Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002570

Physical Location & Seq

Genomic Coordinates Forward (+)

29889407 .. 29893370

Gene Structure 3964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTCAAGAACACTGATATTTTGCTCTATTGAAGCTGTTCTACTTTGTGAGTTACTATCTTTGTATGCATTAAAATATTTGAAAGAACAAAGGCTTCCTCCTCAGACATTCATACCTCTCCAATCTGTTCGTGTAAAGCAAGCAATGGAGAGATTGCATAACTTGGGTGTAGAGATTGAAGTTCTACACATGGATAGGAATGACTATTACGGAGGAGAGTGTGCATCACTTAATCTTATTCAGCTCTGGAAGAGGTTCAGGGGAGATGATAAGCCCCCAGCCCAGTTGGGCTCTAGTAGGGATTATAATGTGGACATGGTCCCTAAGTTTATGATGGCCAATGGAACTCTAGTGCGTGTCCTCATTCATACAGATGTTGCCAAGTATTTGTCCTTCAAAGCTGTGGATGGTAGTTTTGTCTATAATAAAGGAAAGCTTTATGTGGAATCTATTGCACGTTTTCAAGGAGGATCTCCATACATTTATCCTTTGTATGGACTAGGAGAGCTTCCTCAGGCATTTGCACGACTTAGTGCGGTTTATGGTGGTACTTATATGCTTAATAAACCTGAACGCAAGGTGGAGTTCAATGAGGAAGGGAAAGTTATTGGTGTCACATCTGAAGGTGAAACTGCCAAGTGCACTAAAGTTGTCTGTGACCCTTCTTACTTACCCAACAAGGTCAGAAAGGTTGGTAAGGTTGCAAGGGCTATAGGCTATAGCCATAAACCACCCAATGAACCACAAATGATTCTCATTCAGTTCCAGGTTATCCTGCCACAAATGATTCTCATTCAGTCACAGATCAGGTTGAGTAGAACTGGATTTGAGCATCTGGACATATCATGGCTCTTTGGGAAGGTTTTTCTCAGTATATGTGTCTCCATACCCATAAAATTTCGTGAATTGGAAGTTCAGCTGGCATCTAAAGCATATAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

314

Amino Acids

35.6

Weight (kDa)

9.21

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDI	PF00996	60 - 147	6.6e-41	GDP dissociation inhibitor
GDI	PF00996	145 - 264	1.4e-47	GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44100 AT2G44100 AT3G59920
fragaria_vesca	FvH4_1g00070
malus_domestica	MD02G1000900.v1.1 MD15G1141900.v1.1
prunus_persica	Prupe.7G271300_v2.0.a1 Prupe.7G271300_v2.0.a1
pyrus_communis	pycom15g12810 pycom290g00070
rosa_chinensis	RchiOBHm_Chr2g0084291 RchiOBHm_Chr7g0209621 RchiOBHm_Chr7g0234411
rosa_laevigata	RLG00000015607
rosa_multiflora	Rmu_sc0003129.1_g000011 Rmu_sc0004787.1_g000004
rosa_roxburghii	Rroxscaffold_2G00156180 Rroxscaffold_6G00407240
rosa_rugosa	Rorug01G0452500 Rorug01G0452600 Rorug03G0278400 Rorug03G0278500 Rorug03G0278600 Rorug07G0114700
rosa_samantha	Rh2AG000900 Rh2BG000800 Rh2BG264200 Rh2CG000700 Rh2DG000900 Rh6AG218100 Rh7AG248600 Rh7AG381600 Rh7CG264600 Rh7CG401100 Rh7CG461200 Rh7DG254600
rosa_wichuraiana	Rw2G000070 Rw2G022390 Rw2G045720 Rw5G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	1 cut(s)	478
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	896
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	1 cut(s)	550
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgsI	TTSAA	6 cut(s)	32, 82, 179, 397, 464, 589
AjnI	CCWGG	1 cut(s)	765
AluBI	AGCT	6 cut(s)	35, 244, 401, 436, 508, 919
AluI	AGCT	6 cut(s)	35, 244, 401, 436, 508, 919
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	1 cut(s)	886
Alw44I	GTGCAC	1 cut(s)	640
AlwI	GGATC	1 cut(s)	478
AoxI	GGCC	1 cut(s)	336
ApaLI	GTGCAC	1 cut(s)	640
ApoI	RAATTY	1 cut(s)	896
Asp700I	GAANNNNTTC	2 cut(s)	36, 254
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	319
AxyI	CCTNAGG	1 cut(s)	513
BaeGI	GKGCMC	1 cut(s)	644
BalI	TGGCCA	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	293
BarI	GAAGNNNNNNTAC	4 cut(s)	24, 56, 377, 409
Bbv12I	GWGCWC	1 cut(s)	644
BccI	CCATC	2 cut(s)	328, 401
BciT130I	CCWGG	1 cut(s)	767
BcoDI	GTCTC	1 cut(s)	886
BfaI	CTAG	3 cut(s)	294, 350, 500
BfmI	CTRYAG	2 cut(s)	711, 718
Bme1390I	CCNGG	1 cut(s)	767
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	767
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	3 cut(s)	233, 841, 932
BmuI	ACTGGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse1I	ACTGG	2 cut(s)	283, 826
Bse21I	CCTNAGG	1 cut(s)	513
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	767
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	116, 527, 883
BseNI	ACTGG	2 cut(s)	283, 826
BseRI	GAGGAG	2 cut(s)	90, 228
BseSI	GKGCMC	1 cut(s)	644
BseYI	CCCAGC	1 cut(s)	277
BshFI	GGCC	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	1 cut(s)	886
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	293, 644
Bsp143I	GATC	2 cut(s)	470, 804
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	3 cut(s)	115, 526, 882
BspLI	GGNNCC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	283, 826
BssMI	GATC	2 cut(s)	470, 804
Bst2UI	CCWGG	1 cut(s)	767
Bst6I	CTCTTC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	141, 921
BstDEI	CTNAG	5 cut(s)	102, 324, 513, 530, 869
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	473, 807
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	2 cut(s)	470, 804
BstMWI	GCNNNNNNNGC	1 cut(s)	929
BstNI	CCWGG	1 cut(s)	767
BstSCI	CCNGG	1 cut(s)	765
BstSFI	CTRYAG	2 cut(s)	711, 718
BstSLI	GKGCMC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
Bsu36I	CCTNAGG	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	141, 921
Cfr13I	GGNCC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	549
CviAII	CATG	3 cut(s)	190, 316, 846
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	5 cut(s)	102, 324, 513, 530, 869
DpnI	GATC	2 cut(s)	472, 806
DpnII	GATC	2 cut(s)	470, 804
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	642
Eco81I	CCTNAGG	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	765
EcoT22I	ATGCAT	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	293
FaeI	CATG	3 cut(s)	193, 319, 849
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	3 cut(s)	189, 315, 845
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	293
FspBI	CTAG	3 cut(s)	294, 350, 500
GsaI	CCCAGC	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	193, 319, 849
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	3 cut(s)	446, 751, 787
HphI	GGTGA	1 cut(s)	638
Hpy166II	GTNNAC	2 cut(s)	313, 642
Hpy188I	TCNGA	3 cut(s)	105, 622, 686
Hpy188III	TCNNGA	4 cut(s)	6, 247, 836, 902
Hpy8I	GTNNAC	2 cut(s)	313, 642
HpyAV	CCTTC	5 cut(s)	403, 590, 617, 672, 853
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	7 cut(s)	68, 157, 224, 455, 524, 642, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	929
HpyF3I	CTNAG	5 cut(s)	102, 324, 513, 530, 869
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	3 cut(s)	193, 319, 849
Kzo9I	GATC	2 cut(s)	470, 804
LweI	GCATC	3 cut(s)	233, 841, 932
MaeI	CTAG	3 cut(s)	294, 350, 500
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	4 cut(s)	51, 613, 656, 798
MalI	GATC	2 cut(s)	472, 806
MboI	GATC	2 cut(s)	470, 804
MboII	GAAGA	1 cut(s)	262
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	2 cut(s)	293, 644
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	3 cut(s)	896, 905, 937
MluNI	TGGCCA	1 cut(s)	338
MnlI	CCTC	9 cut(s)	108, 111, 126, 206, 246, 371, 461, 522, 586
Mox20I	TGGCCA	1 cut(s)	338
Mph1103I	ATGCAT	1 cut(s)	70
MroXI	GAANNNNTTC	2 cut(s)	36, 254
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	3 cut(s)	71, 231, 561
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	919
MspR9I	CCNGG	1 cut(s)	767
MvaI	CCWGG	1 cut(s)	767
MwoI	GCNNNNNNNGC	1 cut(s)	929
NdeII	GATC	2 cut(s)	470, 804
NlaIII	CATG	3 cut(s)	193, 319, 849
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	3 cut(s)	613, 656, 798
NsiI	ATGCAT	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	36, 254
PfeI	GAWTC	3 cut(s)	446, 751, 787
PflFI	GACNNNGTC	1 cut(s)	317
PsiI	TTATAA	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	765
PspFI	CCCAGC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	765
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	470
PsyI	GACNNNGTC	1 cut(s)	317
PvuII	CAGCTG	1 cut(s)	919
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	71, 231, 561
Sau3AI	GATC	2 cut(s)	470, 804
Sau96I	GGNCC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	767
SduI	GDGCHC	2 cut(s)	293, 644
SfaNI	GCATC	3 cut(s)	233, 841, 932
SfcI	CTRYAG	2 cut(s)	711, 718
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	3 cut(s)	896, 905, 937
SsiI	CCGC	1 cut(s)	536
SspI	AATATT	1 cut(s)	77
SspMI	CTAG	3 cut(s)	294, 350, 500
StyD4I	CCNGG	1 cut(s)	765
TaiI	ACGT	1 cut(s)	460
TasI	AATT	3 cut(s)	896, 905, 937
TfiI	GAWTC	3 cut(s)	446, 751, 787
Tru1I	TTAA	3 cut(s)	71, 231, 561
Tru9I	TTAA	3 cut(s)	71, 231, 561
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	3 cut(s)	613, 656, 798
Tsp45I	GTSAC	3 cut(s)	613, 656, 798
TspDTI	ATGAA	4 cut(s)	100, 356, 753, 930
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	18
Tth111I	GACNNNGTC	1 cut(s)	317
VneI	GTGCAC	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	1 cut(s)	896
XmnI	GAANNNNTTC	2 cut(s)	36, 254
XspI	CTAG	3 cut(s)	294, 350, 500
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.