Rh2DG000900

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002570
Physical Location & Seq
Reverse (-)
94114 .. 99136
5023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG000900.1

Sequence Viewer

Length: 1002 bp
ATGGATGAAGAGTATGACGTCATAGTGTTGGGAACTGGTCTGAAGGAATGCATCCTCAGCGGTCTTCTCTCGGTTGACGGCCTCAAGGTTCTACACATGGATAGGAATGACTATTACGGAGGAGAGTGTGCATCGCTTAATCTTGTTCAGCTCTGGAAGAGGTTCAGGGGAGATGATAAGCCCCCAGCACAGTTGGGCTCTAGTAGGGATTATAATGTGGACATGGTCCCTAAGTTTATGATGGCCAATGGAACTCTAGTGCGTGTCCTCATTCATACAGATGTTACCAAGTATTTGTCCTTCAAAGCTGTGGATGGCAGTTTTGTCTATAATAAAGGAAAGGTTCACAAGGTTCCAGCAAATGATATGGAGGCACTTAAATCTCCACTCATGGGTCTATTCGAAAAGCGCCGTGCCCGCAAGTTCTTCATATATGTTCAAGATTATAATGAAAGCGATCCCAAAACACACGAGGGAATGGACTTAACAAGAGTGACAACTAGAGAATTGATTGCAAAATATGGTCTTGATGACAACACTATTGACTTCATTGGGCATGCTTTAGCCCTTCATAGAGATGATCGCTACCTGGATGAACCTGCACTGGATACTGTGAAAAGGATGAAGCTTTATGCGGAATCTATTGCACGTTTTCAAGGAGGATCTCCATACATTTATCCTTTGTATGGACTAGGAGAGCTTCCTCAGGCATTTGCACGTCTTAGTGCGGTTTATGGTGGTACTTATATGCTTAATAAACCTGAATGCAAGGTGGAGTTCAATGAGGAAGGGAAAGTTATTGGTGTCACATCTGAAGGTGAAACTGCCAAGTGCACAAAAGTTGTCTGTGACCCTTCTTACTTACCCAACAAGGTCAGAAAGGTTGGTAAGGTTGCAAGGGCTATAGCCATAATGAGCCACCCGATTCCAAACACAAATGATTCTCATTCAGTGCAGGTTATCCTGCCACAAAAGCAGCTGGGTCGCAGATCCGATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

333

Amino Acids

37.43

Weight (kDa)

8.12

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 1 - 333 1.4e-185 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 213, 447
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 2 cut(s) 607, 946
AciI CCGC 4 cut(s) 60, 418, 635, 728
AclWI GGATC 3 cut(s) 452, 670, 984
AcoI YGGCCR 1 cut(s) 243
AcuI CTGAAG 2 cut(s) 62, 834
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 742
AfiI CCNNNNNNNGG 2 cut(s) 392, 686
AgsI TTSAA 4 cut(s) 304, 440, 656, 781
AjiI CACGTC 1 cut(s) 719
AjnI CCWGG 1 cut(s) 588
AluBI AGCT 5 cut(s) 151, 308, 628, 700, 979
AluI AGCT 5 cut(s) 151, 308, 628, 700, 979
Alw21I GWGCWC 1 cut(s) 836
Alw44I GTGCAC 1 cut(s) 832
AlwI GGATC 3 cut(s) 452, 670, 984
AoxI GGCC 2 cut(s) 79, 243
ApaLI GTGCAC 1 cut(s) 832
ApeKI GCWGC 1 cut(s) 976
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 830
AsuII TTCGAA 1 cut(s) 402
AvaII GGWCC 1 cut(s) 226
AxyI CCTNAGG 1 cut(s) 705
BaeGI GKGCMC 2 cut(s) 418, 836
BalI TGGCCA 1 cut(s) 245
BanII GRGCYC 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 284, 316
BauI CACGAG 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 836
BbvCI CCTCAGC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 988
BccI CCATC 2 cut(s) 235, 308
BceAI ACGGC 2 cut(s) 94, 396
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciT130I CCWGG 1 cut(s) 590
BciVI GTATCC 1 cut(s) 601
BfaI CTAG 4 cut(s) 201, 257, 501, 692
BfmI CTRYAG 1 cut(s) 903
BfoI RGCGCY 1 cut(s) 412
BfuAI ACCTGC 2 cut(s) 607, 946
BfuI GTATCC 1 cut(s) 601
BisI GCNGC 1 cut(s) 977
BlsI GCNGC 1 cut(s) 978
Bme1390I CCNGG 1 cut(s) 590
Bme18I GGWCC 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 719
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 228, 354
BmrFI CCNGG 1 cut(s) 590
BmsI GCATC 2 cut(s) 60, 140
BpiI GAAGAC 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 686
Bse1I ACTGG 2 cut(s) 40, 609
Bse21I CCTNAGG 1 cut(s) 705
BseBI CCWGG 1 cut(s) 590
BseGI GGATG 5 cut(s) 10, 51, 319, 598, 627
BseLI CCNNNNNNNGG 2 cut(s) 392, 686
BseMII CTCAG 2 cut(s) 70, 719
BseNI ACTGG 2 cut(s) 40, 609
BseRI GAGGAG 1 cut(s) 135
BseSI GKGCMC 2 cut(s) 418, 836
BseXI GCAGC 1 cut(s) 988
BseYI CCCAGC 2 cut(s) 184, 979
BsgI GTGCAG 2 cut(s) 585, 974
BshFI GGCC 2 cut(s) 81, 245
BsiHKAI GWGCWC 1 cut(s) 836
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 392, 686
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 2 cut(s) 53, 770
BsnI GGCC 2 cut(s) 81, 245
Bsp119I TTCGAA 1 cut(s) 402
Bsp1286I GDGCHC 3 cut(s) 200, 418, 836
Bsp143I GATC 4 cut(s) 457, 580, 662, 989
BspACI CCGC 4 cut(s) 60, 418, 635, 728
BspANI GGCC 2 cut(s) 81, 245
BspCNI CTCAG 2 cut(s) 69, 718
BspLI GGNNCC 2 cut(s) 228, 354
BspMI ACCTGC 2 cut(s) 607, 946
BspPI GGATC 3 cut(s) 452, 670, 984
BspT104I TTCGAA 1 cut(s) 402
BsrI ACTGG 2 cut(s) 40, 609
BssMI GATC 4 cut(s) 457, 580, 662, 989
BssNI GRCGYC 1 cut(s) 18
BssSI CACGAG 1 cut(s) 470
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 1 cut(s) 590
Bst4CI ACNGT 2 cut(s) 192, 613
Bst6I CTCTTC 2 cut(s) 3, 152
BstACI GRCGYC 1 cut(s) 18
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 2 cut(s) 418, 558
BstDEI CTNAG 4 cut(s) 56, 231, 705, 722
BstF5I GGATG 5 cut(s) 10, 51, 319, 598, 627
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 4 cut(s) 460, 583, 665, 992
BstMBI GATC 4 cut(s) 457, 580, 662, 989
BstMWI GCNNNNNNNGC 3 cut(s) 57, 417, 973
BstNI CCWGG 1 cut(s) 590
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 1 cut(s) 588
BstSFI CTRYAG 1 cut(s) 903
BstSLI GKGCMC 2 cut(s) 418, 836
BstV1I GCAGC 1 cut(s) 988
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 2 cut(s) 662, 989
BstYI RGATCY 2 cut(s) 662, 989
Bsu36I CCTNAGG 1 cut(s) 705
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 2 cut(s) 81, 245
BtgZI GCGATG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 719
BtsCI GGATG 5 cut(s) 10, 51, 319, 598, 627
BtsIMutI CAGTG 2 cut(s) 602, 957
BveI ACCTGC 2 cut(s) 607, 946
Cac8I GCNNGC 2 cut(s) 418, 558
CfoI GCGC 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 741
CviAII CATG 4 cut(s) 97, 223, 391, 557
CviQI GTAC 1 cut(s) 741
DdeI CTNAG 4 cut(s) 56, 231, 705, 722
DpnI GATC 4 cut(s) 459, 582, 664, 991
DpnII GATC 4 cut(s) 457, 580, 662, 989
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 3, 152
EarI CTCTTC 2 cut(s) 3, 152
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 2 cut(s) 62, 834
Eco81I CCTNAGG 1 cut(s) 705
EcoRII CCWGG 1 cut(s) 588
EcoT22I ATGCAT 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 4 cut(s) 100, 226, 394, 560
FaqI GGGAC 1 cut(s) 212
FatI CATG 4 cut(s) 96, 222, 390, 556
FauI CCCGC 1 cut(s) 425
Fnu4HI GCNGC 1 cut(s) 977
FokI GGATG 5 cut(s) 17, 38, 326, 605, 634
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 977
FspBI CTAG 4 cut(s) 201, 257, 501, 692
GlaI GCGC 1 cut(s) 410
GluI GCNGC 1 cut(s) 977
GsaI CCCAGC 2 cut(s) 188, 983
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 2 cut(s) 81, 245
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 4 cut(s) 100, 226, 394, 560
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 3 cut(s) 638, 925, 941
HphI GGTGA 1 cut(s) 830
Hpy166II GTNNAC 4 cut(s) 76, 220, 346, 834
Hpy188I TCNGA 4 cut(s) 42, 814, 878, 994
Hpy188III TCNNGA 3 cut(s) 154, 440, 527
Hpy8I GTNNAC 4 cut(s) 76, 220, 346, 834
HpyAV CCTTC 6 cut(s) 37, 310, 578, 782, 809, 864
HpyCH4III ACNGT 2 cut(s) 192, 613
HpyCH4IV ACGT 3 cut(s) 18, 649, 718
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 417, 973
HpyF3I CTNAG 4 cut(s) 56, 231, 705, 722
HpySE526I ACGT 3 cut(s) 18, 649, 718
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 4 cut(s) 100, 226, 394, 560
HspAI GCGC 1 cut(s) 409
Kzo9I GATC 4 cut(s) 457, 580, 662, 989
Lsp1109I GCAGC 1 cut(s) 988
LweI GCATC 2 cut(s) 60, 140
MaeI CTAG 4 cut(s) 201, 257, 501, 692
MaeII ACGT 3 cut(s) 18, 649, 718
MaeIII GTNAC 4 cut(s) 283, 493, 805, 848
MalI GATC 4 cut(s) 459, 582, 664, 991
MboI GATC 4 cut(s) 457, 580, 662, 989
MboII GAAGA 4 cut(s) 20, 56, 169, 418
MflI RGATCY 2 cut(s) 662, 989
MhlI GDGCHC 3 cut(s) 200, 418, 836
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 1 cut(s) 506
MluNI TGGCCA 1 cut(s) 245
Mox20I TGGCCA 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 245
MseI TTAA 4 cut(s) 138, 378, 485, 753
MslI CAYNNNNRTG 2 cut(s) 279, 576
Msp20I TGGCCA 1 cut(s) 245
MspA1I CMGCKG 2 cut(s) 60, 979
MspR9I CCNGG 1 cut(s) 590
Mva1269I GAATGC 2 cut(s) 53, 770
MvaI CCWGG 1 cut(s) 590
MwoI GCNNNNNNNGC 3 cut(s) 57, 417, 973
NdeII GATC 4 cut(s) 457, 580, 662, 989
NlaIII CATG 4 cut(s) 100, 226, 394, 560
NlaIV GGNNCC 2 cut(s) 228, 354
NmuCI GTSAC 3 cut(s) 493, 805, 848
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 1 cut(s) 560
NspV TTCGAA 1 cut(s) 402
PaeI GCATGC 1 cut(s) 560
PctI GAATGC 2 cut(s) 53, 770
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 3 cut(s) 638, 925, 941
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 978
PsiI TTATAA 2 cut(s) 213, 447
Psp6I CCWGG 1 cut(s) 588
PspFI CCCAGC 2 cut(s) 184, 979
PspGI CCWGG 1 cut(s) 588
PspN4I GGNNCC 2 cut(s) 228, 354
PspPI GGNCC 1 cut(s) 226
PsuI RGATCY 2 cut(s) 662, 989
PsyI GACNNNGTC 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 979
RsaI GTAC 1 cut(s) 742
RsaNI GTAC 1 cut(s) 741
RseI CAYNNNNRTG 2 cut(s) 279, 576
SaqAI TTAA 4 cut(s) 138, 378, 485, 753
SatI GCNGC 1 cut(s) 977
Sau3AI GATC 4 cut(s) 457, 580, 662, 989
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 590
SduI GDGCHC 3 cut(s) 200, 418, 836
SfaNI GCATC 2 cut(s) 60, 140
SfcI CTRYAG 1 cut(s) 903
SfuI TTCGAA 1 cut(s) 402
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 2 cut(s) 279, 576
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SphI GCATGC 1 cut(s) 560
Sse9I AATT 1 cut(s) 506
SsiI CCGC 4 cut(s) 60, 418, 635, 728
SspMI CTAG 4 cut(s) 201, 257, 501, 692
StyD4I CCNGG 1 cut(s) 588
TaaI ACNGT 2 cut(s) 192, 613
TaiI ACGT 3 cut(s) 21, 652, 721
TaqI TCGA 1 cut(s) 402
TasI AATT 1 cut(s) 506
TfiI GAWTC 3 cut(s) 638, 925, 941
Tru1I TTAA 4 cut(s) 138, 378, 485, 753
Tru9I TTAA 4 cut(s) 138, 378, 485, 753
TscAI CASTG 2 cut(s) 609, 957
TseFI GTSAC 3 cut(s) 493, 805, 848
TseI GCWGC 1 cut(s) 976
Tsp45I GTSAC 3 cut(s) 493, 805, 848
TspDTI ATGAA 8 cut(s) 21, 263, 418, 465, 538, 560, 609, 638
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 2 cut(s) 609, 957
Tth111I GACNNNGTC 1 cut(s) 224
VneI GTGCAC 1 cut(s) 832
VpaK11BI GGWCC 1 cut(s) 226
XceI RCATGY 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 4 cut(s) 201, 257, 501, 692
ZraI GACGTC 1 cut(s) 19
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.