Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Reverse (-)

73748804 .. 73752971

Gene Structure 4168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG513200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGATGTTGTTGGAATCAATACTGGAAAAAAGTCGTTGCTTTCGTTGCTTTCGTTTGGACTTGCCGTTGCTTATCCTCAATATAGCTCTGGCCGTTTTCAATGGCGTTCTTGCTGCGATTGCGTTTTCTCAGCTGATCAGGATTCACTTGCGCAATCAACAAATTGGATGGACACGCCAAAAAGTACTCCACCTCATGATTGGCTGTTCTAACTTGGGTTACTTCCTATATTTTACATCTACACTGATTGCCACTTTTAAGCAGTGGTTTTGCTGGTCTAATGTCTGCGGGTTCATTCTAATGGCCTACCCTAAAATTCTGTTGCTTGCAGCTTTTCTTCTAGTCCTATCCTTTTGGGTGGACCTTTGCCATCAGGCAAATGATGAAGAGGATGATGATGATGATGACAGTAGCATGCAGCATGCCTTGTTGGAAAATTCGAAGAATAAACACCGTTCATCAGTCACAAATGGTCATAGGATTTGTTGCTCATTCCCAAGCATTCATGTTGGAAGTCACCAGAAATTTGTGATTGCGGTTGTTGGGTTTGTCCTTATTTTGATGATGTCATTTTCTGTGGTAATCTGGATTGGTGCGGGGAAGAATCCCATTGATTCTTCAGCAGTGGCTGAGGTATATGAAGACCTTCTCGCCTTTGTAGTTCTTTTTTTAGGAGGAGGATTAGGTTGCTATGGCATTCTGCTACTTCGTAAGTTAAGGAAAGTACGGTCTGAGAAAGCTTCATCTGAAATGTGGAAGGTTGGCGGTTTAGCAGTTGCTTCTGTTGTATGTTTTACATCAAGTGCATTAGTAGCTCTTATTACAGATATTCCGCTATATGAACCTTGGAGGCTGAAAAAAGCATATGGTGGGAAAGCGCTAGTTTTTCTGATGCTGTACTATTTTATAGGCTCTTGGGTACCCTCAGCTTTTGTATTATGGTTCATGAGAGAATTACCGCCACCAATCACCAATCGCCAACGGGAACAATCAAGAACAATTACTTTTATCAGCTATGCTGGAGTGGGCCGACAGCATCCTCGTCACTGGGCTACAGTAACAAGTTCAAATAATCAGGCATCGCGAGCAAGTCCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

366

Amino Acids

41.2

Weight (kDa)

9.15

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	27 - 128	9.1e-12	THH1/TOM1/TOM3 domain
THH1_TOM1-3_dom	PF06454	187 - 328	1.8e-06	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	152
Acc65I	GGTACC	1 cut(s)	919
AccB1I	GGYRCC	1 cut(s)	919
AccII	CGCG	1 cut(s)	1084
AciI	CCGC	6 cut(s)	288, 536, 596, 765, 833, 959
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	3 cut(s)	315, 436, 524
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	4 cut(s)	186, 726, 899, 921
AfeI	AGCGCT	1 cut(s)	879
AgsI	TTSAA	2 cut(s)	100, 1068
AluBI	AGCT	7 cut(s)	86, 133, 332, 740, 815, 929, 1014
AluI	AGCT	7 cut(s)	86, 133, 332, 740, 815, 929, 1014
AlwNI	CAGNNNCTG	1 cut(s)	629
Aor51HI	AGCGCT	1 cut(s)	879
AoxI	GGCC	3 cut(s)	90, 303, 1027
ApeKI	GCWGC	3 cut(s)	113, 329, 418
ApoI	RAATTY	3 cut(s)	315, 436, 524
Asp700I	GAANNNNTTC	1 cut(s)	645
Asp718I	GGTACC	1 cut(s)	919
AspLEI	GCGC	2 cut(s)	153, 880
AspS9I	GGNCC	2 cut(s)	361, 1027
AsuHPI	GGTGA	2 cut(s)	509, 961
AsuII	TTCGAA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	919
BbsI	GAAGAC	1 cut(s)	648
BbvCI	CCTCAGC	2 cut(s)	630, 925
BbvI	GCAGC	3 cut(s)	100, 341, 430
BccI	CCATC	2 cut(s)	162, 378
BceAI	ACGGC	2 cut(s)	49, 77
BclI	TGATCA	1 cut(s)	135
BfaI	CTAG	2 cut(s)	341, 881
BfmI	CTRYAG	1 cut(s)	1053
BfoI	RGCGCY	1 cut(s)	881
BisI	GCNGC	3 cut(s)	114, 330, 419
BlsI	GCNGC	3 cut(s)	115, 331, 420
BmcAI	AGTACT	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	361, 1027
BmiI	GGNNCC	1 cut(s)	921
BmrI	ACTGGG	1 cut(s)	1057
BmsI	GCATC	3 cut(s)	882, 1045, 1088
BmuI	ACTGGG	1 cut(s)	1057
BpiI	GAAGAC	1 cut(s)	648
BpmI	CTGGAG	1 cut(s)	1041
Bpu10I	CCTNAGC	2 cut(s)	630, 925
Bpu14I	TTCGAA	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	845
Bse1I	ACTGG	2 cut(s)	27, 1052
BseDI	CCNNGG	1 cut(s)	845
BseGI	GGATG	3 cut(s)	173, 397, 1036
BseMII	CTCAG	4 cut(s)	143, 621, 723, 939
BseNI	ACTGG	2 cut(s)	27, 1052
BseRI	GAGGAG	1 cut(s)	690
BseXI	GCAGC	3 cut(s)	100, 341, 430
Bsh1236I	CGCG	1 cut(s)	1084
BshFI	GGCC	3 cut(s)	92, 305, 1029
BshNI	GGYRCC	1 cut(s)	919
BslFI	GGGAC	1 cut(s)	1077
BsmFI	GGGAC	1 cut(s)	1077
BsmI	GAATGC	2 cut(s)	501, 696
BsnI	GGCC	3 cut(s)	92, 305, 1029
Bsp119I	TTCGAA	1 cut(s)	440
Bsp143I	GATC	1 cut(s)	135
Bsp68I	TCGCGA	1 cut(s)	1084
BspACI	CCGC	6 cut(s)	288, 536, 596, 765, 833, 959
BspANI	GGCC	3 cut(s)	92, 305, 1029
BspCNI	CTCAG	4 cut(s)	142, 622, 724, 938
BspFNI	CGCG	1 cut(s)	1084
BspHI	TCATGA	2 cut(s)	195, 945
BspLI	GGNNCC	1 cut(s)	921
BspT104I	TTCGAA	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	919
BsrI	ACTGG	2 cut(s)	27, 1052
BssECI	CCNNGG	1 cut(s)	845
BssMI	GATC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	845
Bst4CI	ACNGT	4 cut(s)	410, 455, 729, 1057
Bst6I	CTCTTC	1 cut(s)	381
BstBI	TTCGAA	1 cut(s)	440
BstC8I	GCNNGC	4 cut(s)	327, 416, 423, 1086
BstDEI	CTNAG	4 cut(s)	129, 630, 732, 925
BstF5I	GGATG	3 cut(s)	173, 397, 1036
BstFNI	CGCG	1 cut(s)	1084
BstH2I	RGCGCY	1 cut(s)	881
BstHHI	GCGC	2 cut(s)	153, 880
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 119, 812, 1085
BstNSI	RCATGY	2 cut(s)	418, 425
BstSFI	CTRYAG	1 cut(s)	1053
BstUI	CGCG	1 cut(s)	1084
BstV1I	GCAGC	3 cut(s)	100, 341, 430
BstV2I	GAAGAC	1 cut(s)	648
BsuRI	GGCC	3 cut(s)	92, 305, 1029
BtgZI	GCGATG	1 cut(s)	1065
BtsCI	GGATG	3 cut(s)	173, 397, 1036
BtsI	GCAGTG	2 cut(s)	269, 630
BtsIMutI	CAGTG	4 cut(s)	242, 269, 630, 1045
BtuMI	TCGCGA	1 cut(s)	1084
Cac8I	GCNNGC	4 cut(s)	327, 416, 423, 1086
CaiI	CAGNNNCTG	1 cut(s)	629
CciI	TCATGA	2 cut(s)	195, 945
CfoI	GCGC	2 cut(s)	153, 880
Cfr13I	GGNCC	2 cut(s)	361, 1027
Csp6I	GTAC	4 cut(s)	185, 725, 898, 920
CviAII	CATG	5 cut(s)	196, 415, 422, 506, 946
CviQI	GTAC	4 cut(s)	185, 725, 898, 920
DdeI	CTNAG	4 cut(s)	129, 630, 732, 925
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	845
Eco47I	GGWCC	1 cut(s)	361
Eco47III	AGCGCT	1 cut(s)	879
Eco57I	CTGAAG	1 cut(s)	603
EcoT14I	CCWWGG	1 cut(s)	845
ErhI	CCWWGG	1 cut(s)	845
FaeI	CATG	5 cut(s)	199, 418, 425, 509, 949
FaqI	GGGAC	1 cut(s)	1077
FatI	CATG	5 cut(s)	195, 414, 421, 505, 945
FauI	CCCGC	2 cut(s)	281, 589
FauNDI	CATATG	1 cut(s)	865
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	114, 330, 419
FokI	GGATG	3 cut(s)	180, 404, 1023
Fsp4HI	GCNGC	3 cut(s)	114, 330, 419
FspBI	CTAG	2 cut(s)	341, 881
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	2 cut(s)	152, 879
GluI	GCNGC	3 cut(s)	114, 330, 419
GsuI	CTGGAG	1 cut(s)	1041
HaeII	RGCGCY	1 cut(s)	881
HaeIII	GGCC	3 cut(s)	92, 305, 1029
HhaI	GCGC	2 cut(s)	153, 880
Hin1II	CATG	5 cut(s)	199, 418, 425, 509, 949
Hin6I	GCGC	2 cut(s)	151, 878
HinP1I	GCGC	2 cut(s)	151, 878
HindIII	AAGCTT	1 cut(s)	738
HinfI	GANTC	4 cut(s)	14, 142, 604, 614
HphI	GGTGA	2 cut(s)	509, 961
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	3 cut(s)	733, 748, 891
Hpy188III	TCNNGA	6 cut(s)	139, 196, 586, 946, 993, 1083
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	656, 751
HpyCH4III	ACNGT	4 cut(s)	410, 455, 729, 1057
HpyCH4V	TGCA	3 cut(s)	329, 418, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 119, 812, 1085
HpyF3I	CTNAG	4 cut(s)	129, 630, 732, 925
Hsp92II	CATG	5 cut(s)	199, 418, 425, 509, 949
HspAI	GCGC	2 cut(s)	151, 878
KpnI	GGTACC	1 cut(s)	923
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	135
Lsp1109I	GCAGC	3 cut(s)	100, 341, 430
LweI	GCATC	3 cut(s)	882, 1045, 1088
MaeI	CTAG	2 cut(s)	341, 881
MaeIII	GTNAC	5 cut(s)	218, 463, 515, 1043, 1057
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	6 cut(s)	329, 398, 454, 609, 613, 653
MluCI	AATT	6 cut(s)	162, 315, 436, 524, 953, 999
MmeI	TCCRAC	2 cut(s)	411, 490
MnlI	CCTC	9 cut(s)	86, 203, 382, 625, 668, 671, 843, 934, 1050
MroXI	GAANNNNTTC	1 cut(s)	645
MseI	TTAA	3 cut(s)	258, 716, 1099
MslI	CAYNNNNRTG	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	133
Mva1269I	GAATGC	2 cut(s)	501, 696
MvnI	CGCG	1 cut(s)	1084
MwoI	GCNNNNNNNGC	4 cut(s)	45, 119, 812, 1085
NdeI	CATATG	1 cut(s)	865
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	5 cut(s)	199, 418, 425, 509, 949
NlaIV	GGNNCC	1 cut(s)	921
NmuCI	GTSAC	3 cut(s)	463, 515, 1043
NruI	TCGCGA	1 cut(s)	1084
NsbI	TGCGCA	1 cut(s)	152
NspI	RCATGY	2 cut(s)	418, 425
NspV	TTCGAA	1 cut(s)	440
PaeI	GCATGC	2 cut(s)	418, 425
PagI	TCATGA	2 cut(s)	195, 945
PcsI	WCGNNNNNNNCGW	2 cut(s)	40, 49
PctI	GAATGC	2 cut(s)	501, 696
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	4 cut(s)	14, 142, 604, 614
PkrI	GCNGC	3 cut(s)	115, 331, 420
PspN4I	GGNNCC	1 cut(s)	921
PspPI	GGNCC	2 cut(s)	361, 1027
PstNI	CAGNNNCTG	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	133
RruI	TCGCGA	1 cut(s)	1084
RsaI	GTAC	4 cut(s)	186, 726, 899, 921
RsaNI	GTAC	4 cut(s)	185, 725, 898, 920
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	3 cut(s)	258, 716, 1099
SatI	GCNGC	3 cut(s)	114, 330, 419
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	2 cut(s)	361, 1027
ScaI	AGTACT	1 cut(s)	186
SfaNI	GCATC	3 cut(s)	882, 1045, 1088
SfcI	CTRYAG	1 cut(s)	1053
SfuI	TTCGAA	1 cut(s)	440
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	299
SphI	GCATGC	2 cut(s)	418, 425
Sse9I	AATT	6 cut(s)	162, 315, 436, 524, 953, 999
SsiI	CCGC	6 cut(s)	288, 536, 596, 765, 833, 959
SspMI	CTAG	2 cut(s)	341, 881
StyI	CCWWGG	1 cut(s)	845
TaaI	ACNGT	4 cut(s)	410, 455, 729, 1057
TaqI	TCGA	1 cut(s)	440
TasI	AATT	6 cut(s)	162, 315, 436, 524, 953, 999
TatI	WGTACW	2 cut(s)	184, 897
TfiI	GAWTC	4 cut(s)	14, 142, 604, 614
Tru1I	TTAA	3 cut(s)	258, 716, 1099
Tru9I	TTAA	3 cut(s)	258, 716, 1099
TscAI	CASTG	4 cut(s)	249, 269, 630, 1052
TseFI	GTSAC	3 cut(s)	463, 515, 1043
TseI	GCWGC	3 cut(s)	113, 329, 418
Tsp45I	GTSAC	3 cut(s)	463, 515, 1043
TspDTI	ATGAA	8 cut(s)	283, 399, 447, 494, 654, 732, 855, 934
TspRI	CASTG	4 cut(s)	249, 269, 630, 1052
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	3 cut(s)	315, 436, 524
XceI	RCATGY	2 cut(s)	418, 425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	645
XspI	CTAG	2 cut(s)	341, 881
ZrmI	AGTACT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.