Rh7DG254600

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002570
Physical Location & Seq
Forward (+)
26562417 .. 26566516
4100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG254600.1

Sequence Viewer

Length: 327 bp
ATGATGGCCAATGGAACTCTAATGCATGTCCTCATTCATACAGCTGTTACCAAGTATTTGTCCTTCAAAGCTGTCGATGGCGGTTTTGTCTATAATAAAGGAAAGGTTCACAAGGTTCCAGCAACTGACATGGAGGCACTTAAATCTCCACTCATGGGTCTATTTGAAAAGCGCCGTGCCCGCAAGTTCTTCATATATGTTCAAGATTATAATGAAAGTGATCCGAAAACACACGAGGGAATAGACTTTACGAGAGTGACAACTAGAGAATTGATTATGTGCTTGGATGTTACCCTTTCTGAAAATGAATTCTGTAATGCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

108

Amino Acids

12.32

Weight (kDa)

7.8

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 1 - 104 4.2e-42 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AciI CCGC 2 cut(s) 81, 181
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 3 cut(s) 67, 167, 203
AluBI AGCT 2 cut(s) 44, 71
AluI AGCT 2 cut(s) 44, 71
AlwI GGATC 1 cut(s) 215
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 308
AspLEI GCGC 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 181
BalI TGGCCA 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 47, 79
BauI CACGAG 1 cut(s) 233
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 159
BfaI CTAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 155
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 181
BshFI GGCC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 155
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 2 cut(s) 81, 181
BspANI GGCC 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 215
BssMI GATC 1 cut(s) 220
BssSI CACGAG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 181
BstF5I GGATG 1 cut(s) 292
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 29
BstSLI GKGCMC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 181
CaiI CAGNNNCTG 1 cut(s) 125
CfoI GCGC 1 cut(s) 174
CviAII CATG 3 cut(s) 26, 130, 154
CviJI RGCY 3 cut(s) 8, 44, 71
CviKI_1 RGCY 3 cut(s) 8, 44, 71
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 308
EcoT22I ATGCAT 1 cut(s) 27
FaeI CATG 3 cut(s) 29, 133, 157
FatI CATG 3 cut(s) 25, 129, 153
FauI CCCGC 1 cut(s) 188
FokI GGATG 1 cut(s) 299
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 173
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 1 cut(s) 8
HhaI GCGC 1 cut(s) 174
Hin1II CATG 3 cut(s) 29, 133, 157
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 225, 301
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 25, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
Hsp92II CATG 3 cut(s) 29, 133, 157
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 1 cut(s) 132
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 3 cut(s) 46, 256, 289
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 181
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 2 cut(s) 269, 308
MluNI TGGCCA 1 cut(s) 8
MnlI CCTC 3 cut(s) 41, 127, 229
Mox20I TGGCCA 1 cut(s) 8
Mph1103I ATGCAT 1 cut(s) 27
MscI TGGCCA 1 cut(s) 8
MseI TTAA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 1 cut(s) 220
NlaIII CATG 3 cut(s) 29, 133, 157
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 27
NspI RCATGY 1 cut(s) 29
PsiI TTATAA 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 125
PvuII CAGCTG 1 cut(s) 44
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 1 cut(s) 220
SduI GDGCHC 1 cut(s) 181
SetI ASST 4 cut(s) 46, 73, 108, 117
Sse9I AATT 2 cut(s) 269, 308
SsiI CCGC 2 cut(s) 81, 181
SspMI CTAG 1 cut(s) 264
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 269, 308
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 4 cut(s) 26, 181, 228, 321
XapI RAATTY 1 cut(s) 308
XceI RCATGY 1 cut(s) 29
XspI CTAG 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.