Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002570

Physical Location & Seq

Genomic Coordinates Forward (+)

25929449 .. 25948399

Gene Structure 18951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG264600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTTCTTGAGAACTCCGTCCATGGAGCCTCTGATCCCGGCCTCCAGGTTCTATACATGGATAGGAATGACTATTACGGAGGAGAGTGTGCATCACTTAATCTTATTCAGCTGTGGAAGAGGTTCAGGGGAGATGATAAGCCCCAGCACAGTTGGGCTCTAGTAGGGATAGTTTATGATGGCCAATGGAACTCTAATGCGTCTGTCGATGGCGGTTTTGTCTATAATAAAGGAAAGGTTCACAAGGTTCCAGCAACTGACATGGAGGCACTTAAATCTCCACTCATGGGTCTATTTGAAAAGCGCCATGCCCGCAAGTTCTTCATATATGTTCAAGATTATAATGAAAGTGATCCGAAAACACACGAGGGAATAGACTTTACTAGATTGACAACTAGAGAATTGATTGATTCATTTCAGTGTCTATATGATAACCAAATTGGGATGGCCTATTTGAAGTTTGCCCGCCATGCTAGCTTCACCAATTTTGGATCTTTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

167

Amino Acids

19.11

Weight (kDa)

6.05

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDI	PF00996	12 - 51	7.1e-11	GDP dissociation inhibitor
GDI	PF00996	68 - 142	7.1e-29	GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44100 AT2G44100 AT3G59920
fragaria_vesca	FvH4_1g00070
malus_domestica	MD02G1000900.v1.1 MD15G1141900.v1.1
prunus_persica	Prupe.7G271300_v2.0.a1 Prupe.7G271300_v2.0.a1
pyrus_communis	pycom15g12810 pycom290g00070
rosa_chinensis	RchiOBHm_Chr2g0084291 RchiOBHm_Chr7g0209621 RchiOBHm_Chr7g0234411
rosa_laevigata	RLG00000015607
rosa_multiflora	Rmu_sc0003129.1_g000011 Rmu_sc0004787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00156180 Rroxscaffold_6G00407240
rosa_rugosa	Rorug01G0452500 Rorug01G0452600 Rorug03G0278400 Rorug03G0278500 Rorug03G0278600 Rorug07G0114700
rosa_samantha	Rh2AG000900 Rh2BG000800 Rh2BG264200 Rh2CG000700 Rh2DG000900 Rh6AG218100 Rh7AG248600 Rh7AG381600 Rh7CG264600 Rh7CG401100 Rh7CG461200 Rh7DG254600
rosa_wichuraiana	Rw2G000070 Rw2G022390 Rw2G045720 Rw5G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	342
AciI	CCGC	3 cut(s)	213, 313, 466
AclWI	GGATC	3 cut(s)	29, 347, 499
AcoI	YGGCCR	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	299, 335, 457
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	2 cut(s)	112, 477
AluI	AGCT	2 cut(s)	112, 477
AlwI	GGATC	3 cut(s)	29, 347, 499
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	3 cut(s)	40, 181, 447
Asp700I	GAANNNNTTC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	306
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	472
AsuNHI	GCTAGC	1 cut(s)	473
BalI	TGGCCA	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	365
BccI	CCATC	3 cut(s)	173, 203, 439
BciT130I	CCWGG	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	39
BfaI	CTAG	4 cut(s)	161, 384, 396, 474
BfoI	RGCGCY	1 cut(s)	307
Bme1390I	CCNGG	2 cut(s)	39, 47
BmiI	GGNNCC	2 cut(s)	28, 249
BmrFI	CCNGG	2 cut(s)	39, 47
BmsI	GCATC	1 cut(s)	101
BmtI	GCTAGC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	144
BshFI	GGCC	3 cut(s)	42, 183, 449
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	287
BsnI	GGCC	3 cut(s)	42, 183, 449
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	34, 352, 491
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	3 cut(s)	213, 313, 466
BspANI	GGCC	3 cut(s)	42, 183, 449
BspLI	GGNNCC	2 cut(s)	28, 249
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	3 cut(s)	29, 347, 499
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	3 cut(s)	34, 352, 491
BssSI	CACGAG	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	22
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	313, 466, 475
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	450
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	3 cut(s)	37, 355, 494
BstMBI	GATC	3 cut(s)	34, 352, 491
BstMWI	GCNNNNNNNGC	3 cut(s)	312, 470, 474
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	37, 45
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BsuRI	GGCC	3 cut(s)	42, 183, 449
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	425
Cac8I	GCNNGC	3 cut(s)	313, 466, 475
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	306
CseI	GACGC	1 cut(s)	189
CviAII	CATG	6 cut(s)	23, 58, 262, 286, 308, 470
CviJI	RGCY	8 cut(s)	29, 42, 112, 142, 158, 183, 449, 477
CviKI_1	RGCY	8 cut(s)	29, 42, 112, 142, 158, 183, 449, 477
DpnI	GATC	3 cut(s)	36, 354, 493
DpnII	GATC	3 cut(s)	34, 352, 491
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	6 cut(s)	26, 61, 265, 289, 311, 473
FatI	CATG	6 cut(s)	22, 57, 261, 285, 307, 469
FauI	CCCGC	2 cut(s)	320, 473
FokI	GGATG	1 cut(s)	457
FriOI	GRGCYC	1 cut(s)	160
FspBI	CTAG	4 cut(s)	161, 384, 396, 474
GlaI	GCGC	1 cut(s)	305
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	307
HaeIII	GGCC	3 cut(s)	42, 183, 449
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	6 cut(s)	26, 61, 265, 289, 311, 473
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	34, 357
Hpy188III	TCNNGA	2 cut(s)	8, 335
Hpy8I	GTNNAC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	3 cut(s)	312, 470, 474
Hsp92II	CATG	6 cut(s)	26, 61, 265, 289, 311, 473
HspAI	GCGC	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	34, 352, 491
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	6 cut(s)	32, 52, 59, 112, 158, 264
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	4 cut(s)	161, 384, 396, 474
MalI	GATC	3 cut(s)	36, 354, 493
MboI	GATC	3 cut(s)	34, 352, 491
MboII	GAAGA	2 cut(s)	130, 313
MflI	RGATCY	1 cut(s)	491
MhlI	GDGCHC	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	3 cut(s)	401, 438, 484
MluNI	TGGCCA	1 cut(s)	183
MnlI	CCTC	6 cut(s)	40, 53, 74, 114, 259, 361
Mox20I	TGGCCA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	2 cut(s)	99, 273
MslI	CAYNNNNRTG	1 cut(s)	418
Msp20I	TGGCCA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	39, 47
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	312, 470, 474
NciI	CCSGG	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	3 cut(s)	34, 352, 491
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	6 cut(s)	26, 61, 265, 289, 311, 473
NlaIV	GGNNCC	2 cut(s)	28, 249
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	410
PsiI	TTATAA	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	28, 249
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	491
PvuII	CAGCTG	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	418
SaqAI	TTAA	2 cut(s)	99, 273
Sau3AI	GATC	3 cut(s)	34, 352, 491
ScrFI	CCNGG	2 cut(s)	39, 47
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	6 cut(s)	51, 114, 125, 240, 249, 479
SfaNI	GCATC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	418
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	3 cut(s)	401, 438, 484
SsiI	CCGC	3 cut(s)	213, 313, 466
SspMI	CTAG	4 cut(s)	161, 384, 396, 474
StyD4I	CCNGG	2 cut(s)	37, 45
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	401, 438, 484
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	2 cut(s)	99, 273
Tru9I	TTAA	2 cut(s)	99, 273
TscAI	CASTG	1 cut(s)	425
TspDTI	ATGAA	3 cut(s)	313, 360, 402
TspGWI	ACGGA	2 cut(s)	7, 93
TspRI	CASTG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	4 cut(s)	161, 384, 396, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.