AT3G59920

guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002570
Physical Location & Seq
Forward (+)
22134951 .. 22138546
3596 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59920.1

Sequence Viewer

Length: 1335 bp
ATGGATGAAGAGTACGAGGTTATTGTTCTCGGCACCGGTCTCAAGGAGTGTATCCTCAGCGGTCTCCTTTCCGTCGATGGTGTCAAGGTGCTTCACATGGACAGGAATGACTACTATGGTGGAGAATCAACTTCCCTTAATCTCAATCAGCTTTGGAAGAAGTTCAGGGGAGAAGAGAAGGCTCCTGAGCATTTAGGCGCTAGCCGGGATTACAATGTTGACATGATGCCTAAGTTTATGATGGGAAATGGCAAGCTTGTTCGTACCCTTATTCATACAGATGTTACAAAGTATTTGTCCTTCAAAGCTGTTGATGGAAGCTATGTTTTCGTCAAAGGAAAGGTTCAAAAGGTGCCAGCTACTCCTATGGAGGCCCTGAAATCTTCTCTCATGGGCATATTTGAGAAACGTCGAGCCGGCAAGTTTTTCAGTTTTGTTCAAGAATACGATGAGAAGGACCCAAAAACACACGATGGAATGGATTTGACCAGAGTTACAACAAAGGAACTGATTGCGAAATATGGTCTTGATGGCAACACTATTGACTTTATTGGTCACGCAGTGGCACTTCACACGAATGACCAACATCTCGACCAACCCGCCTTTGATACTGTAATGAGAATGAAGCTCTATGCGGAATCTCTTGCACGTTTCCAAGGAACATCTCCATATATTTATCCTCTCTATGGGTTGGGAGAACTACCCCAGGCATTTGCACGACTTAGTGCTGTCTATGGTGGCACATATATGTTGAACAAACCTGAGTGCAAGGTAGAGTTTGACGAGGGAGGTAAGGTTATTGGTGTAACATCTGAGGGAGAGACTGCTAAATGCAAAAAGATTGTGTGTGACCCTTCATACCTGCCGAACAAGGTTAGGAAGATTGGCAGGGTTGCTCGGGCCATCGCCATTATGAGCCACCCGATTCCGAACACCAATGATTCTCACTCAGTGCAGGTCATCATACCCCAGAAACAGTTGGCCCGCAAATCGGATATGTATGTCTTCTGTTGTTCGTACTCCCACAACGTTGCTCCCAAGGGAAAATTCATTGCATTTGTGTCTACAGATGCAGAGACTGATAACCCTCAAACCGAACTAAAGCCTGGAACTGATCTTTTGGGTCCTGTTGATGAGATATTCTTCGACATGTATGATAGATACGAGCCTGTCAACGAGCCAGAGTTGGACAACTGCTTTATTTCAACGAGCTATGATGCTACAACACACTTTGAGACAACTGTTGCGGATGTGTTGAACATGTATACCCTAATCACCGGAAAGCAACTGGACCTAAGTGTTGACCTGAGTGCCGCAAGTGCTGCAGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

444

Amino Acids

49.54

Weight (kDa)

5.49

Isoelectric Point (pI)

26.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 1 - 433 7.2e-226 GDP dissociation inhibitor
Amino_oxidase PF01593 70 - 283 2.1e-06 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 870, 946
AccB1I GGYRCC 2 cut(s) 32, 352
AccI GTMKAC 2 cut(s) 1064, 1265
AciI CCGC 6 cut(s) 60, 600, 635, 985, 1247, 1314
AclI AACGTT 1 cut(s) 1029
AcsI RAATTY 1 cut(s) 1046
AdeI CACNNNGTG 2 cut(s) 562, 952
AfaI GTAC 3 cut(s) 14, 265, 1019
AfiI CCNNNNNNNGG 2 cut(s) 686, 991
AflIII ACRYGT 2 cut(s) 1149, 1260
AgeI ACCGGT 1 cut(s) 35
AgsI TTSAA 6 cut(s) 304, 347, 440, 754, 1206, 1258
AjnI CCWGG 2 cut(s) 705, 1105
AjuI GAANNNNNNNTTGG 2 cut(s) 1031, 1063
AluBI AGCT 7 cut(s) 151, 256, 308, 321, 359, 628, 1212
AluI AGCT 7 cut(s) 151, 256, 308, 321, 359, 628, 1212
Alw26I GTCTC 5 cut(s) 44, 68, 815, 1070, 1229
AlwNI CAGNNNCTG 1 cut(s) 1079
Ama87I CYCGRG 1 cut(s) 897
AoxI GGCC 3 cut(s) 372, 900, 981
ApeKI GCWGC 1 cut(s) 1322
ApoI RAATTY 1 cut(s) 1046
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AsiGI ACCGGT 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 6 cut(s) 373, 457, 900, 982, 1124, 1291
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 1267
AsuNHI GCTAGC 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 897
AvaII GGWCC 3 cut(s) 457, 1124, 1291
BanI GGYRCC 2 cut(s) 32, 352
BarI GAAGNNNNNNTAC 2 cut(s) 284, 316
BbsI GAAGAC 1 cut(s) 997
BbvCI CCTCAGC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 1309
BccI CCATC 6 cut(s) 71, 235, 308, 467, 524, 911
BciT130I CCWGG 2 cut(s) 707, 1107
BciVI GTATCC 1 cut(s) 62
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 5 cut(s) 44, 68, 815, 1070, 1229
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 2 cut(s) 1065, 1323
BfoI RGCGCY 1 cut(s) 201
BfuAI ACCTGC 2 cut(s) 870, 946
BfuI GTATCC 1 cut(s) 62
BisI GCNGC 2 cut(s) 1314, 1323
BlsI GCNGC 2 cut(s) 1315, 1324
Bme1390I CCNGG 3 cut(s) 206, 707, 1107
Bme18I GGWCC 3 cut(s) 457, 1124, 1291
BmeT110I CYCGRG 1 cut(s) 897
BmgT120I GGNCC 6 cut(s) 373, 457, 900, 982, 1124, 1291
BmiI GGNNCC 5 cut(s) 34, 183, 354, 459, 1125
BmrFI CCNGG 3 cut(s) 206, 707, 1107
BmsI GCATC 3 cut(s) 216, 1060, 1207
BmtI GCTAGC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 997
Bpu10I CCTNAGC 2 cut(s) 56, 186
BpuEI CTTGAG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 206
BsaI GGTCTC 2 cut(s) 44, 68
BsaJI CCNNGG 3 cut(s) 655, 705, 1038
BsaWI WCCGGW 2 cut(s) 35, 1277
BsaXI ACNNNNNCTCC 2 cut(s) 780, 810
Bsc4I CCNNNNNNNGG 2 cut(s) 686, 991
Bse118I RCCGGY 2 cut(s) 35, 416
Bse1I ACTGG 1 cut(s) 1293
Bse3DI GCAATG 1 cut(s) 1050
BseBI CCWGG 2 cut(s) 707, 1107
BseDI CCNNGG 3 cut(s) 655, 705, 1038
BseGI GGATG 2 cut(s) 10, 1255
BseLI CCNNNNNNNGG 2 cut(s) 686, 991
BseMI GCAATG 1 cut(s) 1050
BseMII CTCAG 6 cut(s) 70, 177, 753, 804, 963, 1298
BseNI ACTGG 1 cut(s) 1293
BseXI GCAGC 1 cut(s) 1309
BsgI GTGCAG 1 cut(s) 974
BshFI GGCC 3 cut(s) 374, 902, 983
BshNI GGYRCC 2 cut(s) 32, 352
BshTI ACCGGT 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 897
BsiSI CCGG 4 cut(s) 36, 205, 417, 1278
BslI CCNNNNNNNGG 2 cut(s) 686, 991
BsmAI GTCTC 5 cut(s) 44, 68, 815, 1070, 1229
BsnI GGCC 3 cut(s) 374, 902, 983
Bso31I GGTCTC 2 cut(s) 44, 68
BsoBI CYCGRG 1 cut(s) 897
Bsp143I GATC 1 cut(s) 1114
BspACI CCGC 6 cut(s) 60, 600, 635, 985, 1247, 1314
BspANI GGCC 3 cut(s) 374, 902, 983
BspCNI CTCAG 6 cut(s) 69, 178, 754, 805, 962, 1299
BspLI GGNNCC 5 cut(s) 34, 183, 354, 459, 1125
BspMAI CTGCAG 1 cut(s) 1327
BspMI ACCTGC 2 cut(s) 870, 946
BspOI GCTAGC 1 cut(s) 204
BspT107I GGYRCC 2 cut(s) 32, 352
BspTNI GGTCTC 2 cut(s) 44, 68
BsrDI GCAATG 1 cut(s) 1050
BsrFI RCCGGY 2 cut(s) 35, 416
BsrI ACTGG 1 cut(s) 1293
BssAI RCCGGY 2 cut(s) 35, 416
BssECI CCNNGG 3 cut(s) 655, 705, 1038
BssMI GATC 1 cut(s) 1114
BssNAI GTATAC 1 cut(s) 1266
BssT1I CCWWGG 2 cut(s) 655, 1038
Bst1107I GTATAC 1 cut(s) 1266
Bst2UI CCWGG 2 cut(s) 707, 1107
Bst4CI ACNGT 3 cut(s) 613, 978, 1243
Bst6I CTCTTC 2 cut(s) 3, 168
BstAPI GCANNNNNTGC 1 cut(s) 1322
BstC8I GCNNGC 5 cut(s) 202, 254, 357, 418, 985
BstDEI CTNAG 9 cut(s) 56, 186, 231, 722, 762, 813, 949, 1295, 1307
BstF5I GGATG 2 cut(s) 10, 1255
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 1 cut(s) 1117
BstMAI GTCTC 5 cut(s) 44, 68, 815, 1070, 1229
BstMBI GATC 1 cut(s) 1114
BstMWI GCNNNNNNNGC 2 cut(s) 1319, 1322
BstNI CCWGG 2 cut(s) 707, 1107
BstNSI RCATGY 2 cut(s) 1153, 1264
BstSCI CCNGG 3 cut(s) 204, 705, 1105
BstSFI CTRYAG 2 cut(s) 1065, 1323
BstV1I GCAGC 1 cut(s) 1309
BstV2I GAAGAC 1 cut(s) 997
BstZ17I GTATAC 1 cut(s) 1266
BsuI GTATCC 1 cut(s) 62
BsuRI GGCC 3 cut(s) 374, 902, 983
BtgZI GCGATG 1 cut(s) 889
BtsCI GGATG 2 cut(s) 10, 1255
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 567, 957
BveI ACCTGC 2 cut(s) 870, 946
Cac8I GCNNGC 5 cut(s) 202, 254, 357, 418, 985
CaiI CAGNNNCTG 1 cut(s) 1079
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 2 cut(s) 35, 416
Cfr13I GGNCC 6 cut(s) 373, 457, 900, 982, 1124, 1291
Csp6I GTAC 3 cut(s) 13, 264, 1018
CspAI ACCGGT 1 cut(s) 35
CviAII CATG 5 cut(s) 97, 223, 391, 1150, 1261
CviQI GTAC 3 cut(s) 13, 264, 1018
DdeI CTNAG 9 cut(s) 56, 186, 231, 722, 762, 813, 949, 1295, 1307
DpnI GATC 1 cut(s) 1116
DpnII GATC 1 cut(s) 1114
DraIII CACNNNGTG 2 cut(s) 562, 952
Eam1104I CTCTTC 2 cut(s) 3, 168
EarI CTCTTC 2 cut(s) 3, 168
Eco130I CCWWGG 2 cut(s) 655, 1038
Eco31I GGTCTC 2 cut(s) 44, 68
Eco47I GGWCC 3 cut(s) 457, 1124, 1291
Eco88I CYCGRG 1 cut(s) 897
EcoO109I RGGNCCY 3 cut(s) 373, 457, 1124
EcoRII CCWGG 2 cut(s) 705, 1105
EcoT14I CCWWGG 2 cut(s) 655, 1038
ErhI CCWWGG 2 cut(s) 655, 1038
FaeI CATG 5 cut(s) 100, 226, 394, 1153, 1264
FatI CATG 5 cut(s) 96, 222, 390, 1149, 1260
FauI CCCGC 2 cut(s) 607, 992
FblI GTMKAC 2 cut(s) 1064, 1265
Fnu4HI GCNGC 2 cut(s) 1314, 1323
FokI GGATG 2 cut(s) 17, 1262
Fsp4HI GCNGC 2 cut(s) 1314, 1323
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 199
GluI GCNGC 2 cut(s) 1314, 1323
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 3 cut(s) 374, 902, 983
HapII CCGG 4 cut(s) 36, 205, 417, 1278
HhaI GCGC 1 cut(s) 200
Hin1II CATG 5 cut(s) 100, 226, 394, 1153, 1264
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HincII GTYRAC 3 cut(s) 220, 1174, 1303
HindII GTYRAC 3 cut(s) 220, 1174, 1303
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 4 cut(s) 125, 638, 925, 941
HpaII CCGG 4 cut(s) 36, 205, 417, 1278
HphI GGTGA 1 cut(s) 1267
Hpy166II GTNNAC 5 cut(s) 220, 1065, 1174, 1266, 1303
Hpy188I TCNGA 3 cut(s) 814, 930, 994
Hpy188III TCNNGA 4 cut(s) 185, 440, 527, 590
Hpy8I GTNNAC 5 cut(s) 220, 1065, 1174, 1266, 1303
Hpy99I CGWCG 2 cut(s) 77, 414
HpyAV CCTTC 4 cut(s) 172, 310, 448, 864
HpyCH4III ACNGT 3 cut(s) 613, 978, 1243
HpyCH4IV ACGT 3 cut(s) 409, 649, 1029
HpyCH4V TGCA 8 cut(s) 647, 716, 768, 834, 955, 1055, 1073, 1325
HpyF10VI GCNNNNNNNGC 2 cut(s) 1319, 1322
HpyF3I CTNAG 9 cut(s) 56, 186, 231, 722, 762, 813, 949, 1295, 1307
HpySE526I ACGT 3 cut(s) 409, 649, 1029
Hsp92II CATG 5 cut(s) 100, 226, 394, 1153, 1264
HspAI GCGC 1 cut(s) 198
KroI GCCGGC 1 cut(s) 416
KroNI GCCGGC 1 cut(s) 418
Kzo9I GATC 1 cut(s) 1114
LmnI GCTCC 2 cut(s) 187, 1039
Lsp1109I GCAGC 1 cut(s) 1309
LweI GCATC 3 cut(s) 216, 1060, 1207
MaeI CTAG 1 cut(s) 201
MaeII ACGT 3 cut(s) 409, 649, 1029
MaeIII GTNAC 5 cut(s) 283, 493, 554, 805, 848
MalI GATC 1 cut(s) 1116
MboI GATC 1 cut(s) 1114
MboII GAAGA 7 cut(s) 20, 169, 185, 375, 892, 997, 1135
MluCI AATT 1 cut(s) 1046
MmeI TCCRAC 1 cut(s) 1167
MnlI CCTC 9 cut(s) 10, 65, 364, 690, 778, 782, 808, 1098, 1321
MroNI GCCGGC 1 cut(s) 416
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 3 cut(s) 279, 576, 746
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 4 cut(s) 36, 205, 417, 1278
MspR9I CCNGG 3 cut(s) 206, 707, 1107
MvaI CCWGG 2 cut(s) 707, 1107
MwoI GCNNNNNNNGC 2 cut(s) 1319, 1322
NaeI GCCGGC 1 cut(s) 418
NciI CCSGG 1 cut(s) 206
NdeII GATC 1 cut(s) 1114
NgoMIV GCCGGC 1 cut(s) 416
NheI GCTAGC 1 cut(s) 200
NlaIII CATG 5 cut(s) 100, 226, 394, 1153, 1264
NlaIV GGNNCC 5 cut(s) 34, 183, 354, 459, 1125
NmeAIII GCCGAG 1 cut(s) 9
NmuCI GTSAC 2 cut(s) 554, 848
NspI RCATGY 2 cut(s) 1153, 1264
PciI ACATGT 2 cut(s) 1149, 1260
PdiI GCCGGC 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 4 cut(s) 125, 638, 925, 941
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 2 cut(s) 1315, 1324
PpuMI RGGWCCY 2 cut(s) 457, 1124
PscI ACATGT 2 cut(s) 1149, 1260
Psp1406I AACGTT 1 cut(s) 1029
Psp5II RGGWCCY 2 cut(s) 457, 1124
Psp6I CCWGG 2 cut(s) 705, 1105
PspGI CCWGG 2 cut(s) 705, 1105
PspN4I GGNNCC 5 cut(s) 34, 183, 354, 459, 1125
PspPI GGNCC 6 cut(s) 373, 457, 900, 982, 1124, 1291
PspPPI RGGWCCY 2 cut(s) 457, 1124
PstI CTGCAG 1 cut(s) 1327
PstNI CAGNNNCTG 1 cut(s) 1079
RsaI GTAC 3 cut(s) 14, 265, 1019
RsaNI GTAC 3 cut(s) 13, 264, 1018
RseI CAYNNNNRTG 3 cut(s) 279, 576, 746
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 1314, 1323
Sau3AI GATC 1 cut(s) 1114
Sau96I GGNCC 6 cut(s) 373, 457, 900, 982, 1124, 1291
ScrFI CCNGG 3 cut(s) 206, 707, 1107
SfaNI GCATC 3 cut(s) 216, 1060, 1207
SfcI CTRYAG 2 cut(s) 1065, 1323
SinI GGWCC 3 cut(s) 457, 1124, 1291
SmiMI CAYNNNNRTG 3 cut(s) 279, 576, 746
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 1046
SsiI CCGC 6 cut(s) 60, 600, 635, 985, 1247, 1314
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 3 cut(s) 204, 705, 1105
StyI CCWWGG 2 cut(s) 655, 1038
TaaI ACNGT 3 cut(s) 613, 978, 1243
TaiI ACGT 3 cut(s) 412, 652, 1032
TaqI TCGA 4 cut(s) 75, 412, 591, 1146
TasI AATT 1 cut(s) 1046
TauI GCSGC 1 cut(s) 1316
TfiI GAWTC 4 cut(s) 125, 638, 925, 941
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 2 cut(s) 567, 957
TseFI GTSAC 2 cut(s) 554, 848
TseI GCWGC 1 cut(s) 1322
Tsp45I GTSAC 2 cut(s) 554, 848
TspDTI ATGAA 5 cut(s) 21, 263, 638, 846, 1039
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 2 cut(s) 567, 957
VpaK11BI GGWCC 3 cut(s) 457, 1124, 1291
XapI RAATTY 1 cut(s) 1046
XceI RCATGY 2 cut(s) 1153, 1264
XmiI GTMKAC 2 cut(s) 1064, 1265
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.