Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Forward (+)

10753531 .. 10758476

Gene Structure 4946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13070.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTGTTCTTCTTGGAGCTACCAGTGGAAAAAGGTGATTGCTTTCCGGCGGACTTGCTTATCTTCAATAGAGCTCTGGCCATCTTCAATGGCGTTCTTGCTGCGGTTGCGTTTTCTCAGCTGATCAGAATTCATATGCGCAATCAACAAAGTGGATGGACACGCCAAAAAGTACTCCACCTCTTGATTGGTTCTTCTAACTTGGGTTACTTCATATACTTTACATTTACGCTGGTTGTAACTTGTAAGCAGTGGCGTTGCTGGTCTAATGTCTGTGGATTTATTCTGATGGCCTACCCGAAAGTTCTGTTTCTCGCAGCCTTTCTTTCACTCCTATCCTTTTGGTTCGACCTTTGCCATCAGGCAAATGATGAAGAGGATGAAGGTGATGAAGAGGACAACATCGTGGAGCAGACCTTGTTAGAAAATTCAAAGAATTCATCAAGCACAGATGGTCATTGGGTTTGTTGTTCATTCCAAAGCATTCATGTTGGAAGTCACCAAAAGTTTGTGATTGCGGTTGTTGTGTTTGTCCTTATTCTGATGATGTCATTTGCTGTGGTAATCTGGATTGGTGCGGGTAAGAACCCCATTGATTCTTCAGCAGTTGCTCAGGTATATGAAGACTTTCTCAGTTTTGCCATTCTTTCACTAGGGGGAGCATTAGGTTTCTATGGCGTTCTGCTATCTCGTAAGTTAAGGAAAGTACGGTCTGAGAAAGCTTCTTCCGAAATGTGGAAGGTTGCGAGCTTGGCGGTTACTTCTGTTGTATGCTTTACGTCAAGTGCATTGGTTGCTCTTCTTACACATATTCCTCTATATTGTCAGCGGAGTCTGAAAATTACATATGGCGGAAAAGCACTTGTTTTTCTGATTCTGTACTACTTTATAGGATCTTTGGTGCCCTCGGCTTTTGTATTGTGGATTGTGAGAGAATTGCCAGCCCCGATAACTAATCGCCAAAGGGAGCAGTCAAGAACAATTACGTTTGTCAGCTATGGTGCAGTGGGGCCACAGCGTCCTCATCAGTGGGCTACGGTAACAAGTTCAAATAATCAGGCATCACGAGCAAGTCCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

361

Amino Acids

40.21

Weight (kDa)

8.53

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	901
AciI	CCGC	7 cut(s)	50, 104, 518, 578, 755, 829, 852
AclWI	GGATC	1 cut(s)	901
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	3 cut(s)	129, 427, 436
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	3 cut(s)	174, 708, 881
AfiI	CCNNNNNNNGG	1 cut(s)	735
AgsI	TTSAA	4 cut(s)	67, 88, 432, 1050
AluBI	AGCT	6 cut(s)	19, 74, 121, 722, 750, 996
AluI	AGCT	6 cut(s)	19, 74, 121, 722, 750, 996
Alw21I	GWGCWC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	901
AoxI	GGCC	3 cut(s)	78, 291, 1010
ApeKI	GCWGC	2 cut(s)	101, 317
ApoI	RAATTY	3 cut(s)	129, 427, 436
Asp700I	GAANNNNTTC	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	1010
AsuHPI	GGTGA	3 cut(s)	47, 398, 491
BaeGI	GKGCMC	1 cut(s)	906
BalI	TGGCCA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	901
BanII	GRGCYC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	1065
BbsI	GAAGAC	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	88, 329
BccI	CCATC	5 cut(s)	89, 150, 283, 366, 446
BclI	TGATCA	1 cut(s)	123
BfaI	CTAG	1 cut(s)	653
BisI	GCNGC	2 cut(s)	102, 318
BlsI	GCNGC	2 cut(s)	103, 319
BmcAI	AGTACT	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	1010
BmiI	GGNNCC	2 cut(s)	903, 1011
BmsI	GCATC	1 cut(s)	1070
BpiI	GAAGAC	1 cut(s)	630
Bpu10I	CCTNAGC	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	906
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse1I	ACTGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	906
BseGI	GGATG	2 cut(s)	161, 385
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMII	CTCAG	4 cut(s)	131, 626, 646, 705
BseNI	ACTGG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	906
BseXI	GCAGC	2 cut(s)	88, 329
BsgI	GTGCAG	1 cut(s)	1023
BshFI	GGCC	3 cut(s)	80, 293, 1012
BshNI	GGYRCC	1 cut(s)	901
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	1059
BslI	CCNNNNNNNGG	1 cut(s)	735
BsmFI	GGGAC	1 cut(s)	1059
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	3 cut(s)	80, 293, 1012
Bsp1286I	GDGCHC	2 cut(s)	76, 906
Bsp143I	GATC	2 cut(s)	123, 893
BspACI	CCGC	7 cut(s)	50, 104, 518, 578, 755, 829, 852
BspANI	GGCC	3 cut(s)	80, 293, 1012
BspCNI	CTCAG	4 cut(s)	130, 625, 645, 706
BspLI	GGNNCC	2 cut(s)	903, 1011
BspPI	GGATC	1 cut(s)	901
BspQI	GCTCTTC	1 cut(s)	804
BspT107I	GGYRCC	1 cut(s)	901
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	906
BssMI	GATC	2 cut(s)	123, 893
BssSI	CACGAG	1 cut(s)	1065
Bst2BI	CACGAG	1 cut(s)	1065
Bst4CI	ACNGT	2 cut(s)	711, 1039
Bst6I	CTCTTC	3 cut(s)	369, 387, 804
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	2 cut(s)	748, 942
BstDEI	CTNAG	4 cut(s)	117, 612, 632, 714
BstF5I	GGATG	2 cut(s)	161, 385
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	126, 896
BstMBI	GATC	2 cut(s)	123, 893
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 752, 794, 1067
BstSLI	GKGCMC	1 cut(s)	906
BstV1I	GCAGC	2 cut(s)	88, 329
BstV2I	GAAGAC	1 cut(s)	630
BstX2I	RGATCY	1 cut(s)	893
BstYI	RGATCY	1 cut(s)	893
BsuRI	GGCC	3 cut(s)	80, 293, 1012
BtsCI	GGATG	2 cut(s)	161, 385
BtsI	GCAGTG	2 cut(s)	257, 1011
BtsIMutI	CAGTG	4 cut(s)	30, 257, 1011, 1034
Cac8I	GCNNGC	2 cut(s)	748, 942
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	1010
CseI	GACGC	1 cut(s)	1007
Csp6I	GTAC	3 cut(s)	173, 707, 880
CviAII	CATG	1 cut(s)	488
CviQI	GTAC	3 cut(s)	173, 707, 880
DdeI	CTNAG	4 cut(s)	117, 612, 632, 714
DpnI	GATC	2 cut(s)	125, 895
DpnII	GATC	2 cut(s)	123, 893
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	3 cut(s)	369, 387, 804
EarI	CTCTTC	3 cut(s)	369, 387, 804
EciI	GGCGGA	2 cut(s)	65, 867
Ecl136II	GAGCTC	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	585
EcoICRI	GAGCTC	1 cut(s)	74
EcoRI	GAATTC	2 cut(s)	129, 436
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	1 cut(s)	491
FaqI	GGGAC	1 cut(s)	1059
FatI	CATG	1 cut(s)	487
FauI	CCCGC	1 cut(s)	571
FauNDI	CATATG	2 cut(s)	135, 847
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	102, 318
FokI	GGATG	2 cut(s)	168, 392
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	2 cut(s)	102, 318
FspBI	CTAG	1 cut(s)	653
FspI	TGCGCA	1 cut(s)	140
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	2 cut(s)	102, 318
HaeIII	GGCC	3 cut(s)	80, 293, 1012
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	1007
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	491
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	720
HinfI	GANTC	3 cut(s)	596, 832, 874
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	3 cut(s)	47, 398, 491
Hpy188I	TCNGA	7 cut(s)	128, 288, 543, 715, 730, 837, 873
Hpy188III	TCNNGA	4 cut(s)	184, 568, 975, 1065
HpyAV	CCTTC	2 cut(s)	377, 733
HpyCH4III	ACNGT	2 cut(s)	711, 1039
HpyCH4IV	ACGT	2 cut(s)	779, 986
HpyCH4V	TGCA	2 cut(s)	788, 1004
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 752, 794, 1067
HpyF3I	CTNAG	4 cut(s)	117, 612, 632, 714
HpySE526I	ACGT	2 cut(s)	779, 986
Hsp92II	CATG	1 cut(s)	491
HspAI	GCGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	123, 893
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	4 cut(s)	16, 409, 659, 967
Lsp1109I	GCAGC	2 cut(s)	88, 329
LweI	GCATC	1 cut(s)	1070
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	2 cut(s)	779, 986
MaeIII	GTNAC	5 cut(s)	206, 238, 497, 757, 1039
MalI	GATC	2 cut(s)	125, 895
MboI	GATC	2 cut(s)	123, 893
MboII	GAAGA	9 cut(s)	55, 76, 186, 386, 404, 591, 635, 717, 791
MflI	RGATCY	1 cut(s)	893
MhlI	GDGCHC	2 cut(s)	76, 906
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	6 cut(s)	129, 427, 436, 840, 935, 981
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	841
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	6 cut(s)	191, 370, 388, 825, 916, 1032
Mox20I	TGGCCA	1 cut(s)	80
MroXI	GAANNNNTTC	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	1 cut(s)	698
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	2 cut(s)	121, 829
MspI	CCGG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	483
MwoI	GCNNNNNNNGC	4 cut(s)	107, 752, 794, 1067
NdeI	CATATG	2 cut(s)	135, 847
NdeII	GATC	2 cut(s)	123, 893
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	2 cut(s)	903, 1011
NmeAIII	GCCGAG	1 cut(s)	887
NmuCI	GTSAC	1 cut(s)	497
NsbI	TGCGCA	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	804
PctI	GAATGC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	596, 874
PkrI	GCNGC	2 cut(s)	103, 319
PleI	GAGTC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	840
Psp124BI	GAGCTC	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	903, 1011
PspPI	GGNCC	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	893
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	3 cut(s)	174, 708, 881
RsaNI	GTAC	3 cut(s)	173, 707, 880
SacI	GAGCTC	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	1 cut(s)	698
SatI	GCNGC	2 cut(s)	102, 318
Sau3AI	GATC	2 cut(s)	123, 893
Sau96I	GGNCC	1 cut(s)	1010
ScaI	AGTACT	1 cut(s)	174
SchI	GAGTC	1 cut(s)	841
SduI	GDGCHC	2 cut(s)	76, 906
SfaNI	GCATC	1 cut(s)	1070
Sse9I	AATT	6 cut(s)	129, 427, 436, 840, 935, 981
SsiI	CCGC	7 cut(s)	50, 104, 518, 578, 755, 829, 852
SspMI	CTAG	1 cut(s)	653
SstI	GAGCTC	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	711, 1039
TaiI	ACGT	2 cut(s)	782, 989
TaqI	TCGA	1 cut(s)	348
TasI	AATT	6 cut(s)	129, 427, 436, 840, 935, 981
TatI	WGTACW	2 cut(s)	172, 879
TfiI	GAWTC	2 cut(s)	596, 874
Tru1I	TTAA	1 cut(s)	698
Tru9I	TTAA	1 cut(s)	698
TscAI	CASTG	4 cut(s)	30, 257, 1011, 1034
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	101, 317
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	9 cut(s)	122, 202, 387, 396, 405, 429, 462, 476, 636
TspRI	CASTG	4 cut(s)	30, 257, 1011, 1034
XapI	RAATTY	3 cut(s)	129, 427, 436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	1 cut(s)	653
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.