Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002570

Physical Location & Seq

Genomic Coordinates Reverse (-)

54750605 .. 54751207

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0452600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTCACTTAGGCTTTCATGCCCAATACCATGGTGCAGTTTATGAAATAGAATTCGAGAAAATTGAGAAACTAGAGAAACAAGAGTATGAAGATTCTGTAGGCGGCGTTGGTGTTGATCCATCTACTCTGCCACTTCTCGACCCGGTATTGGAGTTCTTTGATAAGAGGTGGGAGATCCCGGAGATCTGTATATTCGATGGTGCGAGGTTTGGCTCCAAGGTATACACCATGTTAAATGAAATCAAGTGGCCTTATCGCTCGCCCTTCAGACCCACCGATGCATTTTTCTTTGACACAAGTAACTTAGACTCTGATGTTCAGCAGATATCTCCGCCTAAAACACCCAAGACATGGTGTGCAGTTATATCTGCATATGGAATGCTTTATTATCTTGCAGAACCAACATGCTTCCCATATATTAATGAACATTCGTTTGAGCGATATGATCCCACCAGCGATTCTTGGGAGTCGTTGCCTTCGTATCCAGGTTATTCTCTAGACCAGTTCCAAACGATGATATCAGGTCATGCTGTTTGTTATGGTTATATATTAATTTCAATGATTGGTGAAGAGGAATGTCACGCCCCGAATTTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

200

Amino Acids

23.05

Weight (kDa)

4.53

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44100 AT2G44100 AT3G59920
fragaria_vesca	FvH4_1g00070
malus_domestica	MD02G1000900.v1.1 MD15G1141900.v1.1
prunus_persica	Prupe.7G271300_v2.0.a1 Prupe.7G271300_v2.0.a1
pyrus_communis	pycom15g12810 pycom290g00070
rosa_chinensis	RchiOBHm_Chr2g0084291 RchiOBHm_Chr7g0209621 RchiOBHm_Chr7g0234411
rosa_laevigata	RLG00000015607
rosa_multiflora	Rmu_sc0003129.1_g000011 Rmu_sc0004787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00156180 Rroxscaffold_6G00407240
rosa_rugosa	Rorug01G0452500 Rorug01G0452600 Rorug03G0278400 Rorug03G0278500 Rorug03G0278600 Rorug07G0114700
rosa_samantha	Rh2AG000900 Rh2BG000800 Rh2BG264200 Rh2CG000700 Rh2DG000900 Rh6AG218100 Rh7AG248600 Rh7AG381600 Rh7CG264600 Rh7CG401100 Rh7CG461200 Rh7DG254600
rosa_wichuraiana	Rw2G000070 Rw2G022390 Rw2G045720 Rw5G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	2 cut(s)	105, 335
AclWI	GGATC	3 cut(s)	113, 172, 443
AcsI	RAATTY	2 cut(s)	53, 592
AcuI	CTGAAG	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	151, 354
AgsI	TTSAA	2 cut(s)	561, 599
AjnI	CCWGG	1 cut(s)	487
AlwI	GGATC	3 cut(s)	113, 172, 443
AoxI	GGCC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	53, 592
AseI	ATTAAT	2 cut(s)	423, 554
AsuC2I	CCSGG	2 cut(s)	146, 182
AsuHPI	GGTGA	1 cut(s)	581
BccI	CCATC	2 cut(s)	130, 194
BciT130I	CCWGG	1 cut(s)	489
BciVI	GTATCC	1 cut(s)	495
BcnI	CCSGG	2 cut(s)	146, 182
BfaI	CTAG	2 cut(s)	74, 500
BfmI	CTRYAG	1 cut(s)	99
BfuI	GTATCC	1 cut(s)	495
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	3 cut(s)	146, 182, 489
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	3 cut(s)	146, 182, 489
BmsI	GCATC	1 cut(s)	271
BpuMI	CCSGG	2 cut(s)	146, 182
BsaJI	CCNNGG	2 cut(s)	31, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 354
Bse1I	ACTGG	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	31, 219
BseLI	CCNNNNNNNGG	2 cut(s)	151, 354
BseNI	ACTGG	1 cut(s)	505
BsgI	GTGCAG	2 cut(s)	57, 381
BshFI	GGCC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	146, 182
BslI	CCNNNNNNNGG	2 cut(s)	151, 354
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	253
Bsp143I	GATC	4 cut(s)	118, 177, 186, 448
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	2 cut(s)	105, 335
BspANI	GGCC	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	3 cut(s)	113, 172, 443
BsrI	ACTGG	1 cut(s)	505
BssECI	CCNNGG	2 cut(s)	31, 219
BssMI	GATC	4 cut(s)	118, 177, 186, 448
BssNAI	GTATAC	1 cut(s)	226
BssT1I	CCWWGG	2 cut(s)	31, 219
Bst1107I	GTATAC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	489
Bst6I	CTCTTC	1 cut(s)	567
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	10, 307
BstDSI	CCRYGG	1 cut(s)	31
BstKTI	GATC	4 cut(s)	121, 180, 189, 451
BstMBI	GATC	4 cut(s)	118, 177, 186, 448
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	411
BstSCI	CCNGG	3 cut(s)	144, 180, 487
BstSFI	CTRYAG	1 cut(s)	99
BstX2I	RGATCY	2 cut(s)	177, 186
BstXI	CCANNNNNNTGG	1 cut(s)	32
BstYI	RGATCY	2 cut(s)	177, 186
BstZ17I	GTATAC	1 cut(s)	226
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	1 cut(s)	253
BtgI	CCRYGG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	263
CviAII	CATG	6 cut(s)	20, 32, 232, 354, 408, 530
CviJI	RGCY	4 cut(s)	5, 15, 216, 253
CviKI_1	RGCY	4 cut(s)	5, 15, 216, 253
DdeI	CTNAG	2 cut(s)	10, 307
DpnI	GATC	4 cut(s)	120, 179, 188, 450
DpnII	GATC	4 cut(s)	118, 177, 186, 448
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
EciI	GGCGGA	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	31, 219
Eco32I	GATATC	2 cut(s)	330, 522
Eco57I	CTGAAG	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	487
EcoRV	GATATC	2 cut(s)	330, 522
EcoT14I	CCWWGG	2 cut(s)	31, 219
EcoT22I	ATGCAT	1 cut(s)	286
ErhI	CCWWGG	2 cut(s)	31, 219
FaeI	CATG	6 cut(s)	23, 35, 235, 357, 411, 533
FatI	CATG	6 cut(s)	19, 31, 231, 353, 407, 529
FauNDI	CATATG	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	2 cut(s)	74, 500
GluI	GCNGC	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	2 cut(s)	146, 182
Hin1II	CATG	6 cut(s)	23, 35, 235, 357, 411, 533
HinfI	GANTC	4 cut(s)	95, 311, 461, 470
HpaII	CCGG	2 cut(s)	146, 182
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	272, 316
Hpy188III	TCNNGA	3 cut(s)	58, 140, 500
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	277, 489
HpyCH4V	TGCA	5 cut(s)	38, 284, 362, 374, 398
HpyF3I	CTNAG	2 cut(s)	10, 307
Hsp92II	CATG	6 cut(s)	23, 35, 235, 357, 411, 533
Kzo9I	GATC	4 cut(s)	118, 177, 186, 448
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	7 cut(s)	159, 195, 469, 474, 501, 510, 518
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	2 cut(s)	74, 500
MaeIII	GTNAC	2 cut(s)	302, 581
MalI	GATC	4 cut(s)	120, 179, 188, 450
MboI	GATC	4 cut(s)	118, 177, 186, 448
MboII	GAAGA	2 cut(s)	104, 584
MflI	RGATCY	2 cut(s)	177, 186
MluCI	AATT	4 cut(s)	53, 63, 555, 592
MlyI	GAGTC	2 cut(s)	305, 479
MnlI	CCTC	3 cut(s)	162, 201, 568
Mph1103I	ATGCAT	1 cut(s)	286
MseI	TTAA	3 cut(s)	236, 423, 554
MspI	CCGG	2 cut(s)	146, 182
MspR9I	CCNGG	3 cut(s)	146, 182, 489
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	489
NciI	CCSGG	2 cut(s)	146, 182
NcoI	CCATGG	1 cut(s)	31
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	4 cut(s)	118, 177, 186, 448
NlaIII	CATG	6 cut(s)	23, 35, 235, 357, 411, 533
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	581
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	479
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	95, 461
PflMI	CCANNNNNTGG	1 cut(s)	354
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	2 cut(s)	305, 478
PpsI	GAGTC	2 cut(s)	305, 478
PshBI	ATTAAT	2 cut(s)	423, 554
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	177, 186
SaqAI	TTAA	3 cut(s)	236, 423, 554
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	4 cut(s)	118, 177, 186, 448
SchI	GAGTC	2 cut(s)	305, 479
ScrFI	CCNGG	3 cut(s)	146, 182, 489
SetI	ASST	5 cut(s)	173, 212, 225, 493, 529
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	99
Sse9I	AATT	4 cut(s)	53, 63, 555, 592
SsiI	CCGC	2 cut(s)	105, 335
SspMI	CTAG	2 cut(s)	74, 500
StyD4I	CCNGG	3 cut(s)	144, 180, 487
StyI	CCWWGG	2 cut(s)	31, 219
TaqI	TCGA	3 cut(s)	57, 141, 198
TasI	AATT	4 cut(s)	53, 63, 555, 592
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	95, 461
Tru1I	TTAA	3 cut(s)	236, 423, 554
Tru9I	TTAA	3 cut(s)	236, 423, 554
TseFI	GTSAC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	5 cut(s)	8, 60, 105, 255, 441
Van91I	CCANNNNNTGG	1 cut(s)	354
VspI	ATTAAT	2 cut(s)	423, 554
XapI	RAATTY	2 cut(s)	53, 592
XbaI	TCTAGA	1 cut(s)	499
XceI	RCATGY	1 cut(s)	411
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	2 cut(s)	74, 500
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.