RchiOBHm_Chr7g0234411

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002570
Physical Location & Seq
Reverse (-)
59079140 .. 59079939
800 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21007

Sequence Viewer

Length: 453 bp
ATGTTGATAAAGCACTTATATGATAGCTATTTGCATCTTGTGATCCAGGTTCTACACATGGATAGGAATGACTATTACGGAGGAGAGTGTGCATCACTTAATCTTATTCAGCTCTGGAAGAGGTTCAGGGGAGATGATAAGCCCCCAGCCCAGTTGGGCTCTAGTAGGGATTATAATGTGGACATGGTCCCTAAGTTTATGATGGCCAATGGAACGCTAGTGCGTGTCCTTATTCATACAGATGTTACCAAGTATTTGTCCTTCAAAGCTGTGGATGGTAGTTTTGTCTATAATAAAGGAAAGGTTCACAAGGTTCCAGCAAATGATATGGAGGCACTTAAATCTATGGAGGCACTTAAATCTCCACTCATGGGTCTATTTGAAAAGCGCCGTGCCCGAAAGTTCTTCATAGAGATGATCGCTACCTGGATGAACCTGCACTGGATACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

150

Amino Acids

17.48

Weight (kDa)

9.43

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 16 - 137 2.2e-58 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 444
AclWI GGATC 1 cut(s) 37
AcoI YGGCCR 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 2 cut(s) 265, 383
AjnI CCWGG 2 cut(s) 45, 425
AluBI AGCT 3 cut(s) 27, 112, 269
AluI AGCT 3 cut(s) 27, 112, 269
AlwI GGATC 1 cut(s) 37
AoxI GGCC 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 122
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 187
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 397
BalI TGGCCA 1 cut(s) 206
BanII GRGCYC 1 cut(s) 161
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BccI CCATC 2 cut(s) 196, 269
BceAI ACGGC 1 cut(s) 375
BciT130I CCWGG 2 cut(s) 47, 427
BciVI GTATCC 1 cut(s) 438
BfaI CTAG 2 cut(s) 162, 218
BfoI RGCGCY 1 cut(s) 391
BfuAI ACCTGC 1 cut(s) 444
BfuI GTATCC 1 cut(s) 438
Bme1390I CCNGG 2 cut(s) 47, 427
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 189, 315
BmrFI CCNGG 2 cut(s) 47, 427
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 43, 101
BmuI ACTGGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 2 cut(s) 151, 446
BseBI CCWGG 2 cut(s) 47, 427
BseGI GGATG 2 cut(s) 280, 435
BseLI CCNNNNNNNGG 1 cut(s) 371
BseNI ACTGG 2 cut(s) 151, 446
BseRI GAGGAG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 397
BseYI CCCAGC 1 cut(s) 145
BsgI GTGCAG 1 cut(s) 422
BshFI GGCC 1 cut(s) 206
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 161, 397
Bsp143I GATC 2 cut(s) 42, 417
BspANI GGCC 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 189, 315
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 37
BsrI ACTGG 2 cut(s) 151, 446
BssMI GATC 2 cut(s) 42, 417
Bst2UI CCWGG 2 cut(s) 47, 427
Bst4CI ACNGT 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 280, 435
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 2 cut(s) 45, 420
BstMBI GATC 2 cut(s) 42, 417
BstNI CCWGG 2 cut(s) 47, 427
BstSCI CCNGG 2 cut(s) 45, 425
BstSLI GKGCMC 1 cut(s) 397
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 1 cut(s) 206
BtsCI GGATG 2 cut(s) 280, 435
BtsIMutI CAGTG 1 cut(s) 439
BveI ACCTGC 1 cut(s) 444
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 187
CviAII CATG 3 cut(s) 58, 184, 370
CviJI RGCY 7 cut(s) 27, 112, 142, 149, 159, 206, 269
CviKI_1 RGCY 7 cut(s) 27, 112, 142, 149, 159, 206, 269
DdeI CTNAG 1 cut(s) 192
DpnI GATC 2 cut(s) 44, 419
DpnII GATC 2 cut(s) 42, 417
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 45, 425
EcoT38I GRGCYC 1 cut(s) 161
FaeI CATG 3 cut(s) 61, 187, 373
FaqI GGGAC 1 cut(s) 173
FatI CATG 3 cut(s) 57, 183, 369
FokI GGATG 2 cut(s) 287, 442
FriOI GRGCYC 1 cut(s) 161
FspBI CTAG 2 cut(s) 162, 218
GlaI GCGC 1 cut(s) 389
GsaI CCCAGC 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 1 cut(s) 206
HhaI GCGC 1 cut(s) 390
Hin1II CATG 3 cut(s) 61, 187, 373
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
Hpy166II GTNNAC 2 cut(s) 181, 307
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 2 cut(s) 181, 307
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4V TGCA 3 cut(s) 34, 92, 439
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 3 cut(s) 61, 187, 373
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 2 cut(s) 42, 417
LweI GCATC 2 cut(s) 43, 101
MaeI CTAG 2 cut(s) 162, 218
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 44, 419
MboI GATC 2 cut(s) 42, 417
MboII GAAGA 2 cut(s) 130, 397
MhlI GDGCHC 2 cut(s) 161, 397
MlsI TGGCCA 1 cut(s) 206
MluNI TGGCCA 1 cut(s) 206
MnlI CCTC 4 cut(s) 74, 114, 325, 343
Mox20I TGGCCA 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 122
MscI TGGCCA 1 cut(s) 206
MseI TTAA 3 cut(s) 99, 339, 357
MslI CAYNNNNRTG 3 cut(s) 18, 240, 413
Msp20I TGGCCA 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 47, 427
MvaI CCWGG 2 cut(s) 47, 427
NdeII GATC 2 cut(s) 42, 417
NlaIII CATG 3 cut(s) 61, 187, 373
NlaIV GGNNCC 2 cut(s) 189, 315
PdmI GAANNNNTTC 1 cut(s) 122
PflFI GACNNNGTC 1 cut(s) 185
PsiI TTATAA 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 45, 425
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 2 cut(s) 45, 425
PspN4I GGNNCC 2 cut(s) 189, 315
PspPI GGNCC 1 cut(s) 187
PsyI GACNNNGTC 1 cut(s) 185
RseI CAYNNNNRTG 3 cut(s) 18, 240, 413
SaqAI TTAA 3 cut(s) 99, 339, 357
Sau3AI GATC 2 cut(s) 42, 417
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 2 cut(s) 47, 427
SduI GDGCHC 2 cut(s) 161, 397
SetI ASST 9 cut(s) 29, 51, 114, 125, 271, 306, 315, 428, 438
SfaNI GCATC 2 cut(s) 43, 101
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 3 cut(s) 18, 240, 413
SspMI CTAG 2 cut(s) 162, 218
StyD4I CCNGG 2 cut(s) 45, 425
TaaI ACNGT 1 cut(s) 450
Tru1I TTAA 3 cut(s) 99, 339, 357
Tru9I TTAA 3 cut(s) 99, 339, 357
TscAI CASTG 1 cut(s) 446
TspDTI ATGAA 3 cut(s) 224, 397, 446
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 446
Tth111I GACNNNGTC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 2 cut(s) 162, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.