Rw5G030850

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002570
Physical Location & Seq
Forward (+)
49309550 .. 49318389
8840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030850.1

Sequence Viewer

Length: 1041 bp
ATGTCATATGGGAACTGCAGAACACTGATATTTTGCTCTATTGAAGCTGTTCTACTTTGTGAGTTACTATCTTTGTATGCATTAAAAGTTCTACACATGGATAGGAATGACTATTACGGAGGAGAGTGTGCATCACTTAATCTTATTCAGCTCTGGAAGAGGTTCAGGGGAGATGATAAGCCCCCAGCCCAGTTGGGTTCTAGTAGGGATTATAATGTGGACATGGTCCCTAAGTTTATGATGGCCAATGGAACTCTAGTGCGTGTCCTCACTCATACAGATGTTACCAAGTATTTGTCCTTCAAAGCTGTGGATGGTAGTTTTGTCTATAATAAAGGAAAGGTTCACAAGGTTCCAGCAAATGATATGGAGCCACTTAAATCTCCACTCATGGGTCTATTTGAAAAGCGCCGTGCCCGCAAGTTCTTCATAGAGATGATCCTTTATGTGGAATCTATTGCACGTTTTCAAGGAGGATCTCCATACATTTATCCTTTGTATGGACTAGGAGAGCTTCCTCAGGCATTTGCACGACTTAGTGCGGTTTATGGTGGTACTTATATGCTTAATAAACCTGAATGCAAGGTGGAGTTCAATGAGGAAGGGAAAGTTATTGGTGTCACATCTGAAGGTGAAACTGCCAAGTGCACTAAAGTTGTCTGTGACCCTTCTTACTTACCCAACAAGGTTGCAAGGGCTATAGCCATAATGAGCCACCCAATTCCAAACACAAATGATTCTCATTCAGTGCAGGTTATCCTACCAAAAAAGCAGCTGGGTCACAGATCAGATATCGCCGCAACTGCGCGGCAGTTGCGCTTGGCATTTGCCGAGCCATCTGCCGAGCTATCAGACAATACTTTTAACACATACCTACCATCTATGCGTTTGTTAGACAACTGTTACTTTGGCACTCACTTTCAGTCTCTGCTTCCCAAAGACCTAAGGCCCCGTATGTTCACTCTGAATACTGACTTTCTTAGTGACATTTCAACTTCTTCACAACCAATGTTGCAACAAAATGAGGTAACTCTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

346

Amino Acids

38.98

Weight (kDa)

8.65

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 14 - 144 1e-61 GDP dissociation inhibitor
GDI PF00996 146 - 266 1.6e-55 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 742
AccII CGCG 1 cut(s) 808
AciI CCGC 4 cut(s) 418, 542, 798, 808
AclWI GGATC 2 cut(s) 433, 484
AcoI YGGCCR 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 648
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 3 cut(s) 392, 448, 500
AgsI TTSAA 6 cut(s) 44, 304, 404, 470, 595, 993
AluBI AGCT 6 cut(s) 47, 151, 308, 514, 775, 847
AluI AGCT 6 cut(s) 47, 151, 308, 514, 775, 847
Alw21I GWGCWC 1 cut(s) 650
Alw26I GTCTC 1 cut(s) 930
Alw44I GTGCAC 1 cut(s) 646
AlwI GGATC 2 cut(s) 433, 484
AlwNI CAGNNNCTG 1 cut(s) 928
AoxI GGCC 2 cut(s) 243, 947
ApaLI GTGCAC 1 cut(s) 646
ApeKI GCWGC 1 cut(s) 772
Asp700I GAANNNNTTC 2 cut(s) 48, 161
AspLEI GCGC 3 cut(s) 411, 808, 819
AspS9I GGNCC 2 cut(s) 226, 948
AsuHPI GGTGA 1 cut(s) 644
AvaII GGWCC 1 cut(s) 226
AxyI CCTNAGG 2 cut(s) 519, 944
BaeGI GKGCMC 2 cut(s) 418, 650
BalI TGGCCA 1 cut(s) 245
BarI GAAGNNNNNNTAC 4 cut(s) 36, 68, 284, 316
Bbv12I GWGCWC 1 cut(s) 650
BbvI GCAGC 1 cut(s) 784
BccI CCATC 4 cut(s) 235, 308, 844, 886
BceAI ACGGC 1 cut(s) 396
BcgI CGANNNNNNTGC 2 cut(s) 821, 855
BcoDI GTCTC 1 cut(s) 930
BfaI CTAG 3 cut(s) 201, 257, 506
BfmI CTRYAG 2 cut(s) 16, 699
BfoI RGCGCY 1 cut(s) 412
BfuAI ACCTGC 1 cut(s) 742
BisI GCNGC 3 cut(s) 773, 798, 809
BlsI GCNGC 3 cut(s) 774, 799, 810
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 226, 948
BmiI GGNNCC 4 cut(s) 228, 354, 372, 950
BmrI ACTGGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 3 cut(s) 392, 448, 500
Bse1I ACTGG 1 cut(s) 190
Bse21I CCTNAGG 2 cut(s) 519, 944
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 3 cut(s) 392, 448, 500
BseMII CTCAG 1 cut(s) 533
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 135
BseSI GKGCMC 2 cut(s) 418, 650
BseXI GCAGC 1 cut(s) 784
BseYI CCCAGC 2 cut(s) 184, 775
BsgI GTGCAG 1 cut(s) 770
Bsh1236I CGCG 1 cut(s) 808
BshFI GGCC 2 cut(s) 245, 949
BsiHKAI GWGCWC 1 cut(s) 650
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 3 cut(s) 392, 448, 500
BsmAI GTCTC 1 cut(s) 930
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 2 cut(s) 245, 949
Bsp1286I GDGCHC 2 cut(s) 418, 650
Bsp143I GATC 3 cut(s) 438, 476, 785
BspACI CCGC 4 cut(s) 418, 542, 798, 808
BspANI GGCC 2 cut(s) 245, 949
BspCNI CTCAG 1 cut(s) 532
BspFNI CGCG 1 cut(s) 808
BspLI GGNNCC 4 cut(s) 228, 354, 372, 950
BspMAI CTGCAG 1 cut(s) 20
BspMI ACCTGC 1 cut(s) 742
BspPI GGATC 2 cut(s) 433, 484
BsrI ACTGG 1 cut(s) 190
BssMI GATC 3 cut(s) 438, 476, 785
Bst4CI ACNGT 1 cut(s) 902
Bst6I CTCTTC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 5 cut(s) 231, 519, 536, 944, 980
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 808
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 3 cut(s) 411, 808, 819
BstKTI GATC 3 cut(s) 441, 479, 788
BstMAI GTCTC 1 cut(s) 930
BstMBI GATC 3 cut(s) 438, 476, 785
BstMWI GCNNNNNNNGC 3 cut(s) 417, 803, 814
BstSFI CTRYAG 2 cut(s) 16, 699
BstSLI GKGCMC 2 cut(s) 418, 650
BstUI CGCG 1 cut(s) 808
BstV1I GCAGC 1 cut(s) 784
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
Bsu36I CCTNAGG 2 cut(s) 519, 944
BsuRI GGCC 2 cut(s) 245, 949
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 23, 753
BveI ACCTGC 1 cut(s) 742
Cac8I GCNNGC 1 cut(s) 418
CaiI CAGNNNCTG 1 cut(s) 928
CfoI GCGC 3 cut(s) 411, 808, 819
Cfr13I GGNCC 2 cut(s) 226, 948
Csp6I GTAC 1 cut(s) 555
CviAII CATG 3 cut(s) 97, 223, 391
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 5 cut(s) 231, 519, 536, 944, 980
DpnI GATC 3 cut(s) 440, 478, 787
DpnII GATC 3 cut(s) 438, 476, 785
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 793
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 648
Eco81I CCTNAGG 2 cut(s) 519, 944
EcoO109I RGGNCCY 1 cut(s) 948
EcoRV GATATC 1 cut(s) 793
EcoT22I ATGCAT 1 cut(s) 82
FaeI CATG 3 cut(s) 100, 226, 394
FaqI GGGAC 1 cut(s) 212
FatI CATG 3 cut(s) 96, 222, 390
FauI CCCGC 1 cut(s) 425
FauNDI CATATG 1 cut(s) 7
Fnu4HI GCNGC 3 cut(s) 773, 798, 809
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 773, 798, 809
FspBI CTAG 3 cut(s) 201, 257, 506
GlaI GCGC 3 cut(s) 410, 807, 818
GluI GCNGC 3 cut(s) 773, 798, 809
GsaI CCCAGC 2 cut(s) 188, 779
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 2 cut(s) 245, 949
HhaI GCGC 3 cut(s) 411, 808, 819
Hin1II CATG 3 cut(s) 100, 226, 394
Hin6I GCGC 3 cut(s) 409, 806, 817
HinP1I GCGC 3 cut(s) 409, 806, 817
HinfI GANTC 2 cut(s) 452, 737
HphI GGTGA 1 cut(s) 644
Hpy166II GTNNAC 4 cut(s) 220, 346, 648, 960
Hpy188I TCNGA 4 cut(s) 628, 790, 853, 966
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 4 cut(s) 220, 346, 648, 960
HpyAV CCTTC 4 cut(s) 310, 596, 623, 678
HpyCH4III ACNGT 1 cut(s) 902
HpyCH4IV ACGT 1 cut(s) 463
HpyF10VI GCNNNNNNNGC 3 cut(s) 417, 803, 814
HpyF3I CTNAG 5 cut(s) 231, 519, 536, 944, 980
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 3 cut(s) 100, 226, 394
HspAI GCGC 3 cut(s) 409, 806, 817
Kzo9I GATC 3 cut(s) 438, 476, 785
LmnI GCTCC 1 cut(s) 370
LpnPI CCDG 9 cut(s) 139, 151, 198, 203, 369, 506, 588, 737, 761
Lsp1109I GCAGC 1 cut(s) 784
LweI GCATC 1 cut(s) 140
MaeI CTAG 3 cut(s) 201, 257, 506
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 8 cut(s) 63, 283, 619, 662, 779, 902, 983, 1027
MalI GATC 3 cut(s) 440, 478, 787
MboI GATC 3 cut(s) 438, 476, 785
MboII GAAGA 3 cut(s) 169, 418, 990
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 2 cut(s) 418, 650
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 1 cut(s) 720
MluNI TGGCCA 1 cut(s) 245
MnlI CCTC 7 cut(s) 113, 153, 278, 467, 528, 592, 1018
Mox20I TGGCCA 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 82
MroXI GAANNNNTTC 2 cut(s) 48, 161
MscI TGGCCA 1 cut(s) 245
MseI TTAA 5 cut(s) 83, 138, 378, 567, 864
MslI CAYNNNNRTG 2 cut(s) 279, 434
Msp20I TGGCCA 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 775
Mva1269I GAATGC 1 cut(s) 584
MvnI CGCG 1 cut(s) 808
MwoI GCNNNNNNNGC 3 cut(s) 417, 803, 814
NdeI CATATG 1 cut(s) 7
NdeII GATC 3 cut(s) 438, 476, 785
NlaIII CATG 3 cut(s) 100, 226, 394
NlaIV GGNNCC 4 cut(s) 228, 354, 372, 950
NmeAIII GCCGAG 2 cut(s) 856, 868
NmuCI GTSAC 4 cut(s) 619, 662, 779, 983
NsiI ATGCAT 1 cut(s) 82
PctI GAATGC 1 cut(s) 584
PdmI GAANNNNTTC 2 cut(s) 48, 161
PfeI GAWTC 2 cut(s) 452, 737
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 3 cut(s) 774, 799, 810
PsiI TTATAA 1 cut(s) 213
PspFI CCCAGC 2 cut(s) 184, 775
PspN4I GGNNCC 4 cut(s) 228, 354, 372, 950
PspPI GGNCC 2 cut(s) 226, 948
PstI CTGCAG 1 cut(s) 20
PstNI CAGNNNCTG 1 cut(s) 928
PsuI RGATCY 1 cut(s) 476
PsyI GACNNNGTC 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 775
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
RseI CAYNNNNRTG 2 cut(s) 279, 434
SaqAI TTAA 5 cut(s) 83, 138, 378, 567, 864
SatI GCNGC 3 cut(s) 773, 798, 809
Sau3AI GATC 3 cut(s) 438, 476, 785
Sau96I GGNCC 2 cut(s) 226, 948
SduI GDGCHC 2 cut(s) 418, 650
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 2 cut(s) 16, 699
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 2 cut(s) 279, 434
Sse9I AATT 1 cut(s) 720
SsiI CCGC 4 cut(s) 418, 542, 798, 808
SspMI CTAG 3 cut(s) 201, 257, 506
TaaI ACNGT 1 cut(s) 902
TaiI ACGT 1 cut(s) 466
TasI AATT 1 cut(s) 720
TauI GCSGC 2 cut(s) 800, 811
TfiI GAWTC 2 cut(s) 452, 737
Tru1I TTAA 5 cut(s) 83, 138, 378, 567, 864
Tru9I TTAA 5 cut(s) 83, 138, 378, 567, 864
TscAI CASTG 2 cut(s) 30, 753
TseFI GTSAC 4 cut(s) 619, 662, 779, 983
TseI GCWGC 1 cut(s) 772
Tsp45I GTSAC 4 cut(s) 619, 662, 779, 983
TspDTI ATGAA 1 cut(s) 418
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 2 cut(s) 30, 753
Tth111I GACNNNGTC 1 cut(s) 224
VneI GTGCAC 1 cut(s) 646
VpaK11BI GGWCC 1 cut(s) 226
XmnI GAANNNNTTC 2 cut(s) 48, 161
XspI CTAG 3 cut(s) 201, 257, 506
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.