Rorug03G0278500

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002570
Physical Location & Seq
Reverse (-)
27612223 .. 27615783
3561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0278500.1

Sequence Viewer

Length: 1443 bp
ATGGCACAGTGGGGTGTTCGTCGGAGAGTTGTGTTCCTTAAAGAAAATAATCCTCAAGTTGCATCCAGCATCACTAAGGAAGAAGAGGTAGAAGATTCCAAAGATGAAGTTTTAAGAGCTGTGGTAGAGGATTCAAAAGATGGAGTTTTAAGAGCTGTGAAAACTGAACCTCTAGAGATGCCAGAACCCAAAAGGAGGAAGTGCCTTGACCGCAGATCTAAAGATGTGCAGGCAGCATTGCGTGCTAAGAAAAGACAGCATGGGTTTAGGCCAATGGAGAGAAATGAGATCATAGGAGGAAGATGGAATGTTGAGAGGTATAAGAAAGCAGAGCAAAGTCTGTTGGATGTTTTGGAGGCTAAAGAGGCAACTTTTGCCAACCCAGTTAGCAGGACAGATCTGAGATTGACAGCTCGAGGAAAAATTGGTGACACTGGGCTGATTGACCACCTACTGAAGCACATTGATGGCACAGTTACACCATGTGGGAGCAAGCGGTTTCGGCGGTGGTTCAACCACAATGGAATAATGGAATATTGGTTGGAGAGTGCGGAACTGGCTGACATTCGGAAAGAGGCTGGGCATCATCCTTATTGGTTTCCACCAGGTTGTGGTGCCTCCGAGCATTATGATTCTCCTGGAGAACTGAGGCTACTCAAGGCAGAAGTGGATAAAATGAAAAGTGATATGCAGGAGCTGCTGGTATTCAAGAAGCAAGAGAAAGATCAAACCAATATGCTGGAGGATTTGGTGAAATGGAAAGCTCAAACTGAGGAAAGGTTGAAACTTGCTTTAGGTTCTTGGAAGGGTATGCAGGACAAGTTGGGTGAGTTCATGACATGGAAAGCTTCTGTTGAGCAACAGCTGGTGGAATTTACAAATGTCATGAGTAATATGCAAGTAGAAAAGCAATACACTGCTACCAACCTTTTAGCTTCTGAGCAATGGGAAGATTGGTTGGAGAGCGGCAATGTGGATAATTTCCAGGGAAATGAACTTGTACCTTGGTTTGAGAATACCACTCCAGTGAACAATGAAGAGGAAGTTATAATCCAAGATCCCCAGTCAGCCCCACCGGATGGATCAAAGACTGGTGATAGCTCATCACAGGACCCTATTTTCACAGCGGAGGAAATGGTTGAATTGGAGAGAACGAGAGATGTGCCTAGGCTGGAATGGGAGAAGCAGACTGAACATCAAGCTAATGTGACTCCTAATTCTTCTGCTACTGCAAGTTCGAAGTCAGATGTTGATAACCTGCATTTGTTTCAGGAAATGTTTCAGGAGTTGTTTAGCTGGAAATCTCAAATGGAGCAGAAAATGACTGAGTTATCAAATTCTGTGAGTGCCATCAAGCAAACATCAAACGTATCTACTCCAGCCCTTCAGCTGCCAGAAGATGGGAATCTGATTATGGACTATTATCCATGTTACAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

480

Amino Acids

55.22

Weight (kDa)

5.22

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 101 - 183 5.5e-24 Winged helix-turn-helix domain in plant reproductive proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1049
Acc36I ACCTGC 1 cut(s) 1266
AccB1I GGYRCC 1 cut(s) 614
AccB7I CCANNNNNTGG 3 cut(s) 611, 1079, 1400
AccBSI CCGCTC 1 cut(s) 966
AciI CCGC 6 cut(s) 211, 496, 505, 551, 966, 1127
AclWI GGATC 2 cut(s) 1052, 1090
AcsI RAATTY 2 cut(s) 872, 1336
AcuI CTGAAG 2 cut(s) 476, 1370
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 1 cut(s) 1002
AfiI CCNNNNNNNGG 4 cut(s) 195, 611, 1079, 1400
AgsI TTSAA 5 cut(s) 135, 514, 709, 784, 1142
AjnI CCWGG 3 cut(s) 604, 637, 984
AleI CACNNNNGTG 1 cut(s) 1025
AlwI GGATC 2 cut(s) 1052, 1090
AlwNI CAGNNNCTG 1 cut(s) 697
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 3 cut(s) 233, 697, 1390
ApoI RAATTY 2 cut(s) 872, 1336
Asp700I GAANNNNTTC 1 cut(s) 1278
AspA2I CCTAGG 1 cut(s) 1166
AspS9I GGNCC 1 cut(s) 1111
AsuHPI GGTGA 4 cut(s) 440, 763, 839, 1106
AsuII TTCGAA 1 cut(s) 1238
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 1 cut(s) 1111
AvrII CCTAGG 1 cut(s) 1166
BanI GGYRCC 1 cut(s) 614
BbvI GCAGC 3 cut(s) 245, 684, 1377
BccI CCATC 6 cut(s) 134, 297, 461, 1073, 1358, 1394
BcgI CGANNNNNNTGC 2 cut(s) 1144, 1178
BciT130I CCWGG 3 cut(s) 606, 639, 986
BfaI CTAG 3 cut(s) 173, 1167, 1441
BfuAI ACCTGC 1 cut(s) 1266
BglII AGATCT 2 cut(s) 215, 397
BisI GCNGC 4 cut(s) 234, 698, 967, 1391
BlnI CCTAGG 1 cut(s) 1166
BlsI GCNGC 4 cut(s) 235, 699, 968, 1392
Bme1390I CCNGG 3 cut(s) 606, 639, 986
Bme18I GGWCC 1 cut(s) 1111
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 1111
BmiI GGNNCC 2 cut(s) 616, 1113
BmrFI CCNGG 3 cut(s) 606, 639, 986
BmrI ACTGGG 3 cut(s) 377, 444, 1057
BmsI GCATC 4 cut(s) 71, 78, 168, 592
BmuI ACTGGG 3 cut(s) 377, 444, 1057
BpmI CTGGAG 4 cut(s) 660, 761, 1008, 1362
Bpu14I TTCGAA 1 cut(s) 1238
BpuEI CTTGAG 2 cut(s) 39, 641
BsaBI GATNNNNATC 1 cut(s) 1404
BsaJI CCNNGG 3 cut(s) 985, 1004, 1166
BsaWI WCCGGW 1 cut(s) 1075
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 611, 1079, 1400
Bse1I ACTGG 6 cut(s) 383, 439, 561, 1025, 1063, 1096
Bse3DI GCAATG 3 cut(s) 236, 950, 976
Bse8I GATNNNNATC 1 cut(s) 1404
BseBI CCWGG 3 cut(s) 606, 639, 986
BseDI CCNNGG 3 cut(s) 985, 1004, 1166
BseGI GGATG 4 cut(s) 62, 352, 586, 1084
BseJI GATNNNNATC 1 cut(s) 1404
BseLI CCNNNNNNNGG 4 cut(s) 195, 611, 1079, 1400
BseMI GCAATG 3 cut(s) 236, 950, 976
BseMII CTCAG 5 cut(s) 392, 638, 762, 930, 1317
BseNI ACTGG 6 cut(s) 383, 439, 561, 1025, 1063, 1096
BseXI GCAGC 3 cut(s) 245, 684, 1377
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 248
BshFI GGCC 1 cut(s) 271
BshNI GGYRCC 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 414
BsiSI CCGG 1 cut(s) 1076
BslI CCNNNNNNNGG 4 cut(s) 195, 611, 1079, 1400
BsnI GGCC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 414
Bsp119I TTCGAA 1 cut(s) 1238
Bsp143I GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
BspACI CCGC 6 cut(s) 211, 496, 505, 551, 966, 1127
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 5 cut(s) 393, 639, 763, 931, 1318
BspHI TCATGA 2 cut(s) 834, 885
BspLI GGNNCC 2 cut(s) 616, 1113
BspMI ACCTGC 1 cut(s) 1266
BspPI GGATC 2 cut(s) 1052, 1090
BspT104I TTCGAA 1 cut(s) 1238
BspT107I GGYRCC 1 cut(s) 614
BsrBI CCGCTC 1 cut(s) 966
BsrDI GCAATG 3 cut(s) 236, 950, 976
BsrI ACTGG 6 cut(s) 383, 439, 561, 1025, 1063, 1096
BssECI CCNNGG 3 cut(s) 985, 1004, 1166
BssMI GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
BssT1I CCWWGG 2 cut(s) 1004, 1166
Bst2UI CCWGG 3 cut(s) 606, 639, 986
Bst4CI ACNGT 2 cut(s) 9, 475
Bst6I CTCTTC 2 cut(s) 78, 1032
BstAPI GCANNNNNTGC 3 cut(s) 242, 374, 697
BstBI TTCGAA 1 cut(s) 1238
BstC8I GCNNGC 3 cut(s) 231, 243, 494
BstDEI CTNAG 7 cut(s) 75, 246, 401, 647, 771, 939, 1326
BstF5I GGATG 4 cut(s) 62, 352, 586, 1084
BstKTI GATC 6 cut(s) 218, 291, 400, 727, 1060, 1085
BstMBI GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
BstMWI GCNNNNNNNGC 7 cut(s) 210, 242, 365, 374, 502, 557, 697
BstNI CCWGG 3 cut(s) 606, 639, 986
BstSCI CCNGG 3 cut(s) 604, 637, 984
BstV1I GCAGC 3 cut(s) 245, 684, 1377
BstX2I RGATCY 3 cut(s) 215, 397, 1057
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 3 cut(s) 215, 397, 1057
BsuRI GGCC 1 cut(s) 271
BtsCI GGATG 4 cut(s) 62, 352, 586, 1084
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 4 cut(s) 14, 432, 915, 1032
BveI ACCTGC 1 cut(s) 1266
Cac8I GCNNGC 3 cut(s) 231, 243, 494
CaiI CAGNNNCTG 1 cut(s) 697
CciI TCATGA 2 cut(s) 834, 885
Cfr13I GGNCC 1 cut(s) 1111
CsiI ACCWGGT 1 cut(s) 604
Csp6I GTAC 1 cut(s) 1001
CviAII CATG 6 cut(s) 260, 483, 835, 840, 886, 1428
CviQI GTAC 1 cut(s) 1001
DdeI CTNAG 7 cut(s) 75, 246, 401, 647, 771, 939, 1326
DpnI GATC 6 cut(s) 217, 290, 399, 726, 1059, 1084
DpnII GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
DraIII CACNNNGTG 1 cut(s) 485
Eam1104I CTCTTC 2 cut(s) 78, 1032
EarI CTCTTC 2 cut(s) 78, 1032
Eco130I CCWWGG 2 cut(s) 1004, 1166
Eco47I GGWCC 1 cut(s) 1111
Eco57I CTGAAG 2 cut(s) 476, 1370
Eco88I CYCGRG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 1111
EcoRII CCWGG 3 cut(s) 604, 637, 984
EcoT14I CCWWGG 2 cut(s) 1004, 1166
ErhI CCWWGG 2 cut(s) 1004, 1166
FaeI CATG 6 cut(s) 263, 486, 838, 843, 889, 1431
FatI CATG 6 cut(s) 259, 482, 834, 839, 885, 1427
Fnu4HI GCNGC 4 cut(s) 234, 698, 967, 1391
FokI GGATG 4 cut(s) 49, 359, 573, 1091
Fsp4HI GCNGC 4 cut(s) 234, 698, 967, 1391
FspBI CTAG 3 cut(s) 173, 1167, 1441
GluI GCNGC 4 cut(s) 234, 698, 967, 1391
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 4 cut(s) 660, 761, 1008, 1362
HaeIII GGCC 1 cut(s) 271
HapII CCGG 1 cut(s) 1076
Hin1II CATG 6 cut(s) 263, 486, 838, 843, 889, 1431
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 5 cut(s) 95, 131, 632, 1210, 1405
HpaII CCGG 1 cut(s) 1076
HphI GGTGA 4 cut(s) 440, 763, 839, 1106
Hpy166II GTNNAC 1 cut(s) 1030
Hpy188I TCNGA 7 cut(s) 24, 402, 570, 622, 940, 1246, 1410
Hpy188III TCNNGA 6 cut(s) 173, 709, 835, 886, 1271, 1283
Hpy8I GTNNAC 1 cut(s) 1030
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 799, 1394
HpyCH4III ACNGT 2 cut(s) 9, 475
HpyCH4IV ACGT 1 cut(s) 1368
HpyCH4V TGCA 7 cut(s) 62, 229, 691, 814, 898, 1232, 1261
HpyF10VI GCNNNNNNNGC 7 cut(s) 210, 242, 365, 374, 502, 557, 697
HpyF3I CTNAG 7 cut(s) 75, 246, 401, 647, 771, 939, 1326
HpySE526I ACGT 1 cut(s) 1368
Hsp92II CATG 6 cut(s) 263, 486, 838, 843, 889, 1431
Kzo9I GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
LmnI GCTCC 3 cut(s) 489, 694, 1312
Lsp1109I GCAGC 3 cut(s) 245, 684, 1377
LweI GCATC 4 cut(s) 71, 78, 168, 592
MabI ACCWGGT 1 cut(s) 604
MaeI CTAG 3 cut(s) 173, 1167, 1441
MaeII ACGT 1 cut(s) 1368
MaeIII GTNAC 4 cut(s) 428, 475, 1207, 1430
MalI GATC 6 cut(s) 217, 290, 399, 726, 1059, 1084
MbiI CCGCTC 1 cut(s) 966
MboI GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
MboII GAAGA 8 cut(s) 92, 95, 104, 312, 962, 1049, 1212, 1409
MflI RGATCY 3 cut(s) 215, 397, 1057
MluCI AATT 6 cut(s) 423, 872, 979, 1142, 1216, 1336
MlyI GAGTC 1 cut(s) 1204
MmeI TCCRAC 3 cut(s) 324, 522, 939
MroXI GAANNNNTTC 1 cut(s) 1278
MseI TTAA 3 cut(s) 39, 113, 149
MslI CAYNNNNRTG 2 cut(s) 465, 1025
MspA1I CMGCKG 3 cut(s) 865, 1127, 1390
MspI CCGG 1 cut(s) 1076
MspR9I CCNGG 3 cut(s) 606, 639, 986
MvaI CCWGG 3 cut(s) 606, 639, 986
MwoI GCNNNNNNNGC 7 cut(s) 210, 242, 365, 374, 502, 557, 697
NdeII GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
NlaIII CATG 6 cut(s) 263, 486, 838, 843, 889, 1431
NlaIV GGNNCC 2 cut(s) 616, 1113
NmuCI GTSAC 2 cut(s) 428, 1207
NspV TTCGAA 1 cut(s) 1238
OliI CACNNNNGTG 1 cut(s) 1025
PaeR7I CTCGAG 1 cut(s) 414
PagI TCATGA 2 cut(s) 834, 885
PdmI GAANNNNTTC 1 cut(s) 1278
PfeI GAWTC 4 cut(s) 95, 131, 632, 1405
PflMI CCANNNNNTGG 3 cut(s) 611, 1079, 1400
PfoI TCCNGGA 1 cut(s) 637
PkrI GCNGC 4 cut(s) 235, 699, 968, 1392
PleI GAGTC 1 cut(s) 1204
PpsI GAGTC 1 cut(s) 1204
PpuMI RGGWCCY 1 cut(s) 1111
PsiI TTATAA 1 cut(s) 1049
Psp5II RGGWCCY 1 cut(s) 1111
Psp6I CCWGG 3 cut(s) 604, 637, 984
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 3 cut(s) 604, 637, 984
PspN4I GGNNCC 2 cut(s) 616, 1113
PspPI GGNCC 1 cut(s) 1111
PspPPI RGGWCCY 1 cut(s) 1111
PspXI VCTCGAGB 1 cut(s) 414
PsrI GAACNNNNNNTAC 2 cut(s) 636, 668
PstNI CAGNNNCTG 1 cut(s) 697
PsuI RGATCY 3 cut(s) 215, 397, 1057
PvuII CAGCTG 2 cut(s) 865, 1390
RsaI GTAC 1 cut(s) 1002
RsaNI GTAC 1 cut(s) 1001
RseI CAYNNNNRTG 2 cut(s) 465, 1025
SaqAI TTAA 3 cut(s) 39, 113, 149
SatI GCNGC 4 cut(s) 234, 698, 967, 1391
Sau3AI GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
Sau96I GGNCC 1 cut(s) 1111
SchI GAGTC 1 cut(s) 1204
ScrFI CCNGG 3 cut(s) 606, 639, 986
SexAI ACCWGGT 1 cut(s) 604
SfaNI GCATC 4 cut(s) 71, 78, 168, 592
Sfr274I CTCGAG 1 cut(s) 414
SfuI TTCGAA 1 cut(s) 1238
SinI GGWCC 1 cut(s) 1111
SlaI CTCGAG 1 cut(s) 414
SmiMI CAYNNNNRTG 2 cut(s) 465, 1025
SmlI CTYRAG 3 cut(s) 54, 414, 656
SmoI CTYRAG 3 cut(s) 54, 414, 656
Sse9I AATT 6 cut(s) 423, 872, 979, 1142, 1216, 1336
SsiI CCGC 6 cut(s) 211, 496, 505, 551, 966, 1127
SspI AATATT 1 cut(s) 536
SspMI CTAG 3 cut(s) 173, 1167, 1441
StyD4I CCNGG 3 cut(s) 604, 637, 984
StyI CCWWGG 2 cut(s) 1004, 1166
TaaI ACNGT 2 cut(s) 9, 475
TaiI ACGT 1 cut(s) 1371
TaqI TCGA 2 cut(s) 415, 1238
TasI AATT 6 cut(s) 423, 872, 979, 1142, 1216, 1336
TauI GCSGC 1 cut(s) 969
TfiI GAWTC 4 cut(s) 95, 131, 632, 1405
Tru1I TTAA 3 cut(s) 39, 113, 149
Tru9I TTAA 3 cut(s) 39, 113, 149
TscAI CASTG 4 cut(s) 14, 439, 922, 1032
TseFI GTSAC 2 cut(s) 428, 1207
TseI GCWGC 3 cut(s) 233, 697, 1390
Tsp45I GTSAC 2 cut(s) 428, 1207
TspDTI ATGAA 5 cut(s) 120, 692, 823, 1008, 1050
TspRI CASTG 4 cut(s) 14, 439, 922, 1032
Van91I CCANNNNNTGG 3 cut(s) 611, 1079, 1400
VpaK11BI GGWCC 1 cut(s) 1111
XapI RAATTY 2 cut(s) 872, 1336
XbaI TCTAGA 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 414
XmaJI CCTAGG 1 cut(s) 1166
XmnI GAANNNNTTC 1 cut(s) 1278
XspI CTAG 3 cut(s) 173, 1167, 1441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.