Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002570

Physical Location & Seq

Genomic Coordinates Reverse (-)

54739011 .. 54739286

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0452500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGTTGTAGGAAGAAGTTCCCAACTCAAAGACTTCTGGTTGATTTGTTTCACTTCAATATTGTGGTTTGTATGGAATGCTAGAAATAAAATGAGACATAAGGGCATGGTGTTTTCAGTTGCTACTATTTGTAGACTTATCTCTTGTCATGTTCAAGCAGCTAGTCATTTGGCAATAGGTACCATGTACAATTCCATCCAAGATCTTCGCATTTTGAAAGCTTTTAGGGCCCAATGCAGATTGTGTTGTGCCCCTAGAGTGATAGAGGTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

91

Amino Acids

10.47

Weight (kDa)

9.99

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44100 AT2G44100 AT3G59920
fragaria_vesca	FvH4_1g00070
malus_domestica	MD02G1000900.v1.1 MD15G1141900.v1.1
prunus_persica	Prupe.7G271300_v2.0.a1 Prupe.7G271300_v2.0.a1
pyrus_communis	pycom15g12810 pycom290g00070
rosa_chinensis	RchiOBHm_Chr2g0084291 RchiOBHm_Chr7g0209621 RchiOBHm_Chr7g0234411
rosa_laevigata	RLG00000015607
rosa_multiflora	Rmu_sc0003129.1_g000011 Rmu_sc0004787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00156180 Rroxscaffold_6G00407240
rosa_rugosa	Rorug01G0452500 Rorug01G0452600 Rorug03G0278400 Rorug03G0278500 Rorug03G0278600 Rorug07G0114700
rosa_samantha	Rh2AG000900 Rh2BG000800 Rh2BG264200 Rh2CG000700 Rh2DG000900 Rh6AG218100 Rh7AG248600 Rh7AG381600 Rh7CG264600 Rh7CG401100 Rh7CG461200 Rh7DG254600
rosa_wichuraiana	Rw2G000070 Rw2G022390 Rw2G045720 Rw5G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	133
AfaI	GTAC	2 cut(s)	181, 188
AgsI	TTSAA	3 cut(s)	57, 155, 217
AluBI	AGCT	2 cut(s)	161, 221
AluI	AGCT	2 cut(s)	161, 221
Alw26I	GTCTC	1 cut(s)	88
AoxI	GGCC	1 cut(s)	228
ApaI	GGGCCC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	158
Asp700I	GAANNNNTTC	1 cut(s)	16
Asp718I	GGTACC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	228, 229
BaeGI	GKGCMC	2 cut(s)	232, 253
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	3 cut(s)	81, 162, 255
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	228, 229
BmiI	GGNNCC	2 cut(s)	181, 230
BseGI	GGATG	1 cut(s)	195
BseSI	GKGCMC	2 cut(s)	232, 253
BseXI	GCAGC	1 cut(s)	170
BshFI	GGCC	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	230
Bsp120I	GGGCCC	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	232, 253
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	202
BspANI	GGCC	1 cut(s)	230
BspLI	GGNNCC	2 cut(s)	181, 230
BspT107I	GGYRCC	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	186
BssMI	GATC	1 cut(s)	202
BstAUI	TGTACA	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstSLI	GKGCMC	2 cut(s)	232, 253
BstV1I	GCAGC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	228, 229
Csp6I	GTAC	2 cut(s)	180, 187
CviAII	CATG	3 cut(s)	106, 149, 184
CviJI	RGCY	3 cut(s)	161, 221, 230
CviKI_1	RGCY	3 cut(s)	161, 221, 230
CviQI	GTAC	2 cut(s)	180, 187
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	232
FaeI	CATG	3 cut(s)	109, 152, 187
FaiI	YATR	5 cut(s)	73, 99, 107, 150, 185
FatI	CATG	3 cut(s)	105, 148, 183
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	3 cut(s)	81, 162, 255
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	109, 152, 187
HindIII	AAGCTT	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	134
HpyCH4V	TGCA	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
Hsp92II	CATG	3 cut(s)	109, 152, 187
KpnI	GGTACC	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	170
MaeI	CTAG	3 cut(s)	81, 162, 255
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	2 cut(s)	24, 197
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	2 cut(s)	232, 253
MluCI	AATT	2 cut(s)	190, 271
MnlI	CCTC	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	16
Mva1269I	GAATGC	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	3 cut(s)	109, 152, 187
NlaIV	GGNNCC	2 cut(s)	181, 230
PctI	GAATGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	181, 230
PspOMI	GGGCCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	228, 229
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	2 cut(s)	181, 188
RsaNI	GTAC	2 cut(s)	180, 187
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	2 cut(s)	228, 229
SduI	GDGCHC	2 cut(s)	232, 253
SetI	ASST	4 cut(s)	163, 181, 223, 270
Sse9I	AATT	2 cut(s)	190, 271
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	3 cut(s)	81, 162, 255
TasI	AATT	2 cut(s)	190, 271
TatI	WGTACW	1 cut(s)	186
TseI	GCWGC	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	16
XspI	CTAG	3 cut(s)	81, 162, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.