2 cut(s)	121, 396
BmiI	GGNNCC	2 cut(s)	464, 839
BmrFI	CCNGG	2 cut(s)	251, 842
BmsI	GCATC	1 cut(s)	625
BoxI	GACNNNNGTC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	550
BsaBI	GATNNNNATC	1 cut(s)	615
BsaJI	CCNNGG	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bse1I	ACTGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	831
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	2 cut(s)	251, 842
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	4 cut(s)	271, 280, 366, 640
BseJI	GATNNNNATC	1 cut(s)	615
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	4 cut(s)	467, 489, 504, 821
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	190, 808
BsgI	GTGCAG	1 cut(s)	369
BsiHKCI	CYCGRG	2 cut(s)	121, 396
BslFI	GGGAC	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	378
BsoBI	CYCGRG	2 cut(s)	121, 396
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	4 cut(s)	354, 409, 494, 802
BspCNI	CTCAG	4 cut(s)	468, 490, 505, 820
BspHI	TCATGA	1 cut(s)	711
BspLI	GGNNCC	2 cut(s)	464, 839
BspMAI	CTGCAG	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	2 cut(s)	362, 797
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	4 cut(s)	354, 409, 494, 802
BssSI	CACGAG	1 cut(s)	747
BssT1I	CCWWGG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	747
Bst2UI	CCWGG	2 cut(s)	251, 842
Bst4CI	ACNGT	1 cut(s)	759
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	4 cut(s)	169, 173, 815, 819
BstDEI	CTNAG	4 cut(s)	476, 498, 513, 807
BstF5I	GGATG	4 cut(s)	271, 280, 366, 640
BstKTI	GATC	4 cut(s)	357, 412, 497, 805
BstMBI	GATC	4 cut(s)	354, 409, 494, 802
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 392, 536, 622
BstNI	CCWGG	2 cut(s)	251, 842
BstNSI	RCATGY	1 cut(s)	171
BstPAI	GACNNNNGTC	1 cut(s)	243
BstSCI	CCNGG	2 cut(s)	249, 840
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	190, 808
BstX2I	RGATCY	3 cut(s)	409, 494, 802
BstYI	RGATCY	3 cut(s)	409, 494, 802
BtsCI	GGATG	4 cut(s)	271, 280, 366, 640
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	3 cut(s)	213, 386, 784
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	4 cut(s)	169, 173, 815, 819
CciI	TCATGA	1 cut(s)	711
CsiI	ACCWGGT	1 cut(s)	840
CviAII	CATG	2 cut(s)	168, 712
DdeI	CTNAG	4 cut(s)	476, 498, 513, 807
DpnI	GATC	4 cut(s)	356, 411, 496, 804
DpnII	GATC	4 cut(s)	354, 409, 494, 802
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	465
Eco57I	CTGAAG	1 cut(s)	675
Eco88I	CYCGRG	2 cut(s)	121, 396
EcoRI	GAATTC	2 cut(s)	114, 127
EcoRII	CCWGG	2 cut(s)	249, 840
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	2 cut(s)	171, 715
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	2 cut(s)	167, 711
FblI	GTMKAC	1 cut(s)	761
Fnu4HI	GCNGC	2 cut(s)	204, 822
FokI	GGATG	4 cut(s)	278, 287, 373, 647
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	2 cut(s)	204, 822
GluI	GCNGC	2 cut(s)	204, 822
Hin1II	CATG	2 cut(s)	171, 715
HincII	GTYRAC	2 cut(s)	238, 768
HindII	GTYRAC	2 cut(s)	238, 768
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	3 cut(s)	145, 326, 380
HpaI	GTTAAC	1 cut(s)	768
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	3 cut(s)	238, 762, 768
Hpy188I	TCNGA	4 cut(s)	499, 514, 810, 837
Hpy188III	TCNNGA	4 cut(s)	290, 358, 712, 849
Hpy8I	GTNNAC	3 cut(s)	238, 762, 768
HpyAV	CCTTC	6 cut(s)	11, 272, 517, 625, 699, 781
HpyCH4III	ACNGT	1 cut(s)	759
HpyCH4IV	ACGT	3 cut(s)	489, 764, 783
HpyCH4V	TGCA	6 cut(s)	95, 206, 386, 419, 530, 824
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 392, 536, 622
HpyF3I	CTNAG	4 cut(s)	476, 498, 513, 807
HpySE526I	ACGT	3 cut(s)	489, 764, 783
Hsp92II	CATG	2 cut(s)	171, 715
KspAI	GTTAAC	1 cut(s)	768
Kzo9I	GATC	4 cut(s)	354, 409, 494, 802
LmnI	GCTCC	3 cut(s)	304, 443, 468
Lsp1109I	GCAGC	2 cut(s)	190, 808
LweI	GCATC	1 cut(s)	625
MabI	ACCWGGT	1 cut(s)	840
MaeII	ACGT	3 cut(s)	489, 764, 783
MaeIII	GTNAC	3 cut(s)	245, 733, 779
MalI	GATC	4 cut(s)	356, 411, 496, 804
MboI	GATC	4 cut(s)	354, 409, 494, 802
MboII	GAAGA	3 cut(s)	206, 501, 764
MflI	RGATCY	3 cut(s)	409, 494, 802
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	6 cut(s)	108, 114, 127, 283, 348, 719
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	8 cut(s)	117, 209, 256, 265, 434, 574, 739, 816
MseI	TTAA	4 cut(s)	107, 183, 587, 767
MslI	CAYNNNNRTG	1 cut(s)	451
MspR9I	CCNGG	2 cut(s)	251, 842
MvaI	CCWGG	2 cut(s)	251, 842
MwoI	GCNNNNNNNGC	4 cut(s)	92, 392, 536, 622
NdeII	GATC	4 cut(s)	354, 409, 494, 802
NlaIII	CATG	2 cut(s)	171, 715
NlaIV	GGNNCC	2 cut(s)	464, 839
NmuCI	GTSAC	2 cut(s)	245, 779
NspI	RCATGY	1 cut(s)	171
PaeI	GCATGC	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	121
PagI	TCATGA	1 cut(s)	711
PfeI	GAWTC	2 cut(s)	326, 380
PkrI	GCNGC	2 cut(s)	205, 823
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PshAI	GACNNNNGTC	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	249, 840
PspGI	CCWGG	2 cut(s)	249, 840
PspN4I	GGNNCC	2 cut(s)	464, 839
PspXI	VCTCGAGB	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	208
PsuI	RGATCY	3 cut(s)	409, 494, 802
RseI	CAYNNNNRTG	1 cut(s)	451
SaqAI	TTAA	4 cut(s)	107, 183, 587, 767
SatI	GCNGC	2 cut(s)	204, 822
Sau3AI	GATC	4 cut(s)	354, 409, 494, 802
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	251, 842
SduI	GDGCHC	1 cut(s)	465
SexAI	ACCWGGT	1 cut(s)	840
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	1 cut(s)	204
Sfr274I	CTCGAG	1 cut(s)	121
SlaI	CTCGAG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	451
SmlI	CTYRAG	2 cut(s)	121, 565
SmoI	CTYRAG	2 cut(s)	121, 565
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	6 cut(s)	108, 114, 127, 283, 348, 719
StyD4I	CCNGG	2 cut(s)	249, 840
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	759
TaiI	ACGT	3 cut(s)	492, 767, 786
TaqI	TCGA	2 cut(s)	122, 148
TasI	AATT	6 cut(s)	108, 114, 127, 283, 348, 719
TfiI	GAWTC	2 cut(s)	326, 380
Tru1I	TTAA	4 cut(s)	107, 183, 587, 767
Tru9I	TTAA	4 cut(s)	107, 183, 587, 767
TscAI	CASTG	3 cut(s)	213, 393, 784
TseFI	GTSAC	2 cut(s)	245, 779
TseI	GCWGC	2 cut(s)	203, 821
Tsp45I	GTSAC	2 cut(s)	245, 779
TspDTI	ATGAA	5 cut(s)	291, 318, 644, 669, 763
TspGWI	ACGGA	1 cut(s)	538
TspRI	CASTG	3 cut(s)	213, 393, 784
XapI	RAATTY	3 cut(s)	114, 127, 283
XceI	RCATGY	1 cut(s)	171
XhoI	CTCGAG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.