Rorug07G0114700

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002570
Physical Location & Seq
Forward (+)
8945637 .. 8946829
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0114700.1

Sequence Viewer

Length: 597 bp
ATGCAGCAAATTAAGATCTGGAATCCAAGGAATGGTTACTGCCTTGGAACTGTTGACACAGGACTCGGCATGTGTGCTTTTATCCTTCCTTGTTGCAATAATAAGTTTGCACTTATTGGAACCAGGGGTGGAACAATGGAAATTATTGACGTTGGGAGTGCAACTGTCACTCAAGTAGTGGAATTAAGCTCATGGTACGTGGCTTTGTTGAGTCTATTGCAAGAATTCCCAATGAAAATGGTTTTGTCACAGGAAGCTCAGATGGTTATGTTAAGTTCTGGGAATATGAAGTCAAACAACCCTGATGCCAAATATCTTTTGGTGGCGTTGGACACCACACTAAAGGTATTCTATATGGATTCACTCAAACTTTTCCTAACCTTATATGGTCACAAGCTGCCAGTGCTATGTCTGGATGTTTCATCCGACGGAGATCTGATAGTGACTGGATCTGAAGACAAAAATGTGAAGATTTGGGGGCTAGATTTTTGTGACAGCCACAAATCAATGTTTGATCATAAGAGCAGTGTTCAGCGAGTACAATTTGTGCCAAACACCCATTACTTCGTCAGTGTTGGGGAAGATATAAGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

198

Amino Acids

21.99

Weight (kDa)

5.75

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_2nd PF25172 2 - 71 6e-09 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 3 - 195 3.2e-13 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 35 - 189 7.7e-08 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 83 - 161 6.9e-06 TEP-1 second beta-propeller
Beta-prop_WDR3_2nd PF25172 86 - 195 1.1e-44 WDR3 second beta-propeller domain
Beta-prop_IFT122_1st PF23381 99 - 192 1.4e-07 IFT122 first beta-propeller
Beta-prop_WDR5 PF25175 101 - 195 7e-14 WDR5 beta-propeller domain
WD40_Gbeta PF25391 104 - 195 1.1e-06 G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st PF25173 106 - 195 6e-13 WDR3 first beta-propeller domain
EIF3I PF24805 108 - 194 2.8e-08 EIF3I
WD40_Prp19 PF24814 109 - 195 1.4e-11 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 109 - 195 1.2e-09 WDHD1 first WD40 domain
WD40 PF00400 125 - 159 4e-10 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 125 - 195 6.4e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 131 - 196 4.2e-06 WDR90/POC16, second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 32
AclWI GGATC 1 cut(s) 457
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 2 cut(s) 197, 540
AfiI CCNNNNNNNGG 1 cut(s) 32
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 3 cut(s) 189, 257, 397
AluI AGCT 3 cut(s) 189, 257, 397
AlwI GGATC 1 cut(s) 457
ApeKI GCWGC 2 cut(s) 4, 397
ApoI RAATTY 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 16, 384
BccI CCATC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 124
BclI TGATCA 1 cut(s) 514
BfaI CTAG 1 cut(s) 482
BglII AGATCT 2 cut(s) 15, 433
BisI GCNGC 2 cut(s) 5, 398
BlsI GCNGC 2 cut(s) 6, 399
Bme1390I CCNGG 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 199
BsaJI CCNNGG 3 cut(s) 26, 43, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 401, 451
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 3 cut(s) 26, 43, 123
BseGI GGATG 2 cut(s) 421, 422
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 2 cut(s) 401, 451
BseXI GCAGC 2 cut(s) 16, 384
BslI CCNNNNNNNGG 1 cut(s) 32
Bsp143I GATC 4 cut(s) 15, 433, 449, 514
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 1 cut(s) 457
BsrI ACTGG 2 cut(s) 401, 451
BssECI CCNNGG 3 cut(s) 26, 43, 123
BssMI GATC 4 cut(s) 15, 433, 449, 514
BssT1I CCWWGG 2 cut(s) 26, 43
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 52, 166
BstBAI YACGTR 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 421, 422
BstKTI GATC 4 cut(s) 18, 436, 452, 517
BstMBI GATC 4 cut(s) 15, 433, 449, 514
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstNI CCWGG 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 16, 384
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 3 cut(s) 15, 433, 449
BstYI RGATCY 3 cut(s) 15, 433, 449
BtsCI GGATG 2 cut(s) 421, 422
BtsI GCAGTG 1 cut(s) 532
BtsIMutI CAGTG 3 cut(s) 408, 532, 577
Csp6I GTAC 2 cut(s) 196, 539
CviAII CATG 2 cut(s) 70, 192
CviJI RGCY 6 cut(s) 189, 203, 257, 397, 481, 498
CviKI_1 RGCY 6 cut(s) 189, 203, 257, 397, 481, 498
CviQI GTAC 2 cut(s) 196, 539
DdeI CTNAG 1 cut(s) 258
DpnI GATC 4 cut(s) 17, 435, 451, 516
DpnII GATC 4 cut(s) 15, 433, 449, 514
Eco130I CCWWGG 2 cut(s) 26, 43
Eco57I CTGAAG 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 2 cut(s) 26, 43
ErhI CCWWGG 2 cut(s) 26, 43
FaeI CATG 2 cut(s) 73, 195
FatI CATG 2 cut(s) 69, 191
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 5, 398
FokI GGATG 2 cut(s) 409, 428
Fsp4HI GCNGC 2 cut(s) 5, 398
FspBI CTAG 1 cut(s) 482
GluI GCNGC 2 cut(s) 5, 398
Hin1II CATG 2 cut(s) 73, 195
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 4 cut(s) 22, 63, 211, 359
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 4 cut(s) 261, 427, 438, 454
Hpy188III TCNNGA 2 cut(s) 19, 413
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 431
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 52, 166
HpyCH4IV ACGT 2 cut(s) 150, 198
HpyCH4V TGCA 5 cut(s) 4, 96, 110, 161, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 2 cut(s) 150, 198
Hsp92II CATG 2 cut(s) 73, 195
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 4 cut(s) 15, 433, 449, 514
Lsp1109I GCAGC 2 cut(s) 16, 384
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 482
MaeII ACGT 2 cut(s) 150, 198
MaeIII GTNAC 6 cut(s) 35, 166, 246, 389, 442, 491
MalI GATC 4 cut(s) 17, 435, 451, 516
MboI GATC 4 cut(s) 15, 433, 449, 514
MboII GAAGA 3 cut(s) 467, 481, 593
MflI RGATCY 3 cut(s) 15, 433, 449
MluCI AATT 5 cut(s) 9, 141, 182, 224, 542
MlyI GAGTC 2 cut(s) 57, 220
MmeI TCCRAC 2 cut(s) 309, 450
MseI TTAA 3 cut(s) 12, 185, 272
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 403
NdeII GATC 4 cut(s) 15, 433, 449, 514
NlaIII CATG 2 cut(s) 73, 195
NlaIV GGNNCC 1 cut(s) 121
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 5 cut(s) 166, 246, 389, 442, 491
NspI RCATGY 1 cut(s) 73
PfeI GAWTC 2 cut(s) 22, 359
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 2 cut(s) 6, 399
PleI GAGTC 2 cut(s) 57, 219
PpsI GAGTC 2 cut(s) 57, 219
Ppu21I YACGTR 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 121
PsuI RGATCY 3 cut(s) 15, 433, 449
RsaI GTAC 2 cut(s) 197, 540
RsaNI GTAC 2 cut(s) 196, 539
SaqAI TTAA 3 cut(s) 12, 185, 272
SatI GCNGC 2 cut(s) 5, 398
Sau3AI GATC 4 cut(s) 15, 433, 449, 514
SchI GAGTC 2 cut(s) 57, 220
ScrFI CCNGG 1 cut(s) 124
SetI ASST 7 cut(s) 153, 191, 201, 259, 348, 383, 399
SfaNI GCATC 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
Sse9I AATT 5 cut(s) 9, 141, 182, 224, 542
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 2 cut(s) 26, 43
TaaI ACNGT 2 cut(s) 52, 166
TaiI ACGT 2 cut(s) 153, 201
TasI AATT 5 cut(s) 9, 141, 182, 224, 542
TatI WGTACW 1 cut(s) 538
TfiI GAWTC 2 cut(s) 22, 359
Tru1I TTAA 3 cut(s) 12, 185, 272
Tru9I TTAA 3 cut(s) 12, 185, 272
TscAI CASTG 3 cut(s) 408, 532, 577
TseFI GTSAC 5 cut(s) 166, 246, 389, 442, 491
TseI GCWGC 2 cut(s) 4, 397
Tsp45I GTSAC 5 cut(s) 166, 246, 389, 442, 491
TspDTI ATGAA 3 cut(s) 248, 302, 411
TspGWI ACGGA 1 cut(s) 444
TspRI CASTG 3 cut(s) 408, 532, 577
Van91I CCANNNNNTGG 1 cut(s) 32
XapI RAATTY 1 cut(s) 224
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XspI CTAG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.