Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001716

Physical Location & Seq

Genomic Coordinates Forward (+)

3464042 .. 3470975

Gene Structure 6934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05960.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTTTGAATTGAGAGAAGGGTATTGTTTGCCAAAGGTGTTGGTGGGTGTGAATGTGGGTCTTGCTCTTGTTGATGCCATTGTAGCTGCTCTTGCTTTTTATCAGTTAATTAGGATTCACTCAAGGAATTCACAACTTGGATGGACTCGCCAAAAAGTTTTTCATCTATTGATTGGCTCTTCGAATATGGGTTGCGTGATTTATTTTGTATTAACTCTTTTTGCTGCTTGCAAAGGGTGGAAATGTTGGTCCAACTCTTGTGGTTTTAGCCTTATGGCGTTACCCAAAATTTTGTTCTTTGCTGCATTCCTTCTACTTTTATCGTTCTGGGTTGACCTGTGCCATCAGGCAGATGACGAAGATGAGGAGGATGAAGGTAGTTTTCACGAAGCTTTGTTGGAGAAGACATTTAGCAATGTTAATTCATTGGACACTGAGAGTCATAGAAGGTGTTTTCCCCGAATTGTCCATGTCGGAAGCCGCCAGAAAATTGTGATTTTGGTTACTGTGCTAGTTTTTATTATAATGATCACATGTGCTGTGATAATCTGGATCGGGATGGGAAAAAATGCCATCGATTCTGCTGTGGTAGCTCGGGTATATGTAGATCTTTTTGCAATACTGACGCTACTATTGGGAGGAGCATTGGCATGTTATGGACTGCTATTATGCTTGAGAATGAGAAAAGTTAGATCTGAGAGAGCCCTTTCTGAGATGTGGAAGGTTGCAGGTTTAGCTGTTGTTTCCATACTATGTTTCGCCTCAAGTGCTTTGGTGGCTCTATTAACTAATATTCCTATGCTTTACCATTGCTATCAACAGCCAGTGAATGGTGTTTATACTGCTCTTTTGCTGATTTTATATTATTTTGTAGGTTCATCAATACCCTCAGCGTATGTGTTATGGGTGATAAAAGAATTACCACCCTCAATAACAGCTAACACACGACAACGACTAGAAGACTCAAATACATTAACTTTCATCAGTGATGATTCCAATGCATTACCACATCCTCCGAGCTGGACTGCAGCAATGAGCTTGCGGAACCAGGTGCAGGTATCAAGAGCAAGTCCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

360

Amino Acids

39.93

Weight (kDa)

8.23

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	17 - 111	6.9e-11	THH1/TOM1/TOM3 domain
THH1_TOM1-3_dom	PF06454	169 - 320	7.6e-07	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59090 AT3G59090 AT3G59090 AT3G59090
fragaria_vesca	FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_3g05960 FvH4_6g38510
malus_domestica	MD05G1287300.v1.1 MD10G1264700.v1.1 MD17G1137300.v1.1
prunus_persica	Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.3G175100_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1 Prupe.4G077600_v2.0.a1
pyrus_communis	pycom05g26580 pycom10g22080 pycom17g13070
rosa_chinensis	RchiOBHm_Chr2g0151741 RchiOBHm_Chr5g0013511
rosa_laevigata	RLG00000020578 RLG00000032021
rosa_multiflora	Rmu_sc0003458.1_g000021 Rmu_sc0005294.1_g000037 Rmu_sc0014653.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063060 Rroxscaffold_2G00096180 Rroxscaffold_7G00189980
rosa_rugosa	Rorug02G0428700 Rorug05G0010100
rosa_samantha	Rh2AG489700 Rh2BG502100 Rh2CG475900 Rh2DG513200 Rh5AG105100 Rh5BG101300 Rh5CG113200 Rh5DG099900
rosa_wichuraiana	Rw2G040140 Rw5G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
Acc36I	ACCTGC	2 cut(s)	719, 1045
AccB7I	CCANNNNNTGG	1 cut(s)	830
AciI	CCGC	2 cut(s)	481, 1042
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	2 cut(s)	127, 288
AfiI	CCNNNNNNNGG	2 cut(s)	830, 1054
AflIII	ACRYGT	1 cut(s)	533
AgsI	TTSAA	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	1047
AjuI	GAANNNNNNNTTGG	4 cut(s)	144, 176, 278, 310
AluBI	AGCT	7 cut(s)	86, 392, 593, 737, 938, 1020, 1038
AluI	AGCT	7 cut(s)	86, 392, 593, 737, 938, 1020, 1038
AlwI	GGATC	1 cut(s)	560
Ama87I	CYCGRG	1 cut(s)	594
ApeKI	GCWGC	4 cut(s)	86, 224, 302, 1028
ApoI	RAATTY	2 cut(s)	127, 288
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	919
AsuII	TTCGAA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	594
AvaII	GGWCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	706
BbsI	GAAGAC	2 cut(s)	410, 966
BbvCI	CCTCAGC	1 cut(s)	889
BbvI	GCAGC	4 cut(s)	73, 211, 289, 1040
BccI	CCATC	4 cut(s)	135, 351, 553, 581
BciT130I	CCWGG	1 cut(s)	1049
BclI	TGATCA	1 cut(s)	528
BfaI	CTAG	2 cut(s)	512, 956
BfmI	CTRYAG	1 cut(s)	1026
BfuAI	ACCTGC	2 cut(s)	719, 1045
BglII	AGATCT	2 cut(s)	607, 692
BisI	GCNGC	5 cut(s)	87, 225, 303, 481, 1029
BlsI	GCNGC	5 cut(s)	88, 226, 304, 482, 1030
Bme1390I	CCNGG	1 cut(s)	1049
Bme18I	GGWCC	1 cut(s)	249
BmeT110I	CYCGRG	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	1046
BmrFI	CCNGG	1 cut(s)	1049
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	2 cut(s)	410, 966
Bpu10I	CCTNAGC	1 cut(s)	889
Bpu14I	TTCGAA	1 cut(s)	182
BpuEI	CTTGAG	3 cut(s)	106, 694, 748
Bsa29I	ATCGAT	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	2 cut(s)	830, 1054
Bse1I	ACTGG	1 cut(s)	824
Bse3DI	GCAATG	3 cut(s)	421, 808, 1038
BseBI	CCWGG	1 cut(s)	1049
BseCI	ATCGAT	1 cut(s)	576
BseGI	GGATG	4 cut(s)	146, 376, 564, 1009
BseLI	CCNNNNNNNGG	2 cut(s)	830, 1054
BseMI	GCAATG	3 cut(s)	421, 808, 1038
BseMII	CTCAG	4 cut(s)	426, 687, 702, 903
BseNI	ACTGG	1 cut(s)	824
BseRI	GAGGAG	2 cut(s)	380, 654
BseXI	GCAGC	4 cut(s)	73, 211, 289, 1040
BsgI	GTGCAG	1 cut(s)	1073
BshVI	ATCGAT	1 cut(s)	576
BsiHKCI	CYCGRG	1 cut(s)	594
BslI	CCNNNNNNNGG	2 cut(s)	830, 1054
BsmI	GAATGC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	594
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp143I	GATC	4 cut(s)	528, 552, 607, 692
BspACI	CCGC	2 cut(s)	481, 1042
BspCNI	CTCAG	4 cut(s)	427, 688, 703, 902
BspDI	ATCGAT	1 cut(s)	576
BspLI	GGNNCC	1 cut(s)	1046
BspMAI	CTGCAG	1 cut(s)	1030
BspMI	ACCTGC	2 cut(s)	719, 1045
BspPI	GGATC	1 cut(s)	560
BspQI	GCTCTTC	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	182
BsrDI	GCAATG	3 cut(s)	421, 808, 1038
BsrI	ACTGG	1 cut(s)	824
BssMI	GATC	4 cut(s)	528, 552, 607, 692
Bst2UI	CCWGG	1 cut(s)	1049
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	229, 1040
BstDEI	CTNAG	4 cut(s)	435, 696, 711, 889
BstF5I	GGATG	4 cut(s)	146, 376, 564, 1009
BstKTI	GATC	4 cut(s)	531, 555, 610, 695
BstMBI	GATC	4 cut(s)	528, 552, 607, 692
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 590, 734, 767, 776
BstNI	CCWGG	1 cut(s)	1049
BstNSI	RCATGY	2 cut(s)	537, 654
BstSCI	CCNGG	1 cut(s)	1047
BstSFI	CTRYAG	1 cut(s)	1026
BstV1I	GCAGC	4 cut(s)	73, 211, 289, 1040
BstV2I	GAAGAC	2 cut(s)	410, 966
BstX2I	RGATCY	2 cut(s)	607, 692
BstYI	RGATCY	2 cut(s)	607, 692
Bsu15I	ATCGAT	1 cut(s)	576
BsuTUI	ATCGAT	1 cut(s)	576
BtsCI	GGATG	4 cut(s)	146, 376, 564, 1009
BtsIMutI	CAGTG	3 cut(s)	432, 831, 991
BveI	ACCTGC	2 cut(s)	719, 1045
Cac8I	GCNNGC	2 cut(s)	229, 1040
Cfr13I	GGNCC	1 cut(s)	249
ClaI	ATCGAT	1 cut(s)	576
CseI	GACGC	1 cut(s)	634
CsiI	ACCWGGT	1 cut(s)	1047
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	3 cut(s)	470, 534, 651
DdeI	CTNAG	4 cut(s)	435, 696, 711, 889
DpnI	GATC	4 cut(s)	530, 554, 609, 694
DpnII	GATC	4 cut(s)	528, 552, 607, 692
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	706
Eco47I	GGWCC	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	594
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	1047
EcoT22I	ATGCAT	1 cut(s)	1003
EcoT38I	GRGCYC	1 cut(s)	706
FaeI	CATG	3 cut(s)	473, 537, 654
FatI	CATG	3 cut(s)	469, 533, 650
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	5 cut(s)	87, 225, 303, 481, 1029
FokI	GGATG	4 cut(s)	153, 383, 571, 996
FriOI	GRGCYC	1 cut(s)	706
Fsp4HI	GCNGC	5 cut(s)	87, 225, 303, 481, 1029
FspBI	CTAG	2 cut(s)	512, 956
GluI	GCNGC	5 cut(s)	87, 225, 303, 481, 1029
HgaI	GACGC	1 cut(s)	634
Hin1II	CATG	3 cut(s)	473, 537, 654
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	6 cut(s)	115, 145, 439, 578, 962, 992
HphI	GGTGA	1 cut(s)	919
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	476, 697, 712, 1017
Hpy188III	TCNNGA	4 cut(s)	386, 550, 556, 1062
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	5 cut(s)	11, 320, 368, 441, 715
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4V	TGCA	7 cut(s)	231, 305, 617, 728, 1001, 1028, 1054
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 590, 734, 767, 776
HpyF3I	CTNAG	4 cut(s)	435, 696, 711, 889
Hsp92II	CATG	3 cut(s)	473, 537, 654
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	4 cut(s)	528, 552, 607, 692
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	641
Lsp1109I	GCAGC	4 cut(s)	73, 211, 289, 1040
LweI	GCATC	1 cut(s)	64
MabI	ACCWGGT	1 cut(s)	1047
MaeI	CTAG	2 cut(s)	512, 956
MaeIII	GTNAC	2 cut(s)	279, 502
MalI	GATC	4 cut(s)	530, 554, 609, 694
MboI	GATC	4 cut(s)	528, 552, 607, 692
MboII	GAAGA	4 cut(s)	171, 371, 415, 971
MflI	RGATCY	2 cut(s)	607, 692
MhlI	GDGCHC	1 cut(s)	706
MluCI	AATT	8 cut(s)	8, 108, 127, 288, 421, 462, 489, 917
MlyI	GAGTC	3 cut(s)	139, 448, 956
MmeI	TCCRAC	3 cut(s)	276, 378, 454
MnlI	CCTC	7 cut(s)	358, 361, 632, 772, 898, 937, 1023
Mph1103I	ATGCAT	1 cut(s)	1003
MseI	TTAA	5 cut(s)	107, 212, 420, 785, 974
MslI	CAYNNNNRTG	1 cut(s)	649
MspR9I	CCNGG	1 cut(s)	1049
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	1049
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 590, 734, 767, 776
NdeII	GATC	4 cut(s)	528, 552, 607, 692
NlaIII	CATG	3 cut(s)	473, 537, 654
NlaIV	GGNNCC	1 cut(s)	1046
NsiI	ATGCAT	1 cut(s)	1003
NspI	RCATGY	2 cut(s)	537, 654
NspV	TTCGAA	1 cut(s)	182
PciI	ACATGT	1 cut(s)	533
PciSI	GCTCTTC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	305
PfeI	GAWTC	3 cut(s)	115, 578, 992
PflMI	CCANNNNNTGG	1 cut(s)	830
PkrI	GCNGC	5 cut(s)	88, 226, 304, 482, 1030
PleI	GAGTC	3 cut(s)	139, 447, 956
PpsI	GAGTC	3 cut(s)	139, 447, 956
PscI	ACATGT	1 cut(s)	533
PsiI	TTATAA	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	1047
PspGI	CCWGG	1 cut(s)	1047
PspN4I	GGNNCC	1 cut(s)	1046
PspPI	GGNCC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	1030
PsuI	RGATCY	2 cut(s)	607, 692
RseI	CAYNNNNRTG	1 cut(s)	649
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	5 cut(s)	107, 212, 420, 785, 974
SatI	GCNGC	5 cut(s)	87, 225, 303, 481, 1029
Sau3AI	GATC	4 cut(s)	528, 552, 607, 692
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	3 cut(s)	139, 448, 956
ScrFI	CCNGG	1 cut(s)	1049
SduI	GDGCHC	1 cut(s)	706
SexAI	ACCWGGT	1 cut(s)	1047
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	1026
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	649
SmlI	CTYRAG	3 cut(s)	121, 673, 763
SmoI	CTYRAG	3 cut(s)	121, 673, 763
Sse9I	AATT	8 cut(s)	8, 108, 127, 288, 421, 462, 489, 917
SsiI	CCGC	2 cut(s)	481, 1042
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	2 cut(s)	512, 956
StyD4I	CCNGG	1 cut(s)	1047
TaaI	ACNGT	1 cut(s)	508
TaqI	TCGA	2 cut(s)	182, 576
TasI	AATT	8 cut(s)	8, 108, 127, 288, 421, 462, 489, 917
TauI	GCSGC	1 cut(s)	483
TfiI	GAWTC	3 cut(s)	115, 578, 992
Tru1I	TTAA	5 cut(s)	107, 212, 420, 785, 974
Tru9I	TTAA	5 cut(s)	107, 212, 420, 785, 974
TscAI	CASTG	3 cut(s)	439, 831, 991
TseI	GCWGC	4 cut(s)	86, 224, 302, 1028
TspDTI	ATGAA	5 cut(s)	152, 387, 414, 867, 970
TspRI	CASTG	3 cut(s)	439, 831, 991
Van91I	CCANNNNNTGG	1 cut(s)	830
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	2 cut(s)	127, 288
XceI	RCATGY	2 cut(s)	537, 654
XspI	CTAG	2 cut(s)	512, 956
Zsp2I	ATGCAT	1 cut(s)	1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.